View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3306_low_2 (Length: 556)
Name: NF3306_low_2
Description: NF3306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3306_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 153; Significance: 8e-81; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 153; E-Value: 8e-81
Query Start/End: Original strand, 11 - 167
Target Start/End: Original strand, 46870274 - 46870430
Alignment:
| Q |
11 |
agcagagagagatgaagtaatgagtggaggtaaaaagcaatgggatatggatgaagctgtgaaagctcacatgtcattttgcagaaaattcaaatctaac |
110 |
Q |
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| T |
46870274 |
agcagtgagagatgaagtaatgagtggaggtaaaaagcaatgggatatggatgaagctgtgaaagctcacatgtcattttgcagaaaattcaaatctaac |
46870373 |
T |
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| Q |
111 |
cctgcagttagagtagcagaaggtatgagacagatgctaagaagaagatcaaatgat |
167 |
Q |
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| T |
46870374 |
cctgcagttagagtagcagaaggtatgagacagatgctaagaagaagatcaaatgat |
46870430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 201 - 345
Target Start/End: Original strand, 46870464 - 46870608
Alignment:
| Q |
201 |
aagaagtattcaaggtcaccaaccacttctcaagttggagattcttccactttttctttgtattgatgatgagaaaccaagaagcagagtatactctgtt |
300 |
Q |
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| T |
46870464 |
aagaagtattcaaggtcaccaaccacttctcaagttggagattcttccactttttctttgtattgatgatgagaaaccaagaagcagagtatactctgtt |
46870563 |
T |
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| Q |
301 |
tgaggcagaggatactctgttttggttagaataaaaagttaattg |
345 |
Q |
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| T |
46870564 |
tgaggcagaggatactctgttttggttagaataaaaagttaattg |
46870608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 459 - 549
Target Start/End: Original strand, 46870722 - 46870812
Alignment:
| Q |
459 |
accaactgattcctaatccctttgtcatcttttgtgttagaatactgttaacttattaacaactacataacttgttaagcttttgcagtgt |
549 |
Q |
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| T |
46870722 |
accaactgattcctaatccctttgtcatcttttgtgttagaatactgttaacttattaacaactacataacttgttaatcttttgcagtgt |
46870812 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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