View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3306_low_17 (Length: 321)
Name: NF3306_low_17
Description: NF3306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3306_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 35476891 - 35476637
Alignment:
| Q |
1 |
ggtgggggaagtggtgaggaacagataacgaaaatgaggtttgaaaggaaaccacaccacatgaacgatggggatggacatggacacggtggtggggtaa |
100 |
Q |
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| T |
35476891 |
ggtgggggaagtggtgagggacagataacgaaaatgaggtttgaaaggaaaccacaccacatgaacgatggggatggacatggacacggtggtggggtaa |
35476792 |
T |
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| Q |
101 |
ttctataagcatggacctatatctatatatggtccactaccctagctaaataatactataaaacaaatgtgatgtattagtttgaccaaaaaatatgcac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
35476791 |
ttctataagcatggacctatatctatatatggtccactaccctagctaaataatactacaaaacaaatgtgatgtattagtttgaccaaaaaatatgcac |
35476692 |
T |
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| Q |
201 |
caacaatatacnnnnnnncttttagaaatgctaacttgtatccttaaggcacaag |
255 |
Q |
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||||||||||| ||||||||||||||||||||| ||||||||||||||| |
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| T |
35476691 |
caacaatatactttatttcttttagaaatgctaacttgtgtccttaaggcacaag |
35476637 |
T |
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