View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3306_low_1 (Length: 615)

Name: NF3306_low_1
Description: NF3306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3306_low_1
NF3306_low_1
[»] chr2 (14 HSPs)
chr2 (167-597)||(35681602-35682036)
chr2 (390-597)||(31635491-31635698)
chr2 (172-398)||(31635882-31636112)
chr2 (183-305)||(22011076-22011198)
chr2 (172-254)||(27952637-27952719)
chr2 (195-283)||(280297-280385)
chr2 (167-237)||(2165636-2165706)
chr2 (176-293)||(33053125-33053241)
chr2 (172-293)||(36648579-36648700)
chr2 (169-293)||(32162225-32162347)
chr2 (211-304)||(18945646-18945739)
chr2 (171-245)||(23457389-23457462)
chr2 (16-61)||(35682142-35682187)
chr2 (172-248)||(36614845-36614921)
[»] chr7 (8 HSPs)
chr7 (172-597)||(4302804-4303234)
chr7 (176-288)||(11001090-11001202)
chr7 (173-293)||(1217473-1217591)
chr7 (193-284)||(1369529-1369620)
chr7 (176-291)||(8915437-8915551)
chr7 (173-249)||(1786424-1786500)
chr7 (172-293)||(13882995-13883117)
chr7 (167-289)||(11228430-11228551)
[»] chr8 (9 HSPs)
chr8 (292-566)||(37192733-37193008)
chr8 (167-293)||(23573240-23573365)
chr8 (167-237)||(22922157-22922227)
chr8 (172-245)||(26377776-26377849)
chr8 (172-247)||(22512360-22512435)
chr8 (169-311)||(2688855-2688999)
chr8 (172-236)||(2188719-2188783)
chr8 (195-291)||(24577813-24577909)
chr8 (180-223)||(37193064-37193107)
[»] chr5 (5 HSPs)
chr5 (167-305)||(21845197-21845335)
chr5 (176-293)||(18252124-18252241)
chr5 (195-237)||(19677630-19677672)
chr5 (167-201)||(21849278-21849312)
chr5 (167-201)||(21857192-21857226)
[»] chr1 (8 HSPs)
chr1 (168-288)||(10926905-10927026)
chr1 (167-290)||(10927811-10927934)
chr1 (172-288)||(13441901-13442015)
chr1 (167-293)||(23988929-23989055)
chr1 (182-254)||(8966022-8966094)
chr1 (172-294)||(31915240-31915365)
chr1 (171-285)||(40805571-40805685)
chr1 (184-247)||(31522584-31522647)
[»] chr6 (15 HSPs)
chr6 (167-293)||(18203141-18203265)
chr6 (169-293)||(12881729-12881852)
chr6 (172-289)||(22888963-22889080)
chr6 (176-292)||(34374051-34374167)
chr6 (167-237)||(30049629-30049699)
chr6 (167-237)||(30051916-30051986)
chr6 (172-289)||(22873520-22873637)
chr6 (172-289)||(22910506-22910623)
chr6 (170-237)||(3541959-3542026)
chr6 (167-289)||(12778664-12778784)
chr6 (172-217)||(11194398-11194443)
chr6 (193-249)||(8047661-8047717)
chr6 (167-203)||(18726879-18726915)
chr6 (183-247)||(32361109-32361173)
chr6 (198-236)||(18720031-18720069)
[»] chr4 (7 HSPs)
chr4 (167-293)||(22716318-22716444)
chr4 (167-293)||(22988773-22988899)
chr4 (169-293)||(10494628-10494752)
chr4 (195-289)||(7634998-7635092)
chr4 (167-237)||(13085398-13085471)
chr4 (170-228)||(6659640-6659697)
chr4 (187-249)||(9260313-9260375)
[»] chr3 (6 HSPs)
chr3 (172-293)||(365863-365983)
chr3 (172-242)||(3064051-3064121)
chr3 (184-293)||(8536655-8536764)
chr3 (172-248)||(2472969-2473045)
chr3 (172-208)||(43304270-43304306)
chr3 (190-235)||(24516698-24516743)
[»] scaffold0110 (1 HSPs)
scaffold0110 (167-237)||(45923-45993)
[»] scaffold0054 (3 HSPs)
scaffold0054 (172-289)||(10359-10476)
scaffold0054 (184-293)||(49018-49127)
scaffold0054 (189-228)||(37484-37523)
[»] scaffold0024 (2 HSPs)
scaffold0024 (176-289)||(145442-145555)
scaffold0024 (185-289)||(144177-144284)


Alignment Details
Target: chr2 (Bit Score: 361; Significance: 0; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 167 - 597
Target Start/End: Complemental strand, 35682036 - 35681602
Alignment:
Q  167 ctataaaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgtt 266  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  35682036 ctataaaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccaagttctctttctgataaagagctttctatgcatgtt 35681937  T
Q  267 gactccttcaatgaacaagagaccacctggatcccattggttgaatcgtgagcgtccctttttatggacaaagcagccactgagcatggtaccaacaata 366  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  35681936 gactccttcaatgaacaagagaccacctggatcccattggttgaatcgtgagcgtccctttttatggacaaagcagccactgagcaaggtaccaacaata 35681837  T
Q  367 gcagactcacttgataattctgtataagttagagtactattaagtgatgcctgatcattttgtacttgaagtgtaagaatgaatgaaaccaacacagttg 466  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  35681836 gcagactcacttgataattctgtataagttagagtactgttaagtgatgcctgatcattttgtacttgaagtgtaagaatgaatgaaaccaacacagtaa 35681737  T
Q  467 acgaatccccttttatttgagagaataaccaatatcctttttcatgaaatccaagtaaa-gtttaataacat---gcagaacaccaaatggtgagagtac 562  Q
    ||||||||| |||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||||   |||||||||||||||||||||||||    
T  35681736 acgaatccctttttatttaagagaataaccaatatcccttttcatgaaatccaagtaaaggtttaataacatgcagcagaacaccaaatggtgagagtac 35681637  T
Q  563 cctttgtataatgtttcttggttccactttatata 597  Q
    |||| || ||| |||||||||| ||||||||||||    
T  35681636 ccttagtctaacgtttcttggtcccactttatata 35681602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 165; E-Value: 6e-88
Query Start/End: Original strand, 390 - 597
Target Start/End: Complemental strand, 31635698 - 31635491
Alignment:
Q  390 ataagttagagtactattaagtgatgcctgatcattttgtacttgaagtgtaagaatgaatgaaaccaacacagttgacgaatccccttttatttgagag 489  Q
    ||||||||||| ||  ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| | ||||||||||||||||||||||||    
T  31635698 ataagttagagcaccgttaagtgatgcctgatcattttgtacttgaagtataagaataaatgaaaccaacaca-tagacgaatccccttttatttgagag 31635600  T
Q  490 aataaccaatatcctttttcatgaaatccaagtaaag-tttaataacatgcagaacaccaaatggtgagagtaccctttgtataatgtttcttggttcca 588  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  31635599 aataaccaatatcctttttcatgaaatccaagtaaaggtttaataacatgcagaacaccaaatggtgagagtacccttggtataatgtttcttggttcca 31635500  T
Q  589 ctttatata 597  Q
    |||||||||    
T  31635499 ctttatata 31635491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 172 - 398
Target Start/End: Complemental strand, 31636112 - 31635882
Alignment:
Q  172 aaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgttgactc 271  Q
    |||||||||| ||||||||||| |||||||||||||||||||||||||||||||  |||||||||| ||  ||||||| | || | ||||||||||||||    
T  31636112 aaattactaataaaaccctcctacatcagtctcctccacctctgaagaactcgaatccgagttctcatttagataaagagtttcccatgcatgttgactc 31636013  T
Q  272 cttcaatgaacaagag----accacctggatcccattggttgaatcgtgagcgtccctttttatggacaaagcagccactgagcatggtaccaacaatag 367  Q
    || |||||||||||||     ||||| |||||||||||||||||   |||  |||| |||||||||||| ||||||||||| |||  |||||||||||||    
T  31636012 ctccaatgaacaagagcacacccacccggatcccattggttgaactctgaaggtccgtttttatggacagagcagccactgtgcaatgtaccaacaatag 31635913  T
Q  368 cagactcacttgataattctgtataagttag 398  Q
    |||||||||||||||||||| ||||||||||    
T  31635912 cagactcacttgataattctatataagttag 31635882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 183 - 305
Target Start/End: Complemental strand, 22011198 - 22011076
Alignment:
Q  183 aaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttct-atgcatgttgactccttcaatgaa 281  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||| |||||||| |||| ||||||   ||||| ||| |||||||||||||| |||||    
T  22011198 aaaaccctcctgcatcactctcctccacctctaaagaactcgaccctgagttctcattctaataaag-aatttctcatgtatgttgactccttcgatgaa 22011100  T
Q  282 caagagaccacctggatcccattg 305  Q
    ||||| |||||| |||||||||||    
T  22011099 caagataccacccggatcccattg 22011076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 172 - 254
Target Start/End: Original strand, 27952637 - 27952719
Alignment:
Q  172 aaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctt 254  Q
    |||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  27952637 aaattattaataaaaccctcctacatcagtctcctccacctctgaagaactcgaccccgagttctcattctgataaagagctt 27952719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 195 - 283
Target Start/End: Original strand, 280297 - 280385
Alignment:
Q  195 catcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgttgactccttcaatgaaca 283  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||   ||||||||||| |||| |||||||||    
T  280297 catcagtctcctccacctctgaagaactcgaccccgagttctcattctgataaagagcttcacatgcatgttgaatcctccaatgaaca 280385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 167 - 237
Target Start/End: Complemental strand, 2165706 - 2165636
Alignment:
Q  167 ctataaaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctc 237  Q
    |||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  2165706 ctataaaattactaaggaaactctcctacatcagtctcctccacctctgaagaactcgaccccgagttctc 2165636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 176 - 293
Target Start/End: Complemental strand, 33053241 - 33053125
Alignment:
Q  176 tactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgttgactccttc 275  Q
    ||||||| ||||||| || |||||||||||||||||||||||||||||||||||| |||||  |||| |||||| ||||   || ||||| |||||||      
T  33053241 tactaaggaaacccttctacatcagtctcctccacctctgaagaactcgaccccg-gttcttattctaataaagagcttctcattcatgtcgactcctct 33053143  T
Q  276 aatgaacaagagaccacc 293  Q
    ||| ||||||||||||||    
T  33053142 aataaacaagagaccacc 33053125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 172 - 293
Target Start/End: Complemental strand, 36648700 - 36648579
Alignment:
Q  172 aaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgat-aaagcgctttctatgcatgttgact 270  Q
    ||||||||||| |||||||||| ||| ||||||||||| || ||||||||||||| || ||||||  ||||||| |||| || ||| ||||||| |||||    
T  36648700 aaattactaaggaaaccctcctacatgagtctcctccatctatgaagaactcgactcccagttcttgttctgataaaagtgc-ttccatgcatgatgact 36648602  T
Q  271 ccttcaatgaacaagagaccacc 293  Q
    | | ||||||| |||||||||||    
T  36648601 cttccaatgaataagagaccacc 36648579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 169 - 293
Target Start/End: Original strand, 32162225 - 32162347
Alignment:
Q  169 ataaaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgttga 268  Q
    |||||||| ||||| ||| |||| | ||| ||||||||||| ||||||| ||||| |||  |||||||| ||||||||||| |||| | |||||||||||    
T  32162225 ataaaatt-ctaaggaaatcctcttacattagtctcctccatctctgaaaaactcaaccttgagttctcattctgataaagagcttcccatgcatgttga 32162323  T
Q  269 ctccttcaatgaacaagagaccacc 293  Q
    || ||  ||||||||||||||||||    
T  32162324 ct-ctctaatgaacaagagaccacc 32162347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 211 - 304
Target Start/End: Complemental strand, 18945739 - 18945646
Alignment:
Q  211 ctctgaagaactcgaccccgagttctctttctgataaagcgctttct-atgcatgttgactccttcaatgaacaagagaccacctggatcccatt 304  Q
    ||||||| ||||||| ||||| ||||| ||||||| ||| | ||||| || |||||| |||||| ||||||||||||||||||||||||||||||    
T  18945739 ctctgaaaaactcgatcccgaattctcattctgattaagag-tttctcattcatgttaactcctgcaatgaacaagagaccacctggatcccatt 18945646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 171 - 245
Target Start/End: Complemental strand, 23457462 - 23457389
Alignment:
Q  171 aaaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgat 245  Q
    |||||||||||||||||| |||| |||||||| ||||||||||||||||||||   ||||||||||| |||||||    
T  23457462 aaaattactaagaaaacc-tcctacatcagtcgcctccacctctgaagaactctgacccgagttctcattctgat 23457389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 35682187 - 35682142
Alignment:
Q  16 atgaatgaaactgaggctccaactgaaataaatactataatgttct 61  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||    
T  35682187 atgaatgaaactgaggctcaaactgaaataaatactataatgttct 35682142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 172 - 248
Target Start/End: Complemental strand, 36614921 - 36614845
Alignment:
Q  172 aaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaa 248  Q
    ||||||||||| |||||||||| | | ||||||||||| || ||||||||||||| ||||||| |  ||||||||||    
T  36614921 aaattactaaggaaaccctcctacgtgagtctcctccatctatgaagaactcgactccgagtttttgttctgataaa 36614845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 286; Significance: 1e-160; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 172 - 597
Target Start/End: Complemental strand, 4303234 - 4302804
Alignment:
Q  172 aaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgttgactc 271  Q
    |||||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| || |||||||| |||| | |||||||| |||||    
T  4303234 aaattactaataaaaccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactc 4303135  T
Q  272 cttcaatgaacaagag----accacctggatcccattggttgaatcgtgagcgtccctttttatggacaaagcagccactgagcatggtaccaacaatag 367  Q
    || |||||||||||||     ||||| |||||||||||||||||  ||||  |||| |||||||||||| ||| | ||||| |||  |||||||||||||    
T  4303134 ctccaatgaacaagagcacacccacccggatcccattggttgaactgtgaaggtccgtttttatggacagagctgtcactgtgcaatgtaccaacaatag 4303035  T
Q  368 cagactcacttgataattctgtataagttagagtactattaagtgatgcctgatcattttgtacttgaagtgtaagaatgaatgaaaccaacacagttga 467  Q
    |||| ||||||||||||||| |||||||||||| ||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  4303034 cagaatcacttgataattctatataagttagagcactgttaagtgatgcctaatcattttgtacttgaagtataagaatgaatgaaaccaacacagttga 4302935  T
Q  468 cgaatccccttttatttgagagaataaccaatatcctttttcatgaaatccaagtaaa-gtttaataacatgcagaacaccaaatggtgagagtaccctt 566  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  4302934 cgaatccccttttatttgagagaataaccaatatcctttttcatgaaatccaagtaaaggtttaataacatgcagaacaccaaatggtgagagtaccctt 4302835  T
Q  567 tgtataatgtttcttggttccactttatata 597  Q
     ||||||||||||||||||||||||||||||    
T  4302834 agtataatgtttcttggttccactttatata 4302804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 176 - 288
Target Start/End: Original strand, 11001090 - 11001202
Alignment:
Q  176 tactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgttgactccttc 275  Q
    ||||||| |||||||||| ||||||||||||||||||||||||||||||||||| | ||||| || |||||||| |||| | ||||||||| |||||| |    
T  11001090 tactaaggaaaccctcctacatcagtctcctccacctctgaagaactcgaccccaaattctcattgtgataaagagcttcccatgcatgttaactcctcc 11001189  T
Q  276 aatgaacaagaga 288  Q
    |||||| ||||||    
T  11001190 aatgaaaaagaga 11001202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 173 - 293
Target Start/End: Original strand, 1217473 - 1217591
Alignment:
Q  173 aattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgttgactcc 272  Q
    ||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||||||||| | || |||||||| | |||| |||||||| |  |||    
T  1217473 aattactaataaaaccctcctgcatcagtctcctccacctttgaagaactcga-cccgagttcacgttttgataaagagatttc-atgcatgtcgtgtcc 1217570  T
Q  273 ttcaatgaacaagagaccacc 293  Q
    | |||| ||||||||||||||    
T  1217571 tccaattaacaagagaccacc 1217591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 193 - 284
Target Start/End: Complemental strand, 1369620 - 1369529
Alignment:
Q  193 tgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgttgactccttcaatgaacaa 284  Q
    ||||| ||||||||||||||||||||||||||| ||||||||||  ||||||||||| |||| | ||| |||||||||||| ||||||||||    
T  1369620 tgcatgagtctcctccacctctgaagaactcgagcccgagttcttattctgataaagagcttcccatgaatgttgactcctccaatgaacaa 1369529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 176 - 291
Target Start/End: Original strand, 8915437 - 8915551
Alignment:
Q  176 tactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgttgactccttc 275  Q
    ||||||| |||||||||| ||||||||||||||| |||||||||||| |||||||| ||||| |||| |||||  || | | |||||||||||||||| |    
T  8915437 tactaaggaaaccctcctacatcagtctcctccatctctgaagaactagaccccgaattctcattctaataaaaagc-tcccatgcatgttgactcctcc 8915535  T
Q  276 aatgaacaagagacca 291  Q
     |||||||||||||||    
T  8915536 gatgaacaagagacca 8915551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 173 - 249
Target Start/End: Complemental strand, 1786500 - 1786424
Alignment:
Q  173 aattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaag 249  Q
    |||||||||||||||| |||| ||| ||||||||||||||||||||||||||||| ||||||||| || ||||||||    
T  1786500 aattactaagaaaaccttcctacatgagtctcctccacctctgaagaactcgacctcgagttctcattttgataaag 1786424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 172 - 293
Target Start/End: Original strand, 13882995 - 13883117
Alignment:
Q  172 aaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgc--atgttgac 269  Q
    |||||||||| |||||||||||||||||||||| ||||||||| |||||||||| ||||||||||| |||| |||||| | ||   ||||  |||||| |    
T  13882995 aaattactaataaaaccctcctgcatcagtctcgtccacctctaaagaactcga-cccgagttctcattctaataaagagattctcatgcatatgttggc 13883093  T
Q  270 tccttcaatgaacaagagaccacc 293  Q
    |||| |||| ||||||||||||||    
T  13883094 tcctccaataaacaagagaccacc 13883117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 167 - 289
Target Start/End: Complemental strand, 11228551 - 11228430
Alignment:
Q  167 ctataaaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgtt 266  Q
    |||||||||||||| | ||||| |||| ||||||||| |||| ||||| ||||||| | |||||||||||| |||| ||||||  ||| | ||||||| |    
T  11228551 ctataaaattactatggaaaccatcctacatcagtcttctcc-cctcttaagaacttgcccccgagttctcattctaataaagaacttcccatgcatgat 11228453  T
Q  267 gactccttcaatgaacaagagac 289  Q
    |||||||  ||||||||||||||    
T  11228452 gactcctataatgaacaagagac 11228430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 160; Significance: 6e-85; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 160; E-Value: 6e-85
Query Start/End: Original strand, 292 - 566
Target Start/End: Complemental strand, 37193008 - 37192733
Alignment:
Q  292 cctggatcccattggttgaatcgtgagcgtccctttttatggacaaagcagccactgagcatggtaccaacaatagcagactcacttgataattctgtat 391  Q
    ||||||||||||||  ||||  ||||| |||||||||||||||||||||||||||||||||  ||||||||||| |||||| |||||||||||||| ||     
T  37193008 cctggatcccattgagtgaactgtgagggtccctttttatggacaaagcagccactgagcaatgtaccaacaattgcagacgcacttgataattctatac 37192909  T
Q  392 aagttagagtactattaagtgatgcctgatcattttgtacttgaagtgtaagaatgaatgaaaccaacacagttgacgaatccccttttatttgagagaa 491  Q
    ||| ||||| | | ||||||||||||||| ||| ||||||||||||| || ||||||||||||||||||||||    | ||||| |||||||||||||||    
T  37192908 aagctagagcattgttaagtgatgcctgaccatgttgtacttgaagtataggaatgaatgaaaccaacacagtaagtggatccctttttatttgagagaa 37192809  T
Q  492 taaccaatatcctttttcatgaaatccaagtaaa-gtttaataacatgcagaacaccaaatggtgagagtaccctt 566  Q
    ||||||||||||||||||||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  37192808 taaccaatatcctttttcatgaagtccaagtaaaggtttaataacatgcagaacatcaaatggtgagagtaccctt 37192733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 167 - 293
Target Start/End: Complemental strand, 23573365 - 23573240
Alignment:
Q  167 ctataaaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgtt 266  Q
    ||||||||||||||||||| |||| || ||| |||||||||||||||||||||||||||||| ||||| || || |||||||| |||| | |||||||||    
T  23573365 ctataaaattactaagaaa-cccttctacattagtctcctccacctctgaagaactcgacccggagttttcattttgataaagagcttcccatgcatgtt 23573267  T
Q  267 gactccttcaatgaacaagagaccacc 293  Q
    ||||||| |||||||||| ||||||||    
T  23573266 gactcctccaatgaacaaaagaccacc 23573240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 167 - 237
Target Start/End: Original strand, 22922157 - 22922227
Alignment:
Q  167 ctataaaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctc 237  Q
    |||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  22922157 ctataaaattactaaggaagccctcctacatcagtctcctccacctctgaagaactcgaccccgagttctc 22922227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 172 - 245
Target Start/End: Complemental strand, 26377849 - 26377776
Alignment:
Q  172 aaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgat 245  Q
    |||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||| |||||||    
T  26377849 aaattactaagaaaaccctcctacatcagtctcctccacctttgaagaactcgaccccaagttctcattctgat 26377776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 172 - 247
Target Start/End: Original strand, 22512360 - 22512435
Alignment:
Q  172 aaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataa 247  Q
    |||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||  |||||||||    
T  22512360 aaattactaataaaactctcctgcatcagtctcctccacctctaaagaactcgaccccgagttcttattctgataa 22512435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 169 - 311
Target Start/End: Complemental strand, 2688999 - 2688855
Alignment:
Q  169 ataaaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgttga 268  Q
    |||||| ||||||  |||||||||| ||| |||||||||||||| |||||||||||| | ||||||||| |||| ||  || | || | |||||||||||    
T  2688999 ataaaaatactaaagaaaccctcctacatgagtctcctccacctatgaagaactcgatcacgagttctcattctaat--agagtttcccatgcatgttga 2688902  T
Q  269 ctccttcaatgaacaagagaccacc----tggatcccattggttgaa 311  Q
    ||||| ||||||||| |||| ||||    ||||||||||||| ||||    
T  2688901 ctcctccaatgaacatgagatcaccctcatggatcccattgggtgaa 2688855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 172 - 236
Target Start/End: Original strand, 2188719 - 2188783
Alignment:
Q  172 aaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttct 236  Q
    ||||||||||| ||||| |||| | | ||||||||||| || ||||||||||||| |||||||||    
T  2188719 aaattactaaggaaaccttcctacgtgagtctcctccatctatgaagaactcgactccgagttct 2188783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 195 - 291
Target Start/End: Original strand, 24577813 - 24577909
Alignment:
Q  195 catcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgttgactccttcaatgaacaagagacca 291  Q
    |||||||||||||||| ||||||||| ||||||  |||||||| |||||||| ||  |||    ||||| || |||||| |||| ||||||||||||    
T  24577813 catcagtctcctccacttctgaagaattcgaccttgagttctccttctgatacagaacttcgcttgcatatttactcctccaataaacaagagacca 24577909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 180 - 223
Target Start/End: Complemental strand, 37193107 - 37193064
Alignment:
Q  180 aagaaaaccctcctgcatcagtctcctccacctctgaagaactc 223  Q
    |||||||||||||||||||||| | ||||| |||||||||||||    
T  37193107 aagaaaaccctcctgcatcagtttactccatctctgaagaactc 37193064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 99; Significance: 1e-48; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 167 - 305
Target Start/End: Original strand, 21845197 - 21845335
Alignment:
Q  167 ctataaaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgtt 266  Q
    ||||||||||||||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||| ||||||||||| |||| | |||||||||    
T  21845197 ctataaaattactaagaaaaccctcttgcatcagtctgttccacctctgaagaactcgaccccgagttctcattctgataaagagcttcccatgcatgtt 21845296  T
Q  267 gactccttcaatgaacaagagaccacctggatcccattg 305  Q
    ||||||| |||||||||||| |||||| |||||||||||    
T  21845297 gactcctccaatgaacaagaaaccacccggatcccattg 21845335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 176 - 293
Target Start/End: Complemental strand, 18252241 - 18252124
Alignment:
Q  176 tactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgttgactccttc 275  Q
    ||||||| ||||||||||||||||| |||||| |||||||||||||| |||||||||||||| || |||||||  |||||| |||||||| ||||||| |    
T  18252241 tactaaggaaaccctcctgcatcagcctcctctacctctgaagaacttgaccccgagttctcattatgataaacagctttccatgcatgtggactcctcc 18252142  T
Q  276 aatgaacaagagaccacc 293  Q
    |||| |||||||||||||    
T  18252141 aatggacaagagaccacc 18252124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 195 - 237
Target Start/End: Original strand, 19677630 - 19677672
Alignment:
Q  195 catcagtctcctccacctctgaagaactcgaccccgagttctc 237  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  19677630 catcagtctcctccacctctgaagaactcgaccccgagttctc 19677672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 167 - 201
Target Start/End: Original strand, 21849278 - 21849312
Alignment:
Q  167 ctataaaattactaagaaaaccctcctgcatcagt 201  Q
    ||||||||||||||||||||||||| |||||||||    
T  21849278 ctataaaattactaagaaaaccctcgtgcatcagt 21849312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 167 - 201
Target Start/End: Original strand, 21857192 - 21857226
Alignment:
Q  167 ctataaaattactaagaaaaccctcctgcatcagt 201  Q
    ||||||||||||||||||||||||| |||||||||    
T  21857192 ctataaaattactaagaaaaccctcgtgcatcagt 21857226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 1e-33; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 168 - 288
Target Start/End: Complemental strand, 10927026 - 10926905
Alignment:
Q  168 tataaaattactaa-gaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgtt 266  Q
    |||||||||||||| ||||| | |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||  ||| | |||||||||    
T  10927026 tataaaattactaatgaaaatcatcctacatcagtctcctccacctctgaagaactcgaccccgagttctcattctgataaagaacttcccatgcatgtt 10926927  T
Q  267 gactccttcaatgaacaagaga 288  Q
    ||||||| ||||||| ||||||    
T  10926926 gactcctccaatgaataagaga 10926905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 167 - 290
Target Start/End: Complemental strand, 10927934 - 10927811
Alignment:
Q  167 ctataaaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttct-atgcatgt 265  Q
    |||||||||||||||| |||||||||| || ||||||||||||| |||||||||||||||||||||||||| |||| |||||| | ||||| ||||| ||    
T  10927934 ctataaaattactaaggaaaccctcctacaacagtctcctccacttctgaagaactcgaccccgagttctcattctaataaagag-tttctcatgcaagt 10927836  T
Q  266 tgactccttcaatgaacaagagacc 290  Q
    |||||| | |||| |||||||||||    
T  10927835 tgactcttacaataaacaagagacc 10927811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 172 - 288
Target Start/End: Original strand, 13441901 - 13442015
Alignment:
Q  172 aaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgttgactc 271  Q
    |||||||||| |||||||| ||||||||||||||||||||||||||||| ||||   | ||||||| ||||||||||| |||| | ||||||||||||||    
T  13441901 aaattactaacaaaacccttctgcatcagtctcctccacctctgaagaattcga--tcaagttctcattctgataaagagcttcccatgcatgttgactc 13441998  T
Q  272 cttcaatgaacaagaga 288  Q
    || |||||| |||||||    
T  13441999 ctccaatgagcaagaga 13442015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 167 - 293
Target Start/End: Complemental strand, 23989055 - 23988929
Alignment:
Q  167 ctataaaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgtt 266  Q
    |||| ||||||||||| |||||||||| ||| |||||||| ||||||||||||||||||||  |||||||| || || ||||| |||| |  ||||||||    
T  23989055 ctatgaaattactaaggaaaccctcctacattagtctcctacacctctgaagaactcgaccttgagttctcgttttggtaaagagcttcccttgcatgtt 23988956  T
Q  267 gactccttcaatgaacaagagaccacc 293  Q
     ||||||||||||| ||||||| ||||    
T  23988955 aactccttcaatgagcaagagatcacc 23988929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 182 - 254
Target Start/End: Original strand, 8966022 - 8966094
Alignment:
Q  182 gaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctt 254  Q
    ||||||| |||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||    
T  8966022 gaaaaccttcctacatcagtctcctccacctctgaagaactcgaccctgagttctcattctgataaagagctt 8966094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 172 - 294
Target Start/End: Complemental strand, 31915365 - 31915240
Alignment:
Q  172 aaattactaagaaaaccctcctgcatcagtctcctcc---acctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgca-tgttg 267  Q
    |||||||||| ||||||||| ||||||||||||||||   ||||||||||||||| ||||||||||||| |||| || ||| | |||| || || |||||    
T  31915365 aaattactaataaaaccctcatgcatcagtctcctcctccacctctgaagaactcaaccccgagttctcgttctaat-aagagttttccattcattgttg 31915267  T
Q  268 actccttcaatgaacaagagaccacct 294  Q
    |||||| ||||||||||||||| ||||    
T  31915266 actcctccaatgaacaagagactacct 31915240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 171 - 285
Target Start/End: Complemental strand, 40805685 - 40805571
Alignment:
Q  171 aaaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgttgact 270  Q
    ||||||| |||| ||||  |||| |||||||||||||||||| | ||||| |||||||||||||||  ||||||||| | | ||   ||||||| |||||    
T  40805685 aaaattaataaggaaactatcctacatcagtctcctccacctttaaagaagtcgaccccgagttcttgttctgataaggagtttcacatgcatgatgact 40805586  T
Q  271 ccttcaatgaacaag 285  Q
    ||| | |||||||||    
T  40805585 cctccgatgaacaag 40805571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 184 - 247
Target Start/End: Complemental strand, 31522647 - 31522584
Alignment:
Q  184 aaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataa 247  Q
    |||||||||| |||||| | | |||||||||||||||||||||  ||||||||| |||||||||    
T  31522647 aaaccctcctacatcagccccttccacctctgaagaactcgacttcgagttctcgttctgataa 31522584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 7e-32; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 167 - 293
Target Start/End: Complemental strand, 18203265 - 18203141
Alignment:
Q  167 ctataaaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgtt 266  Q
    ||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||| || | |||||| | |||| |||||||||    
T  18203265 ctataaaattactgagaaa-ccctcctacatcagtctcctccacctctgaagaactcga-cccgagttctcattttaataaagagttttccatgcatgtt 18203168  T
Q  267 gactccttcaatgaacaagagaccacc 293  Q
    |||||||  ||||||||||||||||||    
T  18203167 gactcctcgaatgaacaagagaccacc 18203141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 169 - 293
Target Start/End: Complemental strand, 12881852 - 12881729
Alignment:
Q  169 ataaaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgttga 268  Q
    |||||||||||||| |||||||||| ||||||||||||||||||  |||||||||||||||||| |||| ||| ||| |||  ||| | |||||||||||    
T  12881852 ataaaattactaaggaaaccctcctacatcagtctcctccacctaagaagaactcgaccccgagctctcattccgat-aagaacttcccatgcatgttga 12881754  T
Q  269 ctccttcaatgaacaagagaccacc 293  Q
    || ||||||||||||||||||||||    
T  12881753 cttcttcaatgaacaagagaccacc 12881729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 172 - 289
Target Start/End: Complemental strand, 22889080 - 22888963
Alignment:
Q  172 aaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgttgactc 271  Q
    |||||||||||||||||||||| |||||||||| ||||||||| | ||| | |||||| ||||||| || |||||||| |||| | |||||| |||||||    
T  22889080 aaattactaagaaaaccctcctacatcagtctcatccacctctaaggaaatagaccccaagttctcattatgataaagagcttcccatgcatattgactc 22888981  T
Q  272 cttcaatgaacaagagac 289  Q
    || |||||||||||||||    
T  22888980 ctccaatgaacaagagac 22888963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 176 - 292
Target Start/End: Original strand, 34374051 - 34374167
Alignment:
Q  176 tactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgttgactccttc 275  Q
    ||||||| |||||||| | ||| |||||||||||| |||||||||||| ||||||||||||| || |||||||| | || | |||||||||||||| | |    
T  34374051 tactaaggaaaccctcttacattagtctcctccacatctgaagaactccaccccgagttctcattttgataaagagattcccatgcatgttgactcttcc 34374150  T
Q  276 aatgaacaagagaccac 292  Q
    |||||||||||||||||    
T  34374151 aatgaacaagagaccac 34374167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 167 - 237
Target Start/End: Complemental strand, 30049699 - 30049629
Alignment:
Q  167 ctataaaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctc 237  Q
    |||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  30049699 ctataaaattactaaggaagccctcctacatcagtctcctccacctctgaagaactcgaccccgagttctc 30049629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 167 - 237
Target Start/End: Complemental strand, 30051986 - 30051916
Alignment:
Q  167 ctataaaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctc 237  Q
    |||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  30051986 ctataaaattactaaggaagccctcctacatcagtctcctccacctctgaagaactcgaccccgagttctc 30051916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 172 - 289
Target Start/End: Complemental strand, 22873637 - 22873520
Alignment:
Q  172 aaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgttgactc 271  Q
    |||||| ||||||||||||||| |||||||||| ||||||||| | ||| |||| ||| ||||||| || |||||||| |||| | |||||| |||||||    
T  22873637 aaattattaagaaaaccctcctacatcagtctcatccacctctaaggaaatcgatcccaagttctcattatgataaagagcttcccatgcatattgactc 22873538  T
Q  272 cttcaatgaacaagagac 289  Q
    || |||||||||||||||    
T  22873537 ctccaatgaacaagagac 22873520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 172 - 289
Target Start/End: Complemental strand, 22910623 - 22910506
Alignment:
Q  172 aaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgttgactc 271  Q
    |||||||||||||||||||||| |||||||||| ||||||||| | ||| | |||||| ||||||| || |||||||| |||| | ||| || |||||||    
T  22910623 aaattactaagaaaaccctcctacatcagtctcatccacctctaaggaaatagaccccaagttctcattatgataaagagcttcccatgtatattgactc 22910524  T
Q  272 cttcaatgaacaagagac 289  Q
    || |||||||||||||||    
T  22910523 ctccaatgaacaagagac 22910506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 170 - 237
Target Start/End: Complemental strand, 3542026 - 3541959
Alignment:
Q  170 taaaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctc 237  Q
    ||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  3542026 taaaattactaaggaagccctcctacatcagtctcctccacctctgaagaactcgaccccgagttctc 3541959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 167 - 289
Target Start/End: Original strand, 12778664 - 12778784
Alignment:
Q  167 ctataaaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgtt 266  Q
    ||||| || ||||| |||||||||| | |||||||||||||||||||||||||||| |||||| | ||||| |||||||  || | || || ||||||||    
T  12778664 ctatagaaatactatgaaaaccctcttacatcagtctcctccacctctgaagaacttgaccccaaattctcattctgat--agagtttcctttgcatgtt 12778761  T
Q  267 gactccttcaatgaacaagagac 289  Q
    ||||||| |||||||||||||||    
T  12778762 gactcctccaatgaacaagagac 12778784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 172 - 217
Target Start/End: Complemental strand, 11194443 - 11194398
Alignment:
Q  172 aaattactaagaaaaccctcctgcatcagtctcctccacctctgaa 217  Q
    |||||||||||||||| ||||| |||||||||||||||||||||||    
T  11194443 aaattactaagaaaactctcctacatcagtctcctccacctctgaa 11194398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 193 - 249
Target Start/End: Original strand, 8047661 - 8047717
Alignment:
Q  193 tgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaag 249  Q
    |||||| ||||||||||||||||||||||| |||||||||||||  |||| ||||||    
T  8047661 tgcatcggtctcctccacctctgaagaacttgaccccgagttctaattctaataaag 8047717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 18726915 - 18726879
Alignment:
Q  167 ctataaaattactaagaaaaccctcctgcatcagtct 203  Q
    ||||||||||||||| |||||||||||||||||||||    
T  18726915 ctataaaattactaaaaaaaccctcctgcatcagtct 18726879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 183 - 247
Target Start/End: Complemental strand, 32361173 - 32361109
Alignment:
Q  183 aaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataa 247  Q
    ||||||||||| ||| ||||| |||||||||| || ||||||||| ||||||||| || ||||||    
T  32361173 aaaaccctcctacattagtcttctccacctctaaaaaactcgacctcgagttctcattatgataa 32361109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 198 - 236
Target Start/End: Complemental strand, 18720069 - 18720031
Alignment:
Q  198 cagtctcctccacctctgaagaactcgaccccgagttct 236  Q
    ||||||||||||||| |||||||||||||||||| ||||    
T  18720069 cagtctcctccacctttgaagaactcgaccccgaattct 18720031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 7e-32; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 167 - 293
Target Start/End: Complemental strand, 22716444 - 22716318
Alignment:
Q  167 ctataaaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgtt 266  Q
    |||| |||||||||| ||||| |  |||||||||||||||||| |||| |||||||||||||||||||||| || |||||||| |||| | || ||||||    
T  22716444 ctattaaattactaataaaactcaactgcatcagtctcctccagctctaaagaactcgaccccgagttctcattttgataaagagcttcccattcatgtt 22716345  T
Q  267 gactccttcaatgaacaagagaccacc 293  Q
    ||||||| |||||||||||||||||||    
T  22716344 gactcctccaatgaacaagagaccacc 22716318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 167 - 293
Target Start/End: Original strand, 22988773 - 22988899
Alignment:
Q  167 ctataaaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgtt 266  Q
    |||| |||||||||| ||||| |  |||||||||||||||||| |||| |||||||||||||||||||||| || |||||||| |||| | || ||||||    
T  22988773 ctattaaattactaataaaactcaactgcatcagtctcctccagctctaaagaactcgaccccgagttctcattttgataaagagcttcccattcatgtt 22988872  T
Q  267 gactccttcaatgaacaagagaccacc 293  Q
    ||||||| |||||||||||||||||||    
T  22988873 gactcctccaatgaacaagagaccacc 22988899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 169 - 293
Target Start/End: Complemental strand, 10494752 - 10494628
Alignment:
Q  169 ataaaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgttga 268  Q
    |||||| ||||||| |||||||| | ||||||||| ||| || |||||||||||||||| | ||||||  | ||||||||  |||| | |||||||| ||    
T  10494752 ataaaaatactaaggaaaccctcatacatcagtcttctctacttctgaagaactcgacctcaagttctgatcctgataaatagcttcccatgcatgtcga 10494653  T
Q  269 ctccttcaatgaacaagagaccacc 293  Q
    ||||| |||||||||||||||||||    
T  10494652 ctcctccaatgaacaagagaccacc 10494628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 195 - 289
Target Start/End: Complemental strand, 7635092 - 7634998
Alignment:
Q  195 catcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgttgactccttcaatgaacaagagac 289  Q
    ||||||||||||||| ||||||||||||||||||| | ||||| |||| |||||  |||  | |||||||||||||||| | |||||||||||||    
T  7635092 catcagtctcctccatctctgaagaactcgaccccaaattctcattctaataaaaagctccccatgcatgttgactcctccgatgaacaagagac 7634998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 167 - 237
Target Start/End: Original strand, 13085398 - 13085471
Alignment:
Q  167 ctataaaattactaagaaaa---ccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctc 237  Q
    ||||||||||||||| ||||   ||||||| |||||||||| |||| |||||||||||||||||||||||||||    
T  13085398 ctataaaattactaaaaaaaacaccctcctacatcagtctcttccatctctgaagaactcgaccccgagttctc 13085471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 6659640 - 6659697
Alignment:
Q  170 taaaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccc 228  Q
    |||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||||    
T  6659640 taaaattactaagaaa-ccctcctacatcagtctcctctacctctgaagaactcgaccc 6659697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 187 - 249
Target Start/End: Complemental strand, 9260375 - 9260313
Alignment:
Q  187 ccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaag 249  Q
    ||||| ||||||| ||||||| || ||| |||||||||||||||||||||  || ||||||||    
T  9260375 ccctcatgcatcaatctcctctacgtctaaagaactcgaccccgagttcttattttgataaag 9260313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 7e-29; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 172 - 293
Target Start/End: Original strand, 365863 - 365983
Alignment:
Q  172 aaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgttgactc 271  Q
    |||||||||| |||| |||||||||||| ||||||||||||||||||||||||||| ||||||||| || |||||||| || ||| ||| ||||||||||    
T  365863 aaattactaataaaatcctcctgcatcaatctcctccacctctgaagaactcgacctcgagttctcgttttgataaagagc-ttccatgtatgttgactc 365961  T
Q  272 cttcaatgaacaagagaccacc 293  Q
     | ||||||||| |||||||||    
T  365962 ttccaatgaacaggagaccacc 365983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 172 - 242
Target Start/End: Original strand, 3064051 - 3064121
Alignment:
Q  172 aaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttct 242  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  3064051 aaattactaacaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctcgttct 3064121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 184 - 293
Target Start/End: Original strand, 8536655 - 8536764
Alignment:
Q  184 aaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttct-atgcatgttgactccttcaatgaac 282  Q
    |||||||||| |||||| ||| ||||||||| ||||||||||| |||||||||  ||||||||||  | ||||| ||  |||||||||| | ||||||||    
T  8536655 aaaccctcctacatcagcctcttccacctctaaagaactcgactccgagttcttattctgataaaaag-tttctcatatatgttgactcttccaatgaac 8536753  T
Q  283 aagagaccacc 293  Q
    |||||| ||||    
T  8536754 aagagatcacc 8536764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 172 - 248
Target Start/End: Original strand, 2472969 - 2473045
Alignment:
Q  172 aaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaa 248  Q
    |||||||||| |||||| |  || |||||  |||||||| | | |||||||||||||||||||||| ||||||||||    
T  2472969 aaattactaataaaacctttgtgtatcagcttcctccacttttaaagaactcgaccccgagttctcattctgataaa 2473045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 172 - 208
Target Start/End: Original strand, 43304270 - 43304306
Alignment:
Q  172 aaattactaagaaaaccctcctgcatcagtctcctcc 208  Q
    |||||||||| ||||||||||||||||||||||||||    
T  43304270 aaattactaataaaaccctcctgcatcagtctcctcc 43304306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 190 - 235
Target Start/End: Original strand, 24516698 - 24516743
Alignment:
Q  190 tcctgcatcagtctcctccacctctgaagaactcgaccccgagttc 235  Q
    |||| ||||| |||||||||| || |||||||||||||||||||||    
T  24516698 tcctacatcaatctcctccacttcagaagaactcgaccccgagttc 24516743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 167 - 237
Target Start/End: Original strand, 45923 - 45993
Alignment:
Q  167 ctataaaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctc 237  Q
    |||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  45923 ctataaaattactaaggaagccctcctacatcagtctcctccacctctgaagaactcgaccccgagttctc 45993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 58; Significance: 4e-24; HSPs: 3)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 172 - 289
Target Start/End: Complemental strand, 10476 - 10359
Alignment:
Q  172 aaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgttgactc 271  Q
    |||||||||||||||||||||| |||||||||| ||||||||| | ||| | |||||| ||||||| || |||||||| |||| | ||| || |||||||    
T  10476 aaattactaagaaaaccctcctacatcagtctcatccacctctaaggaaatagaccccaagttctcattatgataaagagcttcccatgaatattgactc 10377  T
Q  272 cttcaatgaacaagagac 289  Q
    || |||||||||||||||    
T  10376 ctccaatgaacaagagac 10359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 184 - 293
Target Start/End: Complemental strand, 49127 - 49018
Alignment:
Q  184 aaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgttgactccttcaatgaaca 283  Q
    |||| ||||| ||||||||||||||||||||||||||||| ||||||||||||  ||||||||||     ||| |||||||||||||| | | |||||||    
T  49127 aaactctcctacatcagtctcctccacctctgaagaactcaaccccgagttcttattctgataaaagaacttccatgcatgttgactcttcctatgaaca 49028  T
Q  284 agagaccacc 293  Q
     |||| ||||    
T  49027 cgagaacacc 49018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 189 - 228
Target Start/End: Complemental strand, 37523 - 37484
Alignment:
Q  189 ctcctgcatcagtctcctccacctctgaagaactcgaccc 228  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  37523 ctcctacatcagtctcctccacctctgaagaactcgaccc 37484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 176 - 289
Target Start/End: Complemental strand, 145555 - 145442
Alignment:
Q  176 tactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgca-tgttgactcctt 274  Q
    |||||| ||||||||||| ||||||||||||||||||| |||||||| || |||||||| |  ||||||||||| | | ||  | || ||||||||||||    
T  145555 tactaataaaaccctcctacatcagtctcctccacctcagaagaacttga-cccgagttattattctgataaagagttgtccgttcattgttgactcctt 145457  T
Q  275 caatgaacaagagac 289  Q
    |||||||||||||||    
T  145456 caatgaacaagagac 145442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 185 - 289
Target Start/End: Original strand, 144177 - 144284
Alignment:
Q  185 aaccctcctgcatcagt---ctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgca-tgttgactccttcaatga 280  Q
    |||||||||||||||||   |||||||| |||||||||||| || ||||||||||  ||||||||||| | | || || || ||| ||||||||| ||||    
T  144177 aaccctcctgcatcagtctcctcctccatctctgaagaacttga-cccgagttcttattctgataaagagttgtccattcattgtcgactccttcgatga 144275  T
Q  281 acaagagac 289  Q
    |||||||||    
T  144276 acaagagac 144284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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