View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3306_high_6 (Length: 472)
Name: NF3306_high_6
Description: NF3306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3306_high_6 |
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| [»] scaffold0014 (2 HSPs) |
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| [»] scaffold0352 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 83; Significance: 4e-39; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 249 - 421
Target Start/End: Complemental strand, 51389912 - 51389747
Alignment:
| Q |
249 |
tgagttattgatctcacttttatgtcctcgatcttgaatcgtttcagtgcattcgaagtttacaagcattcaaattcagattggctttgtaagactttga |
348 |
Q |
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||||||||||||||||||||||| |||||||||| |||||||||||| ||| ||||| ||||||| ||||| ||| |||||||||||||||||| |
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| T |
51389912 |
tgagttattgatctcacttttat-------atcttgaatcatttcagtgcattggaaatttactagcattcgaattcggatgggctttgtaagactttga |
51389820 |
T |
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| Q |
349 |
atcatatgtaagggactttttgtttgtggatatcggtgtatgttatgctgcgctgtgtggttagttcatgtaa |
421 |
Q |
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||| | ||| ||||||| ||| ||||||| |||||||||||||||||||||| ||||||||| ||| |||||| |
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| T |
51389819 |
atcgtttgtgagggactatttctttgtggctatcggtgtatgttatgctgcgttgtgtggtttgtttatgtaa |
51389747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 359 - 462
Target Start/End: Original strand, 770262 - 770367
Alignment:
| Q |
359 |
agggactttttgtttgtggatatcggtgtatgttatgctgcgctgtgtggttagttcatgtaa--nnnnnnnctgtgctgctacttcaatttcaattctg |
456 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |
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| T |
770262 |
agggactttttgtttgtggatgtcggtgtatgttatgctgcgctgtgtggtttgttcatgtaatttttttttctgtgctgctacttcaatttcaattctg |
770361 |
T |
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| Q |
457 |
cctttg |
462 |
Q |
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|||||| |
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| T |
770362 |
cctttg |
770367 |
T |
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Target: scaffold0014 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 203 - 257
Target Start/End: Original strand, 33164 - 33218
Alignment:
| Q |
203 |
atcactgattgtagtgttcttctaattttgtatgtgttcatatatatgagttatt |
257 |
Q |
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| T |
33164 |
atcactgattgtagtgttcttctaatgttgtatgtgttcatatatatgagttatt |
33218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 98 - 145
Target Start/End: Original strand, 33068 - 33115
Alignment:
| Q |
98 |
tttcaattgcctaatatatcatagcctacaattaattaattcctcctc |
145 |
Q |
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| T |
33068 |
tttcaattgcctaatatatcatagcctacaattaattaattcctcctc |
33115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 249 - 351
Target Start/End: Original strand, 4351512 - 4351614
Alignment:
| Q |
249 |
tgagttattgatctcacttttatgtcctcgatcttgaatcgtttcagtgcattcgaagtttacaagcattcaaattcagattggctttgtaagactttga |
348 |
Q |
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|||||||||||| ||| |||||||||||| ||||||||| |||||||||||| ||||||||||||||||||| ||| ||| ||| |||| ||| |||| |
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| T |
4351512 |
tgagttattgatatcatttttatgtcctctttcttgaatcatttcagtgcattggaagtttacaagcattcaatttcggatgggcattgttagatcttga |
4351611 |
T |
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| Q |
349 |
atc |
351 |
Q |
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||| |
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| T |
4351612 |
atc |
4351614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0352 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0352
Description:
Target: scaffold0352; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 249 - 351
Target Start/End: Complemental strand, 15507 - 15405
Alignment:
| Q |
249 |
tgagttattgatctcacttttatgtcctcgatcttgaatcgtttcagtgcattcgaagtttacaagcattcaaattcagattggctttgtaagactttga |
348 |
Q |
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|||||||||||| |||||||||||||||| ||||||||| |||| ||||||| |||||||||||||||| || ||| ||| ||| |||| ||| |||| |
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| T |
15507 |
tgagttattgatatcacttttatgtcctctttcttgaatcatttctgtgcattggaagtttacaagcatttaatttcggatgggcattgttagatcttga |
15408 |
T |
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| Q |
349 |
atc |
351 |
Q |
| |
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||| |
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| T |
15407 |
atc |
15405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 247 - 399
Target Start/End: Original strand, 29199541 - 29199695
Alignment:
| Q |
247 |
tatgagttattgatctcacttttatgtcctcgatcttgaatcgtttcagtgcattcgaagtttac-aagcattcaaattcagattggctttgtaagactt |
345 |
Q |
| |
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|||||||||||||| |||||||||||||||| |||| |||| |||||||| ||| ||||||||| ||||||||||||| ||| ||||||| ||| | |
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| T |
29199541 |
tatgagttattgatatcacttttatgtcctctttcttaaatcatttcagtgtattggaagtttacaaagcattcaaatttggatgtgctttgttagatct |
29199640 |
T |
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| Q |
346 |
tgaatcatatgtaaggga-ctttttgtttgtggatatcggtgtatgttatgctgc |
399 |
Q |
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| T |
29199641 |
ttaatcgtttgtgagggagctttttcttcgtggctgtcggtgtgtgttatgctgc |
29199695 |
T |
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