View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3306_low_27 (Length: 286)
Name: NF3306_low_27
Description: NF3306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3306_low_27 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 1936557 - 1936828
Alignment:
| Q |
1 |
aatccataaaactgatgtattgagactcctgtcctaaacatttaatacnnnnnnn--cacgagtttaacacaaaaaagagagaatttagcnnnnnnnnnn |
98 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||| |
|
|
| T |
1936557 |
aatccataaaactgatgtattgagactcgtgtcctaaacatttaacacaaaaaaaaacacgagtttaacacaaaaaagagagaatttagcacaaaaaaaa |
1936656 |
T |
|
| Q |
99 |
--tagagaattgattcgtgaacatccttatgtgtcaaaccactattgtaccactcatatgtaacattttttactaattttgagcacatgtttatgtgaac |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1936657 |
aatagagaattgattcgtgaacatccttatgtgtcaaaccactattgtaccactcatatgtaacattttttactaattttgagcacatgtttatgtgaac |
1936756 |
T |
|
| Q |
197 |
atcattgtttcatttcgagcacatgctcaattgttcttctctcccattgtactattcttggtgtgccaatct |
268 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1936757 |
atcattgtttcatttcgagcacatgctcaattgttcttctctcccattgtactattcttggtgtgccaatct |
1936828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 101 - 175
Target Start/End: Original strand, 34819621 - 34819695
Alignment:
| Q |
101 |
gagaattgattcgtgaacatccttatgtgtcaaaccactattgtaccactcatatgtaacattttttactaattt |
175 |
Q |
| |
|
|||||||||||| | ||||| |||||||| ||||||||| ||||||||||||||||| |||||||| |||||| |
|
|
| T |
34819621 |
gagaattgattcataaacatgcttatgtggcaaaccactcttgtaccactcatatgtggtattttttattaattt |
34819695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 101 - 175
Target Start/End: Original strand, 37863950 - 37864024
Alignment:
| Q |
101 |
gagaattgattcgtgaacatccttatgtgtcaaaccactattgtaccactcatatgtaacattttttactaattt |
175 |
Q |
| |
|
|||||||||||| | ||||| |||||||| ||||||||| ||||||||||||||||| |||||||| |||||| |
|
|
| T |
37863950 |
gagaattgattcataaacatacttatgtggcaaaccactcttgtaccactcatatgtggtattttttattaattt |
37864024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University