View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3306_low_19 (Length: 308)
Name: NF3306_low_19
Description: NF3306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3306_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 3 - 292
Target Start/End: Complemental strand, 23523864 - 23523575
Alignment:
| Q |
3 |
gagaacaaaaatgactgaaaatagaagtgtgaaattctttcatatttcacactatgattttttcttataatagaaaaataaatggaatatatagcaactc |
102 |
Q |
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| T |
23523864 |
gagaacaaaaatgattgaaaatagaagtgtgaaattctttcatatttcacactatgattttttcttataatagaaaaataaatggaatatataacaactc |
23523765 |
T |
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| Q |
103 |
tttgagtttagaaacaatgtttcatttcatggtgtgaaaaaataattagaaggatcattgaaacaaattctaaaaggaaggtgcaagtataataaaatta |
202 |
Q |
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| T |
23523764 |
tttgagtttagaaacaatgtttcatttcatggtgtgaaaaaataattagaaggatcattgaaacaaattctaaaaggaaggtgcaagtataataaaatta |
23523665 |
T |
|
| Q |
203 |
atacctggtgtcaatggattccgactcataatataaaaagaatcagaaacaattagttccaacatacgtaactaaaaggaagaaatttct |
292 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23523664 |
atacctggtgtcaatggattccgacttataatataaaaagaatcagaaacaattagttccaacatacgtaactaaaaggaagaaatttct |
23523575 |
T |
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