View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3307_high_25 (Length: 276)
Name: NF3307_high_25
Description: NF3307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3307_high_25 |
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Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 10133080 - 10133339
Alignment:
| Q |
1 |
aaaaacaggaacatatgtatgatgataaagtatataccatgagagtgataaacgagtaagagcaaaagaaatggaatctctccaaccatgacaaacatga |
100 |
Q |
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| T |
10133080 |
aaaaacaggaacatatgtatgatgataaagtatataccatgagagtgataaacgagtgagagcaaaagaaatggaatctctccaaccatgacaaacatga |
10133179 |
T |
|
| Q |
101 |
gaagccgtaatcaccatttgatcatccaaaagtgacaaaatttgcatcaaaagttcaactggaatatccttccactctctcactgtcatcatcatcttca |
200 |
Q |
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| T |
10133180 |
gaagctgtaatcaccatttgatcatccaaaagtgacaaaatttgcatcaaaagttcaactggaatatccttccactctctcactgtcatcatcatcttca |
10133279 |
T |
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| Q |
201 |
cttctttcacaaaattttcactaccgccacagctagtagtagtaatcatcatatgcttct |
260 |
Q |
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| T |
10133280 |
cttctttcacaaaattttcactaccgccacagctagtagtagtaatcatcataagcttct |
10133339 |
T |
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Back To:
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Target: chr3 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 31 - 174
Target Start/End: Complemental strand, 40693557 - 40693414
Alignment:
| Q |
31 |
tatataccatgagagtgataaacgagtaagagcaaaagaaatggaatctctccaaccatgacaaacatgagaagccgtaatcaccatttgatcatccaaa |
130 |
Q |
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||||||||| |||||||||||||||| ||| |||| |||| ||||||||||||||| |||||||| |||| | |||||| | |||||||||| | |
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| T |
40693557 |
tatataccaagagagtgataaacgagcaaggccaaagtaaatagaatctctccaaccacgacaaacaccagaaactcgaatcacagtctgatcatccaca |
40693458 |
T |
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| Q |
131 |
agtgacaaaatttgcatcaaaagttcaactggaatatccttcca |
174 |
Q |
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| T |
40693457 |
agagacagaatctgcatcaaaagctcaacaggaatatccttcca |
40693414 |
T |
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