View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3306_low_10 (Length: 432)
Name: NF3306_low_10
Description: NF3306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3306_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 17 - 425
Target Start/End: Complemental strand, 41352165 - 41351757
Alignment:
| Q |
17 |
agctgctactaccgctgtcgttcaaatttcggagttttctcgatttgtttatctttgaacaattgatatcaacattgtcttgatcagtttcgtcgtgatt |
116 |
Q |
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| T |
41352165 |
agctgctactaccgctgtcgttcaaatttcggagttttctcgatttgtttatctttgaacaattgatatcaacattgtcttgatcagtttcgtcgtgatt |
41352066 |
T |
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| Q |
117 |
ttcaattttcatgacaaccataagtctaactatgttgcttcgacaaaatggacaaactggtggagttatagaagtagttgtcgggttcggtttgttgtag |
216 |
Q |
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| T |
41352065 |
ttcaattttcatgacaaccataagtctaactatgttgcttcgacaaaatggacaaactggtggagttatagaagtagttgtcgggttcggtttgttgtag |
41351966 |
T |
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| Q |
217 |
caacaaagggctaatgtgcattgtgcacacatttggtgaccacaattctgaacttcaattgtgcatacctgctcaaagcagatgcaacataattctgact |
316 |
Q |
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| T |
41351965 |
caacaaagggctaatgtgcattgtgcacacatttggtgaccacaattctgaacttcaattgtgcatacctgctcaaagcagatgcaacataattctgact |
41351866 |
T |
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| Q |
317 |
cactaacctgcataatatcatattccacaatgagaatgctatttcttttttggatcacatttataatgcaaattttaaacttggccaaataatcatcttt |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41351865 |
cactaacctgcataatatcatattccacaatgagaatgctatttcttttttggatcacatttataatgcaaattttaaacttggccaaataatcatcttt |
41351766 |
T |
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| Q |
417 |
cagcctttg |
425 |
Q |
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| T |
41351765 |
cagcctttg |
41351757 |
T |
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Target: chr4 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 231 - 326
Target Start/End: Complemental strand, 23714941 - 23714846
Alignment:
| Q |
231 |
tgtgcattgtgcacacatttggtgaccacaattctgaacttcaattgtgcatacctgctcaaagcagatgcaacataattctgactcactaacctg |
326 |
Q |
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| T |
23714941 |
tgtgcattgtgcacacatctggtggccacagtcttggacctcaattgtacacacctgctcaaagcagatgcagcataattccgtctcgctaacctg |
23714846 |
T |
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