View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3307_high_21 (Length: 301)
Name: NF3307_high_21
Description: NF3307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3307_high_21 |
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Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 9 - 209
Target Start/End: Complemental strand, 29935657 - 29935457
Alignment:
| Q |
9 |
agcagagagaggagagcaaaaaagatgccaacaacaacgccgtcgtttcgagttactggggtatcagtaggcctaaggttcttaaggaagatggaactga |
108 |
Q |
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| T |
29935657 |
agcagacagaggagagcaaaaaagatgccaaccacaacgccgtcgtttcgagttactggggtatcagtaggcctaaggttcttaaggaagatggaactga |
29935558 |
T |
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| Q |
109 |
gtggccatggaactgcttcatggtaagaatacatatatagaaagaggtattaactctaaattgatttagatatttgcaacttactaagctatttctttag |
208 |
Q |
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| T |
29935557 |
gtggccatggaactgcttcatggtaagaatacatatatagaaagaggtattaactctaaattgatttagatatttgcaacttactaagctatttctttag |
29935458 |
T |
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| Q |
209 |
c |
209 |
Q |
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| T |
29935457 |
c |
29935457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 43 - 139
Target Start/End: Complemental strand, 29932922 - 29932826
Alignment:
| Q |
43 |
caacgccgtcgtttcgagttactggggtatcagtaggcctaaggttcttaaggaagatggaactgagtggccatggaactgcttcatggtaagaata |
139 |
Q |
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| T |
29932922 |
caacaccgtcgtttcgagttactggggaatcactaggcccaaggttaaaagggaggatggaactgagtggccatggaactgtttcatggtaagaata |
29932826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 134
Target Start/End: Original strand, 37468588 - 37468624
Alignment:
| Q |
98 |
gatggaactgagtggccatggaactgcttcatggtaa |
134 |
Q |
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| T |
37468588 |
gatggaactgagtggccttggaactgcttcatggtaa |
37468624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 279
Target Start/End: Original strand, 51190839 - 51190892
Alignment:
| Q |
226 |
gttaaattatttttgtataagctacaaactattttgaagaacttataaaaataa |
279 |
Q |
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|||||||| |||||||||||| || || |||| ||||||||||||| ||||||| |
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| T |
51190839 |
gttaaattgtttttgtataagttataagctatcttgaagaacttatgaaaataa |
51190892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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