View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3306_low_33 (Length: 250)

Name: NF3306_low_33
Description: NF3306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3306_low_33
NF3306_low_33
[»] chr6 (4 HSPs)
chr6 (1-240)||(2602243-2602482)
chr6 (171-242)||(19294667-19294738)
chr6 (105-208)||(17261858-17261962)
chr6 (114-209)||(33234694-33234790)
[»] chr8 (3 HSPs)
chr8 (114-242)||(2874854-2874983)
chr8 (102-242)||(13097701-13097841)
chr8 (114-182)||(2797251-2797320)
[»] chr3 (1 HSPs)
chr3 (166-242)||(25092132-25092208)
[»] chr7 (2 HSPs)
chr7 (171-242)||(44572283-44572354)
chr7 (125-219)||(11809061-11809156)
[»] chr2 (3 HSPs)
chr2 (171-242)||(26576401-26576472)
chr2 (199-242)||(17651633-17651676)
chr2 (102-181)||(41849267-41849347)
[»] chr4 (1 HSPs)
chr4 (171-236)||(54305958-54306023)
[»] chr1 (1 HSPs)
chr1 (166-242)||(48632329-48632405)


Alignment Details
Target: chr6 (Bit Score: 236; Significance: 1e-130; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 2602243 - 2602482
Alignment:
Q  1 tcaacatttctcacagatttaactcttgaatctgttgtgtgtggaagtaaagaaaaataatcctgatatttatttgagttgcccgacacgcctatatgta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  2602243 tcaacatttctcacagatttaactcttgaatctgttgtgtgtggaagtaaagaaaaataatcctgatatttatttgagttgcccgacacgcctatatgtg 2602342  T
Q  101 ttataggtgtcaaacaccggtccaaggagtgtcaaaataaagtagaaaacaactcattttggcacttgtccgacacgtgtcgtatgtgtgtcatagcagt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2602343 ttataggtgtcaaacaccggtccaaggagtgtcaaaataaagtagaaaacaactcattttggcacttgtccgacacgtgtcgtatgtgtgtcatagcagt 2602442  T
Q  201 gtcggacactgcgacacgcttaatcctaaaggtgtctgtg 240  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  2602443 gtcggacactgcgacacgcttaatcctaaaggtgtctgtg 2602482  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 171 - 242
Target Start/End: Original strand, 19294667 - 19294738
Alignment:
Q  171 cgacacgtgtcgtatgtgtgtcatagcagtgtcggacactgcgacacgcttaatcctaaaggtgtctgtgct 242  Q
    |||||||||||||| | |||||| || |||||||||||| ||||||||| |||||||| ||||||| |||||    
T  19294667 cgacacgtgtcgtacgggtgtcacaggagtgtcggacaccgcgacacgcctaatcctagaggtgtcggtgct 19294738  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 208
Target Start/End: Original strand, 17261858 - 17261962
Alignment:
Q  105 aggtgtcaaacaccggtccaaggagtgtcaaaataaagtagaaaacaactcattttggca-cttgtccgacacgtgtcgtatgtgtgtcatagcagtgtc 203  Q
    |||||||  ||||||||| ||| |||||| |||||||| |||||||| || |||| || | |||||| ||||||||||||| | ||||| ||| |||||     
T  17261858 aggtgtcggacaccggtctaagaagtgtcgaaataaagaagaaaacaccttatttaggaatcttgtcggacacgtgtcgtacgagtgtcgtaggagtgtt 17261957  T
Q  204 ggaca 208  Q
    |||||    
T  17261958 ggaca 17261962  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 209
Target Start/End: Complemental strand, 33234790 - 33234694
Alignment:
Q  114 acaccggtccaaggagtgtcaaaataaagtagaaaacaactcattt-tggcacttgtccgacacgtgtcgtatgtgtgtcatagcagtgtcggacac 209  Q
    |||||||||||| |||| || || |||||  |||||||||| |||| || ||||||||| |||||||||||| | ||||| |||  ||||| |||||    
T  33234790 acaccggtccaaagagtatcgaagtaaagatgaaaacaacttatttatgacacttgtccaacacgtgtcgtacgagtgtcttagatgtgtccgacac 33234694  T

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Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 114 - 242
Target Start/End: Complemental strand, 2874983 - 2874854
Alignment:
Q  114 acaccggtccaaggagtgtcaaaataaagtagaaaacaactcattttg-gcacttgtccgacacgtgtcgtatgtgtgtcatagcagtgtcggacactgc 212  Q
    ||||| ||||||||||||||||||||||| ||||||| | | |||| |  |||||||| ||||||||| ||||| |||||||||  |||||||| || ||    
T  2874983 acaccagtccaaggagtgtcaaaataaagaagaaaaccatttatttagtacacttgtctgacacgtgttgtatgagtgtcataggcgtgtcggagaccgc 2874884  T
Q  213 gacacgcttaatcctaaaggtgtctgtgct 242  Q
    |||| || |||||||| ||||||| |||||    
T  2874883 gacatgcgtaatcctagaggtgtccgtgct 2874854  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 102 - 242
Target Start/End: Original strand, 13097701 - 13097841
Alignment:
Q  102 tataggtgtcaaacaccggtccaaggagtgtcaaaataaagtagaaaacaactcattttggc-acttgtccgacacgtgtcgtatgtgtgtcatagcagt 200  Q
    ||||||||||  ||||||||| ||||||||||| | ||||| |||||| | || |||| ||  |||| |||||| ||||||||| | ||||||||  |||    
T  13097701 tataggtgtcgcacaccggtctaaggagtgtcacagtaaagaagaaaatatcttatttaggatacttatccgactcgtgtcgtacgagtgtcatatgagt 13097800  T
Q  201 gtcggacactgcgacacgcttaatcctaaaggtgtctgtgct 242  Q
    ||||||||| ||||||||| |||| ||| | |||||||||||    
T  13097801 gtcggacaccgcgacacgcctaattctaga-gtgtctgtgct 13097841  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 182
Target Start/End: Original strand, 2797251 - 2797320
Alignment:
Q  114 acaccggtccaaggagtgtcaaaataaagtagaaaacaactcattttg-gcacttgtccgacacgtgtcg 182  Q
    ||||| ||||||||||||||||||||||| ||||||| | | |||| |  |||||||| |||||||||||    
T  2797251 acaccagtccaaggagtgtcaaaataaaggagaaaaccatttatttagtacacttgtctgacacgtgtcg 2797320  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 166 - 242
Target Start/End: Complemental strand, 25092208 - 25092132
Alignment:
Q  166 ttgtccgacacgtgtcgtatgtgtgtcatagcagtgtcggacactgcgacacgcttaatcctaaaggtgtctgtgct 242  Q
    ||||||||||||||| ||| | ||||||||| |||||| ||||||||||||| | || ||||| ||||||| |||||    
T  25092208 ttgtccgacacgtgttgtacgagtgtcatagaagtgtcagacactgcgacacacctagtcctagaggtgtccgtgct 25092132  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 171 - 242
Target Start/End: Complemental strand, 44572354 - 44572283
Alignment:
Q  171 cgacacgtgtcgtatgtgtgtcatagcagtgtcggacactgcgacacgcttaatcctaaaggtgtctgtgct 242  Q
    |||||||||||||| | ||||||||| |||||||||||| ||||||||| || || || ||||||| |||||    
T  44572354 cgacacgtgtcgtacgagtgtcataggagtgtcggacaccgcgacacgcctagtcgtagaggtgtccgtgct 44572283  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 219
Target Start/End: Complemental strand, 11809156 - 11809061
Alignment:
Q  125 aggagtgtcaaaataaagtagaaaacaactcattt-tggcacttgtccgacacgtgtcgtatgtgtgtcatagcagtgtcggacactgcgacacgc 219  Q
    |||| ||||||| ||||| |||||| ||||  ||| || |||||||||||||| |||||||||||||| ||   |||||| ||||| |||||||||    
T  11809156 aggaatgtcaaagtaaagaagaaaataacttgtttatgacacttgtccgacacatgtcgtatgtgtgttattatagtgtcagacaccgcgacacgc 11809061  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 171 - 242
Target Start/End: Original strand, 26576401 - 26576472
Alignment:
Q  171 cgacacgtgtcgtatgtgtgtcatagcagtgtcggacactgcgacacgcttaatcctaaaggtgtctgtgct 242  Q
    |||||||||||||| | ||||||||| |||||||||||| ||||||||  || ||||| ||||||| |||||    
T  26576401 cgacacgtgtcgtacgggtgtcataggagtgtcggacaccgcgacacgtctagtcctagaggtgtccgtgct 26576472  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 199 - 242
Target Start/End: Original strand, 17651633 - 17651676
Alignment:
Q  199 gtgtcggacactgcgacacgcttaatcctaaaggtgtctgtgct 242  Q
    ||||||||||| ||||||||| |||||||||||||||| |||||    
T  17651633 gtgtcggacaccgcgacacgcctaatcctaaaggtgtccgtgct 17651676  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 181
Target Start/End: Original strand, 41849267 - 41849347
Alignment:
Q  102 tataggtgtcaaacaccggtccaaggagtgtcaaaataaagtagaaaacaactcattttgg-cacttgtccgacacgtgtc 181  Q
    ||||||||||  ||||| |||||||||||||| |||||||  |||||| |||| |||| || ||||||| ||| |||||||    
T  41849267 tataggtgtcggacaccagtccaaggagtgtcgaaataaaaaagaaaataacttatttaggacacttgttcgatacgtgtc 41849347  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 236
Target Start/End: Original strand, 54305958 - 54306023
Alignment:
Q  171 cgacacgtgtcgtatgtgtgtcatagcagtgtcggacactgcgacacgcttaatcctaaaggtgtc 236  Q
    |||||||||||||| | ||||||||| |||||||||||| | ||||||| || ||||| |||||||    
T  54305958 cgacacgtgtcgtacgggtgtcataggagtgtcggacaccgtgacacgcctagtcctagaggtgtc 54306023  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 242
Target Start/End: Complemental strand, 48632405 - 48632329
Alignment:
Q  166 ttgtccgacacgtgtcgtatgtgtgtcatagcagtgtcggacactgcgacacgcttaatcctaaaggtgtctgtgct 242  Q
    ||||||||| |||||| || | ||||||| | |||||||||||| ||||||||| || ||||| ||||||| |||||    
T  48632405 ttgtccgacgcgtgtcatacgagtgtcatgggagtgtcggacaccgcgacacgcctagtcctagaggtgtccgtgct 48632329  T

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