View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3307_high_22 (Length: 299)
Name: NF3307_high_22
Description: NF3307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3307_high_22 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 14 - 187
Target Start/End: Original strand, 52671823 - 52671996
Alignment:
| Q |
14 |
gaaatcaaagagagaaaaggaattgagaacagagcaagaaatggttacctgacatttgagatggaaataaatctataaaaggtattcctcttgaaaaaag |
113 |
Q |
| |
|
|||| |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52671823 |
gaaaccaaagagagaaaaggaattgagaaaagaacaagaaatggttacctgacatttgagatggaaataaatctataaaaggtattcctcttgaaaaaag |
52671922 |
T |
|
| Q |
114 |
tgatacgtatcggttaatatgcctaaaaaattgccaaaaagatgaaggaaggattgatgaatattcatattttc |
187 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52671923 |
tgatacgtatcggttaatatgcctaaaaaattgccaaaaagatgaaggaaggattgatgaatattcatattttc |
52671996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 214 - 284
Target Start/End: Original strand, 52672022 - 52672091
Alignment:
| Q |
214 |
tatgaatgaaatcgtacattcaataaaaactcatttagattccaatcttccacaaactactaccaaaaaat |
284 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52672022 |
tatgaatgaaatcgtacattcaataaaa-ctcatttagattccaatcttccacaaactactaccaaaaaat |
52672091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University