View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3307_high_1 (Length: 869)
Name: NF3307_high_1
Description: NF3307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3307_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 723; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 723; E-Value: 0
Query Start/End: Original strand, 9 - 852
Target Start/End: Original strand, 12161381 - 12162223
Alignment:
| Q |
9 |
gggtttcttgacattatcaattatttgattgacgtagataattaagtggttatataaattggtacttaaacaaattagtgttttggtgttatgcttttgt |
108 |
Q |
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| T |
12161381 |
gggtttcttgacattatcaattatttgattgacgtagataattaagtggttatataaattggtacttaaacaaattagtgttttggtgttatgcttttgt |
12161480 |
T |
|
| Q |
109 |
tacttagtgtgtgttgtttcagtaggtagaatataaaatcggtataattgatttgtctgagtgcactatagaataagtcaaaatacattatgggacggtt |
208 |
Q |
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| T |
12161481 |
tacttagtgtgtgttgtttcagtaggtagaatataaaatcggtataattgatttgtatgagtgcactatagaataagtcaaaatacattatgggacggtt |
12161580 |
T |
|
| Q |
209 |
cttgatcatttatggttggtctttattttgcctttttaattttatatgcaaaaagatagctccaagagaagnnnnnnnngagagtcgtaattattattat |
308 |
Q |
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| T |
12161581 |
cttgatcatttatggttggtctttattttgcctttttaattttatatgtaaaaagatagctccaagagaagaaaaaaaagagagtcgtaattattattat |
12161680 |
T |
|
| Q |
309 |
ttttatcaagagtgtcgtaattatttgatatagtaaaagagagtggtaattaatatacgcatgcatgaatagaaataacactttccataaaactatgcaa |
408 |
Q |
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| T |
12161681 |
ttttatcaagaatgtcgtaattatttgatatagtaaaagagagtggtaattaatatacgcatgcatgaatagaaataacacttcacataaaactatgcaa |
12161780 |
T |
|
| Q |
409 |
gaattctccaagtatgatcaataccatcatattacacacagcaataccatcaaaccataatttacttgaattagtatgtgtaatacatccatattaagag |
508 |
Q |
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| T |
12161781 |
gaattctccaagtatgatcaataccatcatattacacacagcaataccatcaaaccataatttatttgaattagtatgtgtaatacatccatattaagag |
12161880 |
T |
|
| Q |
509 |
ccactaaatcagagatgggtatcccacaccacctcgtggacattttagttcagattagnnnnnnncctttgctagtatgatcatggtgttatcaatatta |
608 |
Q |
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| T |
12161881 |
ccactaaatcagagatgggtatcccacaccacc-cgtggacattttagttcagattagtttttttcctttgctagtatgatcatggtgttatgaaaatta |
12161979 |
T |
|
| Q |
609 |
atgaaaactatgaaatggttcacttaaattaataaaaatttctcattttcttccaatttaaagtgtgaggaaactagggaagtttcttagattggttgga |
708 |
Q |
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| T |
12161980 |
atgaaaactatgaaatggttcacttgaattaataaaaatttctcattttcttccaatttaaagtgtgaggaaactagggaagtttcttatattggttgga |
12162079 |
T |
|
| Q |
709 |
atactatatgtttggataaggagttagggggtttcggggttatgagaattagggagtttaatatggtcctgttggataagtggtattggtgtatgttgca |
808 |
Q |
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|||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||||| |
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| T |
12162080 |
atactatatgtttggataaggagttagggggtttggaggttatgagaattagggagtttaatatggccatgttgggtaagtggtattggtgtatgttgca |
12162179 |
T |
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| Q |
809 |
tgagagggagggtttgtggcttaaggtgttggtggcgaggtatg |
852 |
Q |
| |
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|||| ||||||||||||||||||||||||||| ||||||||||| |
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| T |
12162180 |
tgagtgggagggtttgtggcttaaggtgttggcggcgaggtatg |
12162223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 717 - 770
Target Start/End: Original strand, 12807572 - 12807625
Alignment:
| Q |
717 |
tgtttggataaggagttagggggtttcggggttatgagaattagggagtttaat |
770 |
Q |
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| T |
12807572 |
tgtttggataaggaggttggtggtttaggggttatgagaattagggagtttaat |
12807625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 672 - 769
Target Start/End: Complemental strand, 9095805 - 9095708
Alignment:
| Q |
672 |
tgtgaggaaactagggaagtttcttagattggttggaatactatatgtttggataaggagttagggggtttcggggttatgagaattagggagtttaa |
769 |
Q |
| |
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|||||||| | |||| || |||||| |||| |||||||||||| ||||||||||| ||| | || ||||| |||| | |||||||||||| ||||| |
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| T |
9095805 |
tgtgaggataataggaaaatttcttggattcattggaatactatttgtttggataatgaggttggtggtttgagggtgaggagaattagggaatttaa |
9095708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 725 - 774
Target Start/End: Complemental strand, 32197908 - 32197859
Alignment:
| Q |
725 |
taaggagttagggggtttcggggttatgagaattagggagtttaatatgg |
774 |
Q |
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| T |
32197908 |
taaggaggttggcggtttgggggttaggagaattagggagtttaatatgg |
32197859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 717 - 770
Target Start/End: Complemental strand, 17836668 - 17836615
Alignment:
| Q |
717 |
tgtttggataaggagttagggggtttcggggttatgagaattagggagtttaat |
770 |
Q |
| |
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||||||||||||||||| |||||||| ||||||| ||| || ||||| |||||| |
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| T |
17836668 |
tgtttggataaggagtttgggggttttggggttaggaggatgagggaatttaat |
17836615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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