View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3306_low_49 (Length: 202)
Name: NF3306_low_49
Description: NF3306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3306_low_49 |
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Alignment Details
Target: chr7 (Bit Score: 159; Significance: 7e-85; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 19 - 189
Target Start/End: Complemental strand, 45274954 - 45274784
Alignment:
| Q |
19 |
agtttggacagcgtacaaaaggtcaccgcggttgcccttgacattgtgactggtttgtccgacatcctccagcaattcaacttgaagtttgatatcaaac |
118 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45274954 |
agtttggacagcgtacaaaagatcaccgcggttgcccttgacattgtgactggtttgtccgacatcctccagcaattcaacttgaagtttgatatcaaac |
45274855 |
T |
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| Q |
119 |
ctctttcccgtcgtcttcttaattctgaggtgactgttgatgatcaaggacacccttcatggatctctgct |
189 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |
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| T |
45274854 |
ctctttcccgtcgtcttcttaattctgaggtgactgttgacgatcaaggatacccttcatggatctctgct |
45274784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 19 - 189
Target Start/End: Complemental strand, 45294583 - 45294413
Alignment:
| Q |
19 |
agtttggacagcgtacaaaaggtcaccgcggttgcccttgacattgtgactggtttgtccgacatcctccagcaattcaacttgaagtttgatatcaaac |
118 |
Q |
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||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45294583 |
agtttggacagcgtacaaaaggttaccgctgttgcccttgacattgtgactggtttgtccgacatcctccagcaattcaacttgaagtttgatatcaaac |
45294484 |
T |
|
| Q |
119 |
ctctttcccgtcgtcttcttaattctgaggtgactgttgatgatcaaggacacccttcatggatctctgct |
189 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
45294483 |
ctgcttcccgtcgtcttcttaattctgaggtgactgttgatgatcaaggatacccttcatggatctctgct |
45294413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 19 - 189
Target Start/End: Complemental strand, 45303543 - 45303373
Alignment:
| Q |
19 |
agtttggacagcgtacaaaaggtcaccgcggttgcccttgacattgtgactggtttgtccgacatcctccagcaattcaacttgaagtttgatatcaaac |
118 |
Q |
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|
||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45303543 |
agtttggacagcgtacaaaaggttaccgctgttgcccttgacattgtgactggtttgtccgacatcctccagcaattcaacttgaagtttgatatcaaac |
45303444 |
T |
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| Q |
119 |
ctctttcccgtcgtcttcttaattctgaggtgactgttgatgatcaaggacacccttcatggatctctgct |
189 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
45303443 |
ctgcttcccgtcgtcttcttaattctgaggtgactgttgatgatcaaggatacccttcatggatctctgct |
45303373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 19 - 186
Target Start/End: Complemental strand, 45283195 - 45283028
Alignment:
| Q |
19 |
agtttggacagcgtacaaaaggtcaccgcggttgcccttgacattgtgactggtttgtccgacatcctccagcaattcaacttgaagtttgatatcaaac |
118 |
Q |
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||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
45283195 |
agtttggacagcgtacaaaaggttaccgctgttgcccttgacattgtgactggtttgtccgacatcctccagcaattcaacttgaagtttgatgtcaaac |
45283096 |
T |
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| Q |
119 |
ctctttcccgtcgtcttcttaattctgaggtgactgttgatgatcaaggacacccttcatggatctct |
186 |
Q |
| |
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|| |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |
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| T |
45283095 |
ctgcttcccgtcgtcttcttaattctgaggtgactgttgacgatcaaggatacccttcatggatctct |
45283028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 19 - 186
Target Start/End: Complemental strand, 45271421 - 45271254
Alignment:
| Q |
19 |
agtttggacagcgtacaaaaggtcaccgcggttgcccttgacattgtgactggtttgtccgacatcctccagcaattcaacttgaagtttgatatcaaac |
118 |
Q |
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|||||| ||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |
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| T |
45271421 |
agtttgtacagcgtacaaaaggtcacagccgttgcccttgacattgtgactggtttgtctgacatcctccagcaattcaacttgaactttgatatcaaac |
45271322 |
T |
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| Q |
119 |
ctctttcccgtcgtcttcttaattctgaggtgactgttgatgatcaaggacacccttcatggatctct |
186 |
Q |
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||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |
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| T |
45271321 |
ctccttcccgtcgtcttcttaattctgaggtgactgttgacgatcaaggatacccttcatggatctct |
45271254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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