View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3306_low_28 (Length: 285)

Name: NF3306_low_28
Description: NF3306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3306_low_28
NF3306_low_28
[»] chr3 (3 HSPs)
chr3 (199-285)||(1223570-1223656)
chr3 (78-114)||(1223753-1223789)
chr3 (1-33)||(1223834-1223866)
[»] chr5 (2 HSPs)
chr5 (199-285)||(41960833-41960921)
chr5 (78-136)||(41962254-41962312)


Alignment Details
Target: chr3 (Bit Score: 87; Significance: 9e-42; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 199 - 285
Target Start/End: Complemental strand, 1223656 - 1223570
Alignment:
Q  199 tcaatgatgaattgatttgaatggtaaaagactaaaactcctaagcatatagttagatctttgatttttgtctgacttatcttgtat 285  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1223656 tcaatgatgaattgatttgaatggtaaaagactaaaactcctaagcatatagttagatctttgatttttgtctgacttatcttgtat 1223570  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 78 - 114
Target Start/End: Complemental strand, 1223789 - 1223753
Alignment:
Q  78 tgtgttgaagcgggaatagttagttaaagtttgtttc 114  Q
    |||||||||||||||||||||||||||||||||||||    
T  1223789 tgtgttgaagcgggaatagttagttaaagtttgtttc 1223753  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 1223866 - 1223834
Alignment:
Q  1 gggttaagggatgcattatgtggcggttgcttc 33  Q
    |||||||||||||||||||||||||||||||||    
T  1223866 gggttaagggatgcattatgtggcggttgcttc 1223834  T

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Target: chr5 (Bit Score: 62; Significance: 8e-27; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 199 - 285
Target Start/End: Complemental strand, 41960921 - 41960833
Alignment:
Q  199 tcaatgatgaattgatttgaatggtaaaagactaaaactcctaagcatatagttagatctttg--atttttgtctgacttatcttgtat 285  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||| |  ||||||||||||||||||||||||    
T  41960921 tcaatgatgaattgattcgaatggtaaaagactaaaactcctaagcatataattaaatcttcgatatttttgtctgacttatcttgtat 41960833  T

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Target: chr5; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 78 - 136
Target Start/End: Complemental strand, 41962312 - 41962254
Alignment:
Q  78 tgtgttgaagcgggaatagttagttaaagtttgtttcggtttaaacggttctaaactaa 136  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41962312 tgtgttgaagcgggaatagttagttaaagtttgtttcggtttaaacggttctaaactaa 41962254  T

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