View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3306_low_42 (Length: 238)

Name: NF3306_low_42
Description: NF3306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3306_low_42
NF3306_low_42
[»] chr2 (2 HSPs)
chr2 (19-238)||(24147422-24147638)
chr2 (19-238)||(24152872-24153088)


Alignment Details
Target: chr2 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 24147638 - 24147422
Alignment:
Q  19 tatgtcatgtgatcataataa---gattcaattcctctcaatgatatataatttaaaaacttaaacatttcaaatcctaagaaaacaacataaagtatca 115  Q
    |||||||||||||||||||||   ||||||||||||||||||||||    |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  24147638 tatgtcatgtgatcataataataagattcaattcctctcaatgata----atttaaaaacttaaacttttcaaatcctaagaaaacaacataaagtatca 24147543  T
Q  116 gatatcttgaaatagcttggtgtataggcaaaggttgagaatgatatccctcaattacattagtcataagaatcttaatttatttataatgtgttcaacc 215  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24147542 gatatcttgaaatagcttggtgta--ggcaaaggttgagaatgatatccctcaattacattagtcataagaatcttaatttatttataatgtgttcaacc 24147445  T
Q  216 tttcaaatatttgatcagatcct 238  Q
    |||||||||||||||||||||||    
T  24147444 tttcaaatatttgatcagatcct 24147422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 24153088 - 24152872
Alignment:
Q  19 tatgtcatgtgatcataataa---gattcaattcctctcaatgatatataatttaaaaacttaaacatttcaaatcctaagaaaacaacataaagtatca 115  Q
    |||||||||||||||||||||   ||||||||||||||||||||||    |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  24153088 tatgtcatgtgatcataataataagattcaattcctctcaatgata----atttaaaaacttaaacttttcaaatcctaagaaaacaacataaagtatca 24152993  T
Q  116 gatatcttgaaatagcttggtgtataggcaaaggttgagaatgatatccctcaattacattagtcataagaatcttaatttatttataatgtgttcaacc 215  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24152992 gatatcttgaaatagcttggtgta--ggcaaaggttgagaatgatatccctcaattacattagtcataagaatcttaatttatttataatgtgttcaacc 24152895  T
Q  216 tttcaaatatttgatcagatcct 238  Q
    |||||||||||||||||||||||    
T  24152894 tttcaaatatttgatcagatcct 24152872  T

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