View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3306_low_3 (Length: 550)
Name: NF3306_low_3
Description: NF3306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3306_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 335; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 9 - 383
Target Start/End: Complemental strand, 9352693 - 9352319
Alignment:
| Q |
9 |
agcagagaatagcagtttgttcaaattttattacacaacaatgttgtagcaccagcaccaccataggcgctattgaacaaaaggtgtaaaaggaaaatag |
108 |
Q |
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|||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| ||||||||||| ||||||| ||||||||||||||| |
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| T |
9352693 |
agcagaaaatagcagtttgttcaaattttaatacacaacaatgttatagcaccagcaccaccatcggcgctattgatcaaaaggcgtaaaaggaaaatag |
9352594 |
T |
|
| Q |
109 |
cagtttgtcgatcacatatcgcggaacaatagccatttgttcaaattccagtacgcgctactatttaacattgaaaatgaaaataatcagaagaaggatg |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||||||||| |
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| T |
9352593 |
cagtttgtcgatcacatatcgcggaacaatagccatttgttcaaattccagtacgcgccactatttaacactgaaaaggaaaataatcagaagaaggatg |
9352494 |
T |
|
| Q |
209 |
ttactctttcaaggtgttgtagaaaggaggatttgaattggcgaacaccacagccacttgaagtacagtccaacctgtgagctttctcaaaagcataaaa |
308 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9352493 |
ttactctttcaaggtgttgtagaaaggcggatttgaattggcgaacaccacagccacttgaagtacagtccaacctgtgagctttctcaaaagcataaaa |
9352394 |
T |
|
| Q |
309 |
gcgacctacaatacaataaaatcgaaatcaccaaacaaaacatagcataacatgacctatgagtaattcatcaat |
383 |
Q |
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| T |
9352393 |
gcgacctacaatacaataaaatcgaaatcaccaaacaaaacatagcataacatgacctatgagtaattcatcaat |
9352319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 419 - 534
Target Start/End: Complemental strand, 9352319 - 9352204
Alignment:
| Q |
419 |
ttcaatgttgacctggtgagttactctataatctgtcattgtaacaatgaaaacggaagagaatagaagttgaagaaacacttacataaataagcaactc |
518 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9352319 |
ttcaatgttgacctggtgagttactctataatctgtcattgtaacaatgaaaatggaagagaatagaagttgaagaaacacttacataaataagcaactc |
9352220 |
T |
|
| Q |
519 |
taggatgagtcttttc |
534 |
Q |
| |
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|||||||||||||||| |
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| T |
9352219 |
taggatgagtcttttc |
9352204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 200 - 350
Target Start/End: Complemental strand, 650454 - 650303
Alignment:
| Q |
200 |
agaaggatgttactctttcaaggtgttgtagaaaggaggatttgaattggcgaacaccacagccacttgaagtacagtccaacc-tgtgagctttctcaa |
298 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||||| | |||||||||||||||||| |||||||||||| || |||| | ||||||||||||| |
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| T |
650454 |
agaaggatgttactctttcaaggcgttgaagaaaggcagtcttgaattggcgaacaccatgaccacttgaagtaggatcaaaccttatgagctttctcaa |
650355 |
T |
|
| Q |
299 |
aagcataaaagcgacctacaatacaataaaatcgaaatcaccaaacaaaaca |
350 |
Q |
| |
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| || ||||||| ||||||||| |||||| ||||| ||||||||||| |||| |
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| T |
650354 |
aggcgtaaaagccacctacaatgcaataatatcgagatcaccaaacacaaca |
650303 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 240 - 319
Target Start/End: Original strand, 426515 - 426594
Alignment:
| Q |
240 |
tttgaattggcgaacaccacagccacttgaagtacagtccaacctgtgagctttctcaaaagcataaaagcgacctacaa |
319 |
Q |
| |
|
||||||||| |||||||||| ||||| |||||| || ||||| ||||||||||||||||||||||| |||||||||| |
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| T |
426515 |
tttgaattgacgaacaccacgaccactagaagtaggatctaacctatgagctttctcaaaagcataaaatcgacctacaa |
426594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 496 - 534
Target Start/End: Complemental strand, 650245 - 650207
Alignment:
| Q |
496 |
acacttacataaataagcaactctaggatgagtcttttc |
534 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||| |
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|
| T |
650245 |
acacttacataaataagcaactttaggatgagtcttttc |
650207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 497 - 534
Target Start/End: Original strand, 426665 - 426702
Alignment:
| Q |
497 |
cacttacataaataagcaactctaggatgagtcttttc |
534 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| |
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|
| T |
426665 |
cacttacataaataagcaactctaggatgagttttttc |
426702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 123 - 152
Target Start/End: Complemental strand, 46766727 - 46766698
Alignment:
| Q |
123 |
catatcgcggaacaatagccatttgttcaa |
152 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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| T |
46766727 |
catatcgcggaacaatagccatttgttcaa |
46766698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 6e-17; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 240 - 321
Target Start/End: Complemental strand, 52596659 - 52596578
Alignment:
| Q |
240 |
tttgaattggcgaacaccacagccacttgaagtacagtccaacctgtgagctttctcaaaagcataaaagcgacctacaata |
321 |
Q |
| |
|
||||||||| |||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||| || ||||||||| |
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|
| T |
52596659 |
tttgaattgacgaacaccacgaccacttgaagtggggtccaacctatgagctttctcaaaagcataaaaccggcctacaata |
52596578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 493 - 534
Target Start/End: Complemental strand, 52596158 - 52596117
Alignment:
| Q |
493 |
gaaacacttacataaataagcaactctaggatgagtcttttc |
534 |
Q |
| |
|
|||| ||||||| | ||||||||||||||||||||||||||| |
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| T |
52596158 |
gaaatacttacagagataagcaactctaggatgagtcttttc |
52596117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 122 - 156
Target Start/End: Complemental strand, 25100491 - 25100457
Alignment:
| Q |
122 |
acatatcgcggaacaatagccatttgttcaaattc |
156 |
Q |
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|||||||||||||||||||| |||||||||||||| |
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| T |
25100491 |
acatatcgcggaacaatagcaatttgttcaaattc |
25100457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 129 - 157
Target Start/End: Original strand, 9634982 - 9635010
Alignment:
| Q |
129 |
gcggaacaatagccatttgttcaaattcc |
157 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
9634982 |
gcggaacaatagccatttgttcaaattcc |
9635010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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