View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3306_low_16 (Length: 334)
Name: NF3306_low_16
Description: NF3306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3306_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 18 - 303
Target Start/End: Original strand, 50423161 - 50423450
Alignment:
| Q |
18 |
gttttagaggaggcgatataatatagtaatagattgaaaagnnnnnnnnnnca----ctaaaaggaacatatgcaaaaatttaaaatgtacaaatacaag |
113 |
Q |
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| T |
50423161 |
gttttagaggaggcgatataatatagtaatagattgaaaagaaaaaaaaaacaaacactaaaaggaacatatgcaaaaatttaaaatgtacaaatacaag |
50423260 |
T |
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| Q |
114 |
aaacaatgtattgcaacgtgcaacgacgtattattattagtgtttatctataccgtgacaattataattattgaatgttatgtgaaatgtgtatttgatt |
213 |
Q |
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| T |
50423261 |
aaacaatgtattgcaacgtgcaatgacgtattattattagtgtttatctataccgtgacaattataattattgaatgttatgtgaaatgtgtatttgatt |
50423360 |
T |
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| Q |
214 |
gtgtgatcttgtgaaattatcatgaatagaacttattgtgccttagtttagacttaagagtggagtttgtggaggaggtgaaggtaatct |
303 |
Q |
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| T |
50423361 |
gtgtgatcttgtgaaattatcgtgaatagaacttattgtgccttagtttagacttaagagtggagtttgtggaggaggccaaggtaatct |
50423450 |
T |
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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 233
Target Start/End: Original strand, 14425772 - 14425825
Alignment:
| Q |
182 |
tattgaatgttatgtgaa--atgtgtatttgattgtgtgatcttgtgaaattat |
233 |
Q |
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| T |
14425772 |
tattgaatattatgtgaagtatatgtatttaattgtgtgatcttgtgaaattat |
14425825 |
T |
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