View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3306_low_24 (Length: 293)
Name: NF3306_low_24
Description: NF3306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3306_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-115; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 16 - 277
Target Start/End: Complemental strand, 2555603 - 2555344
Alignment:
| Q |
16 |
ctcaagttaaatttccacaaatgttaaatattttaaggataaagtccttagctataaaaatagtgttttgcatttacttgtacaaaaatgtttagtcaaa |
115 |
Q |
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| T |
2555603 |
ctcaagttaaatttccacaaatgttaaacattttaaggataaagaccttagctataaaaatagtgttttgcatttacttatacaaaaatgtttagtcaaa |
2555504 |
T |
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| Q |
116 |
atttannnnnnnnaattaactttttcacatttttcatatcaatttctatacgacacttataaaataatgatcataatatataaactttacttaccggatc |
215 |
Q |
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| T |
2555503 |
atttatttattttaattaactttttcacgtttttcatatcaatttctatacgacacttataaaataatgatcataatata--aactttacttaccggatc |
2555406 |
T |
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| Q |
216 |
ttatcatagaattttctatcaagacattactggaacgagaaatgtcaaacccatcagtgttg |
277 |
Q |
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| T |
2555405 |
ttatcatagaattttctatcaagacattactggaacgagaaatgtcaaacccatcagtgttg |
2555344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 136 - 277
Target Start/End: Complemental strand, 2565152 - 2565018
Alignment:
| Q |
136 |
tttttcacatttttcatatcaatttctatacgacacttataaaataatgatcataatatataaactttacttaccggatcttatcatagaattttctatc |
235 |
Q |
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|||| |||||||||||||||||||||||| ||||||| ||||||| ||| || |||||||||||||||||||||||||||| |||||||||||||| |
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| T |
2565152 |
ttttccacatttttcatatcaatttctat--gacacttctaaaata---atctta--atataaactttacttaccggatcttatcttagaattttctatc |
2565060 |
T |
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| Q |
236 |
aagacattactggaacgagaaatgtcaaacccatcagtgttg |
277 |
Q |
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| T |
2565059 |
gagatattattggaacgagaaatgtcaaatccatcagtgttg |
2565018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 16 - 108
Target Start/End: Complemental strand, 2565242 - 2565150
Alignment:
| Q |
16 |
ctcaagttaaatttccacaaatgttaaatattttaaggataaagtccttagctataaaaatagtgttttgcatttacttgtacaaaaatgttt |
108 |
Q |
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|||||||||||||| | ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| ||| || |||||| |
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| T |
2565242 |
ctcaagttaaattttcccaaatgttaaatattttaaggataatgaccttagctataaaaatagtgttttgcatttacttatactaatatgttt |
2565150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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