View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3306_low_48 (Length: 216)
Name: NF3306_low_48
Description: NF3306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3306_low_48 |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 52049746 - 52049943
Alignment:
| Q |
1 |
ttgtaacattaatcccttcctcattatttgataactagcggaaaaacggacaataacgtgtttgtctatatgtatttcttagttgtgctttgttttaaaa |
100 |
Q |
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| T |
52049746 |
ttgtaacattaatcccttcctcattatttgataactagcggaaaaacggacaataacgtgtttgtctatatgtatttcttagttgtgctttgttttaaaa |
52049845 |
T |
|
| Q |
101 |
aagtttgagatcctagctaaaaagataagagtatactcatactgtaaaatctaatgatatatgtccacgtatgagaaaattaatgacacaggtgtaca |
198 |
Q |
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| T |
52049846 |
aagtttgagatcctagctaaaaagataagagtatactcatactgtaaaatctaatgatatatgtccacgtatgagaaaattaatgacacaggtgtaca |
52049943 |
T |
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