View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3307_high_2 (Length: 732)
Name: NF3307_high_2
Description: NF3307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3307_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 416; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 87 - 717
Target Start/End: Original strand, 39385141 - 39385769
Alignment:
| Q |
87 |
gaaggcttagccgtgtgctaatgattaatgcagtggaggtctctttcagggcagcacataaagaagacaggtgtaaatctgcttcagttgcaatagttgt |
186 |
Q |
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| T |
39385141 |
gaaggcttagccgtgtgctaatgattaatgcagtggaggtctctttcagggcagcacataaagaagacaggtgtaaatctgcttcagttgcaatagttgt |
39385240 |
T |
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| Q |
187 |
ggccagccatacaaaacaagagatgaatgatgttattaatttaattagtacgaatcaaatcaatagctataataaactaaaacaatacagagaatattct |
286 |
Q |
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| T |
39385241 |
ggccagccat-caaaacaagagaagaatgatgttattaatttaattagtacgaatcaaatcaatagctataataaactaaaacaatacagagaatattct |
39385339 |
T |
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| Q |
287 |
tggtcaaagggaacaaa--------------------caatgcagcaatgcttgcttggtgtcattatttatatcaacatcaagcaatagcagaacgggg |
366 |
Q |
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| T |
39385340 |
tggtcaaagggaacaaataaatttgtaactttgatgccaatgcagcaattcttgcttggtgtcattatttatatcaacatcaagcaatagcagaacggg- |
39385438 |
T |
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| Q |
367 |
tgtgtgtattacatatgaagaaatggttaagaagaggagagagtttatcaaagatggtcaattaaattagtggttacatacnnnnnnntactactaccat |
466 |
Q |
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| T |
39385439 |
---gtgtattacatatgaagaaatggtt---aagaggagagagtttatcaaagatggtcaattaaattagtggttacatacaaaaaagtactactaccat |
39385532 |
T |
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| Q |
467 |
caatcatttgcgaagacaataacatgaagtccaattagagaaaaatgtgaatgaaacaacatttatttaannnnnnnnnnnnatagacacacacgactaa |
566 |
Q |
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| T |
39385533 |
caatcatttgcgaagacaataacatgaagtccaattcgagaaaaatgtgaatgaaataacctttaagt--------gtgtgtatagacacacatgactaa |
39385624 |
T |
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| Q |
567 |
aaagcgtggcaattccattttatttgctggatttttattgcatcttttaaaatatgaagctattgtatcagttatattttaatatactctgtgtgtgtgg |
666 |
Q |
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| T |
39385625 |
aaagcgtggcaattccattttatttgctggatttttattgcatcttttaacatatgaagctattgtatcagttatattttaatatactctgtgt------ |
39385718 |
T |
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| Q |
667 |
gtgggtggttttattctttaactcaaaagtttcggattagatggtttatat |
717 |
Q |
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| T |
39385719 |
gtgggtggttatattctttaactcaaaagtttcggattagatggtttatat |
39385769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 32 - 81
Target Start/End: Original strand, 39384662 - 39384711
Alignment:
| Q |
32 |
atgaaaataaaattagtgctagtaatggggatattgcttaatatagaaaa |
81 |
Q |
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| T |
39384662 |
atgaaaataaaattagtgctagtaatggggacattgcttaatatataaaa |
39384711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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