View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3306_low_29 (Length: 269)
Name: NF3306_low_29
Description: NF3306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3306_low_29 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 16 - 258
Target Start/End: Original strand, 47126637 - 47126882
Alignment:
| Q |
16 |
agttataaggatccagttaaactttaccttatattgtgttaaaacatatctctactataaagtaaaattcacgttactacaccaacgacattgaatgatt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47126637 |
agttataaggatccagttaaactttaccttatattgtgttaaaacatatctctactataaagtaaaattcacgttactacaccaacgacattgaatgatt |
47126736 |
T |
|
| Q |
116 |
tgagctcaaattctactaatatggtcgtataactttatcaaatgataagaaatattttagaaaaatataatgacatt---tagtattctctaaaaatttc |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||||| |
|
|
| T |
47126737 |
tgagctcaaattctactaatatggtcgtataactttatcaaatgataagaaatattttagaaaaatttaatgacatttagtagtattctcttaaaattta |
47126836 |
T |
|
| Q |
213 |
tcgatgtgcatataaagaaaataaaatccttgtgtattgtgttcat |
258 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
47126837 |
tcgatgtgcatataaagaaaataaaatcattgtgtattgtgttcat |
47126882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University