View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3307_high_29 (Length: 270)
Name: NF3307_high_29
Description: NF3307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3307_high_29 |
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Alignment Details
Target: chr2 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 4973160 - 4973412
Alignment:
| Q |
1 |
tgaggatttcagcaatattgttaccaatgttgaagcatgcactatatacaaaggaacactgtctagtggagtcgagattgcagttgtttctggtctgatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4973160 |
tgaggatttcagcaatattgttaccaatgttgaagcatgcactatatacaaaggaacactgtctagtggagtcgagattgcagttgtttctggtctgatt |
4973259 |
T |
|
| Q |
101 |
aatactagacaggaatggactaagaccatggaattgaactacaggagaaaggttttcctattgtcctcttaaattcaatagaaagaagatgattgcattt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4973260 |
aatactagacaggaatggactaagaccatggaattgaactacaggagaaaggttttcctattgtcctcttaaattcaatagaaagaagatgattgcattt |
4973359 |
T |
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| Q |
201 |
aacaatcccaaacttctcttttgctaatctagtttcgtgtatgctacagattg |
253 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4973360 |
aacaatcccaaacttctcttttgctaatctagtttcgtgtatgctacagattg |
4973412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 4991068 - 4991320
Alignment:
| Q |
1 |
tgaggatttcagcaatattgttaccaatgttgaagcatgcactatatacaaaggaacactgtctagtggagtcgagattgcagttgtttctggtctgatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4991068 |
tgaggatttcagcaatattgttaccaatgttgaagcatgcactatatacaaaggaacactgtctagtggagtcgagattgcagttgtttctggtctgatt |
4991167 |
T |
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| Q |
101 |
aatactagacaggaatggactaagaccatggaattgaactacaggagaaaggttttcctattgtcctcttaaattcaatagaaagaagatgattgcattt |
200 |
Q |
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| T |
4991168 |
aatactagacaggaatggactaagaccatggaattgaactacaggagaaaggttttcctattgtcctcttaaattcaatagaaagaagatgattgcattt |
4991267 |
T |
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| Q |
201 |
aacaatcccaaacttctcttttgctaatctagtttcgtgtatgctacagattg |
253 |
Q |
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| T |
4991268 |
aacaatcccaaacttctcttttgctaatctagtttcgtgtatgctacagattg |
4991320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 91
Target Start/End: Complemental strand, 35832537 - 35832451
Alignment:
| Q |
5 |
gatttcagcaatattgttaccaatgttgaagcatgcactatatacaaaggaacactgtctagtggagtcgagattgcagttgtttct |
91 |
Q |
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|||||||||||||| ||| || | ||||| |||||| ||||| |||||||||||||| |||||||| |||||||| |||| |||| |
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| T |
35832537 |
gatttcagcaatatcattaacagttttgaaaaatgcaccatatataaaggaacactgtccagtggagttgagattgctgttgattct |
35832451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 72
Target Start/End: Original strand, 41619836 - 41619878
Alignment:
| Q |
30 |
ttgaagcatgcactatatacaaaggaacactgtctagtggagt |
72 |
Q |
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||||||||||||| |||||||||||||||||||| |||||||| |
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| T |
41619836 |
ttgaagcatgcaccatatacaaaggaacactgtccagtggagt |
41619878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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