View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3306_low_11 (Length: 427)

Name: NF3306_low_11
Description: NF3306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3306_low_11
NF3306_low_11
[»] chr4 (13 HSPs)
chr4 (18-283)||(3957799-3958064)
chr4 (20-201)||(4007473-4007654)
chr4 (18-100)||(3998506-3998588)
chr4 (73-276)||(4022686-4022890)
chr4 (219-275)||(3935711-3935767)
chr4 (215-274)||(3922352-3922411)
chr4 (221-275)||(3815439-3815493)
chr4 (32-130)||(3984567-3984668)
chr4 (152-275)||(3999811-3999934)
chr4 (216-275)||(4007672-4007731)
chr4 (216-275)||(3998681-3998740)
chr4 (215-276)||(3984753-3984814)
chr4 (152-201)||(3998614-3998663)
[»] chr6 (4 HSPs)
chr6 (281-417)||(8269630-8269766)
chr6 (284-417)||(795307-795440)
chr6 (284-417)||(800062-800195)
chr6 (284-417)||(8274348-8274481)
[»] chr5 (2 HSPs)
chr5 (284-417)||(19940577-19940710)
chr5 (284-417)||(19945331-19945464)
[»] chr7 (2 HSPs)
chr7 (284-417)||(6688641-6688774)
chr7 (284-417)||(6693381-6693514)
[»] chr8 (1 HSPs)
chr8 (284-417)||(26199352-26199484)


Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 18 - 283
Target Start/End: Complemental strand, 3958064 - 3957799
Alignment:
Q  18 tgtctaaatcaacttcttcatcttcagccggaggaaagaaatacatatgataatgctaagcacagtcctactccatttgttaacataatcaaataattcc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  3958064 tgtctaaatcaacttcttcatcttcagccggaggaaagaaatacatatgatgatgctaagcacagtcctactccatttgttaacataatcaaataattcc 3957965  T
Q  118 atttgttcaacgatgtttttatctcttaaggggattatgggtctgacgccaaacccttttaactccacctctggtctctctctatcaaagccaggtgttg 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  3957964 atttgttcaacgatgtttttatctcttaaggggattatgggtctgatgccaaacccttttaactccacctctggtctctctctatcaaagccgggtgttg 3957865  T
Q  218 tccttgctgtaaccttgattttaaaccttgtctacttttttgctatgctagttaggtagcgcgaac 283  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  3957864 tccttgctgtaaccttgattttaaaccttgtctgcttttttgctatgctagttaggtagcgtgaac 3957799  T

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Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 20 - 201
Target Start/End: Original strand, 4007473 - 4007654
Alignment:
Q  20 tctaaatcaacttcttcatcttcagccggaggaaagaaatacatatgataatgctaagcacagtcctactccatttgttaacataatcaaataattccat 119  Q
    |||| ||||| ||||||||||||| | | ||||  |||||||||| ||| || ||||||||||||||| |||||||||| | ||||||||| ||||||||    
T  4007473 tctagatcaaattcttcatcttcaactgtaggagggaaatacataggatgatactaagcacagtcctattccatttgttcatataatcaaacaattccat 4007572  T
Q  120 ttgttcaacgatgtttttatctcttaaggggattatgggtctgacgccaaacccttttaactccacctctggtctctctcta 201  Q
    || || || ||  || | || | || ||  | ||||||| || | |||||||||||||||||||||||||||||| ||||||    
T  4007573 tttttgaatgagattatgatatgttgagttgcttatggggcttatgccaaacccttttaactccacctctggtctttctcta 4007654  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 100
Target Start/End: Original strand, 3998506 - 3998588
Alignment:
Q  18 tgtctaaatcaacttcttcatcttcagccggaggaaagaaatacatatgataatgctaagcacagtcctactccatttgttaa 100  Q
    |||||||||||| ||||||||||||| | | ||||| |||||||||| ||  || ||||||||||||||| ||||||||||||    
T  3998506 tgtctaaatcaaattcttcatcttcaactgtaggaaggaaatacataggacgatactaagcacagtcctattccatttgttaa 3998588  T

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Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 73 - 276
Target Start/End: Original strand, 4022686 - 4022890
Alignment:
Q  73 ctaagcacagtcctactccatttgttaacataatcaaataattcc-atttgttcaacgatgtttttatctcttaaggggattatgggtctgacgccaaac 171  Q
    |||| |||||||||| |||||| ||||||||||||||| |||||| ||||||| || ||  ||  ||| | || || || ||||||| ||||  || |||    
T  4022686 ctaaccacagtcctattccattggttaacataatcaaacaattcccatttgttgaatgagattcctatatgttgagtggtttatggggctgattcctaac 4022785  T
Q  172 ccttttaactccacctctggtctctctctatcaaagcca--ggtgt-tgtccttgctgtaaccttgattttaaaccttgtctacttttttgctatgctag 268  Q
    |||||||| || ||||||||||||  |||||   || ||  | | | ||||||||| ||||||||||||||||||||| |||  || |||||||||||||    
T  4022786 ccttttaattcaacctctggtctcattctat---agacattgatttctgtccttgccgtaaccttgattttaaaccttctcttattgtttgctatgctag 4022882  T
Q  269 ttaggtag 276  Q
    ||||||||    
T  4022883 ttaggtag 4022890  T

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Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 219 - 275
Target Start/End: Complemental strand, 3935767 - 3935711
Alignment:
Q  219 ccttgctgtaaccttgattttaaaccttgtctacttttttgctatgctagttaggta 275  Q
    |||||||||||||||||||||||| |||||||  ||||||||||| |||||||||||    
T  3935767 ccttgctgtaaccttgattttaaagcttgtctgattttttgctattctagttaggta 3935711  T

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Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 215 - 274
Target Start/End: Complemental strand, 3922411 - 3922352
Alignment:
Q  215 ttgtccttgctgtaaccttgattttaaaccttgtctacttttttgctatgctagttaggt 274  Q
    |||||| ||||||||||||||||||||| |||||||  ||||||||||| ||||||||||    
T  3922411 ttgtccatgctgtaaccttgattttaaagcttgtctgattttttgctattctagttaggt 3922352  T

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Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 221 - 275
Target Start/End: Original strand, 3815439 - 3815493
Alignment:
Q  221 ttgctgtaaccttgattttaaaccttgtctacttttttgctatgctagttaggta 275  Q
    |||||||||||||||||||||| |||||||  ||||||||||| |||||||||||    
T  3815439 ttgctgtaaccttgattttaaagcttgtctgattttttgctattctagttaggta 3815493  T

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Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 32 - 130
Target Start/End: Original strand, 3984567 - 3984668
Alignment:
Q  32 tcttcatcttcagccggaggaaagaaatacatatgataatgctaagca---cagtcctactccatttgttaacataatcaaataattccatttgttcaac 128  Q
    |||||||||||||| | || || |||||||||| ||| ||||||||||   |||||||  |||||||||||| |  |||||| ||||||||||| |||||    
T  3984567 tcttcatcttcagctgcagtaaggaaatacataggatgatgctaagcagcacagtcctcttccatttgttaatacgatcaaacaattccatttgctcaac 3984666  T
Q  129 ga 130  Q
    ||    
T  3984667 ga 3984668  T

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Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 152 - 275
Target Start/End: Original strand, 3999811 - 3999934
Alignment:
Q  152 ttatgggtctgacgccaaacccttttaactccacctctggtctctctctatcaaagccaggtgttgtccttgctgtaaccttgattttaaaccttgtcta 251  Q
    ||||||| |||| ||||||||||||||||||||||| ||  ||  |||| | |||    ||  |||||||||||| |||||||||||| |||||||| |     
T  3999811 ttatggggctgatgccaaacccttttaactccacctttgaacttcctctttgaaaattgggctttgtccttgctgcaaccttgattttgaaccttgtatg 3999910  T
Q  252 cttttttgctatgctagttaggta 275  Q
     ||||| ||||| |||||||||||    
T  3999911 atttttcgctattctagttaggta 3999934  T

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Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 216 - 275
Target Start/End: Original strand, 4007672 - 4007731
Alignment:
Q  216 tgtccttgctgtaaccttgattttaaaccttgtctacttttttgctatgctagttaggta 275  Q
    ||||||||||||||||||||||||||||||||| |  || |||||||  |||||||||||    
T  4007672 tgtccttgctgtaaccttgattttaaaccttgtatgattctttgctactctagttaggta 4007731  T

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Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 216 - 275
Target Start/End: Original strand, 3998681 - 3998740
Alignment:
Q  216 tgtccttgctgtaaccttgattttaaaccttgtctacttttttgctatgctagttaggta 275  Q
    |||||||||||||||||| |||||||||||||| |  || |||||||  |||||||||||    
T  3998681 tgtccttgctgtaaccttaattttaaaccttgtatgattctttgctacactagttaggta 3998740  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 276
Target Start/End: Original strand, 3984753 - 3984814
Alignment:
Q  215 ttgtccttgctgtaaccttgattttaaaccttgtctacttttttgctatgctagttaggtag 276  Q
    ||||||||||||||||||||||||||| |  |||||   |||| |||||||| |||||||||    
T  3984753 ttgtccttgctgtaaccttgattttaacctgtgtctgacttttggctatgctggttaggtag 3984814  T

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Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 201
Target Start/End: Original strand, 3998614 - 3998663
Alignment:
Q  152 ttatgggtctgacgccaaacccttttaactccacctctggtctctctcta 201  Q
    ||||||| || | |||||||||||||||||||||||| ||||| ||||||    
T  3998614 ttatggggcttatgccaaacccttttaactccacctcgggtctttctcta 3998663  T

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Target: chr6 (Bit Score: 133; Significance: 5e-69; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 281 - 417
Target Start/End: Original strand, 8269630 - 8269766
Alignment:
Q  281 aactgttggtgaacattgtgtgaggacccacatgcacgtgggataaccagccaaagcaatttgctgaagcaaattgtcacacaaagtctcatgcatttat 380  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8269630 aactgttggtgaacattgtgtaaggacccacatgcacgtgggataaccagccaaagcaatttgctgaagcaaattgtcacacaaagtctcatgcatttat 8269729  T
Q  381 tataggttgcatttttctttcaaatagtaagcctatg 417  Q
    |||||||||||||||||||||||||||||||||||||    
T  8269730 tataggttgcatttttctttcaaatagtaagcctatg 8269766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 284 - 417
Target Start/End: Complemental strand, 795440 - 795307
Alignment:
Q  284 tgttggtgaacattgtgtgaggacccacatgcacgtgggataaccagccaaagcaatttgctgaagcaaattgtcacacaaagtctcatgcatttattat 383  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  795440 tgttggtgaacattgtgtaaggacccacatgcacgtgggataaccagccaaagcaatttgctgaagcaaattgtcacacaaagtctcatgcatttattat 795341  T
Q  384 aggttgcatttttctttcaaatagtaagcctatg 417  Q
    ||||||||||||||||||||||||||||||||||    
T  795340 aggttgcatttttctttcaaatagtaagcctatg 795307  T

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Target: chr6; HSP #3
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 284 - 417
Target Start/End: Complemental strand, 800195 - 800062
Alignment:
Q  284 tgttggtgaacattgtgtgaggacccacatgcacgtgggataaccagccaaagcaatttgctgaagcaaattgtcacacaaagtctcatgcatttattat 383  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  800195 tgttggtgaacattgtgtaaggacccacatgcacgtgggataaccagccaaagcaatttgctgaagcaaattgtcacacaaagtctcatgcatttattat 800096  T
Q  384 aggttgcatttttctttcaaatagtaagcctatg 417  Q
    ||||||||||||||||||||||||||||||||||    
T  800095 aggttgcatttttctttcaaatagtaagcctatg 800062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 284 - 417
Target Start/End: Original strand, 8274348 - 8274481
Alignment:
Q  284 tgttggtgaacattgtgtgaggacccacatgcacgtgggataaccagccaaagcaatttgctgaagcaaattgtcacacaaagtctcatgcatttattat 383  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8274348 tgttggtgaacattgtgtaaggacccacatgcacgtgggataaccagccaaagcaatttgctgaagcaaattgtcacacaaagtctcatgcatttattat 8274447  T
Q  384 aggttgcatttttctttcaaatagtaagcctatg 417  Q
    ||||||||||||||||||||||||||||||||||    
T  8274448 aggttgcatttttctttcaaatagtaagcctatg 8274481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 130; Significance: 3e-67; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 284 - 417
Target Start/End: Original strand, 19940577 - 19940710
Alignment:
Q  284 tgttggtgaacattgtgtgaggacccacatgcacgtgggataaccagccaaagcaatttgctgaagcaaattgtcacacaaagtctcatgcatttattat 383  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19940577 tgttggtgaacattgtgtaaggacccacatgcacgtgggataaccagccaaagcaatttgctgaagcaaattgtcacacaaagtctcatgcatttattat 19940676  T
Q  384 aggttgcatttttctttcaaatagtaagcctatg 417  Q
    ||||||||||||||||||||||||||||||||||    
T  19940677 aggttgcatttttctttcaaatagtaagcctatg 19940710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 284 - 417
Target Start/End: Original strand, 19945331 - 19945464
Alignment:
Q  284 tgttggtgaacattgtgtgaggacccacatgcacgtgggataaccagccaaagcaatttgctgaagcaaattgtcacacaaagtctcatgcatttattat 383  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19945331 tgttggtgaacattgtgtaaggacccacatgcacgtgggataaccagccaaagcaatttgctgaagcaaattgtcacacaaagtctcatgcatttattat 19945430  T
Q  384 aggttgcatttttctttcaaatagtaagcctatg 417  Q
    ||||||||||||||||||||||||||||||||||    
T  19945431 aggttgcatttttctttcaaatagtaagcctatg 19945464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 122; Significance: 2e-62; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 284 - 417
Target Start/End: Original strand, 6688641 - 6688774
Alignment:
Q  284 tgttggtgaacattgtgtgaggacccacatgcacgtgggataaccagccaaagcaatttgctgaagcaaattgtcacacaaagtctcatgcatttattat 383  Q
    |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  6688641 tgttggtgaacattgtttaaggacccacatgcacgtgggataaccagccaaagcaatttactgaagcaaattgtcacacaaagtctcatgcatttattat 6688740  T
Q  384 aggttgcatttttctttcaaatagtaagcctatg 417  Q
    ||||||||||||||||||||||||||||||||||    
T  6688741 aggttgcatttttctttcaaatagtaagcctatg 6688774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 284 - 417
Target Start/End: Original strand, 6693381 - 6693514
Alignment:
Q  284 tgttggtgaacattgtgtgaggacccacatgcacgtgggataaccagccaaagcaatttgctgaagcaaattgtcacacaaagtctcatgcatttattat 383  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||    
T  6693381 tgttggtgaacattgtgtaaggacccacatgcacgtgggataaccagccaaaacaatttgttgaaacaaattgtcacacaaagtctcatgcatttattat 6693480  T
Q  384 aggttgcatttttctttcaaatagtaagcctatg 417  Q
    ||||||||||||||||||||||||||||||||||    
T  6693481 aggttgcatttttctttcaaatagtaagcctatg 6693514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 118; Significance: 5e-60; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 284 - 417
Target Start/End: Original strand, 26199352 - 26199484
Alignment:
Q  284 tgttggtgaacattgtgtgaggacccacatgcacgtgggataaccagccaaagcaatttgctgaagcaaattgtcacacaaagtctcatgcatttattat 383  Q
    |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  26199352 tgttggtgaacattgtgtaaggacccacatgcacgtgg-ataaccagccaaagcaatttgctgaagcaaattgtcacacaaagtctcatgcatatattat 26199450  T
Q  384 aggttgcatttttctttcaaatagtaagcctatg 417  Q
    ||||||||||||||||||||||||||||||||||    
T  26199451 aggttgcatttttctttcaaatagtaagcctatg 26199484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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