View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3306_low_35 (Length: 249)
Name: NF3306_low_35
Description: NF3306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3306_low_35 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 33946332 - 33946083
Alignment:
| Q |
1 |
cttctttagcagaatacatgccatcggaattaagatctcaaacacaggcatctt-ccacattatccttcaatgaaatattagacaacaaaaccttacggt |
99 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |
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| T |
33946332 |
cttctttagcagaatacatgccatcagaattaagatctcaaacacaggcatctttccacattatccttcaatgaaatattagacaacaaaaccttacagt |
33946233 |
T |
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| Q |
100 |
catccagcaacgcaacctcctacacaaacaaatgttttatccacctccaacaaccttccttaacatcaatgtctaacatcatatccctcaatgaaacgtt |
199 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33946232 |
catccaccaacgcaacctcctacacaaacaaatgttttatccacctccaacaacctcccttaacatcaatgtctaacatcatatccctcaatgaaacgtt |
33946133 |
T |
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| Q |
200 |
tttctttgcaaaattaaacgatctacgaaagcactcctttgctactcctc |
249 |
Q |
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||||||||||||||||||| ||||||||||||||||||| ||||| |||| |
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| T |
33946132 |
tttctttgcaaaattaaacaatctacgaaagcactccttagctacacctc |
33946083 |
T |
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