View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3307_high_3 (Length: 615)
Name: NF3307_high_3
Description: NF3307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3307_high_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 569; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 569; E-Value: 0
Query Start/End: Original strand, 7 - 599
Target Start/End: Complemental strand, 11697528 - 11696936
Alignment:
| Q |
7 |
cgagcagaacctgtgatgtatctggtatgtacccttcaaatttcaactgccattccatttggtgaatcatctcatagattatgttccattgaggtataga |
106 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11697528 |
cgagcaaaacttgtgatgtatctggtatgtacccttcaaatttcaactgccattccatttggtgaatcatctcatagattatgttccattgaggtataga |
11697429 |
T |
|
| Q |
107 |
cttgtcttgtgaaacaaacttgtacactttcctctttgcttcaattaaactaaacccgggtgtttgtaccaagtttctttcggctaattttgttctgatc |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11697428 |
cttgtcttgtgaaacaaacttgtacactttcctctttgcttcaattaaactaaacccgggtgtttgtaccaagtttctttcggctaattttgttctgatc |
11697329 |
T |
|
| Q |
207 |
ttggctacgtcgtcccacttttgtgcctttgcgtacatattagcaagcaccaaataatcgcctgagttgttttgattcaacatgaaaagattctcggctg |
306 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11697328 |
ttggctacatcgtcccacttttgtgcctttgcgtacatattagcaagcaccaaataatcgcctgagttgttttgattcaacatgaaaagattctcggctg |
11697229 |
T |
|
| Q |
307 |
caatctcgccaatttctaagttatgatgaactttacaagcacttaaaaggctcctccaaattacatcattaggcttgattgacatgctctttatgagttc |
406 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11697228 |
caatcttgccaatttctaagttatgatgaactttacaagcacttaaaaggctcctccaaattacatcattaggcttgattgacatgctctttatgagttc |
11697129 |
T |
|
| Q |
407 |
ataggcttcctttagcatcccaaatcttcccaacagatccaccatgcaaccataatgctgaactgttggttcaatcgtatgctcaaattgcatgcttttg |
506 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |
|
|
| T |
11697128 |
ataggcttcctttagcatcccaaatcttcccaacagatccaccatgcaaccataatgctgaaccgttggttcaatcttatgctcaaattgcatgcttttg |
11697029 |
T |
|
| Q |
507 |
aaacattgtagaccctcctcgacaagaccagcatgactgcaagcactaaatacgccaacatagacaacatcatctggtgccaaaccttcttca |
599 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11697028 |
aaacattgtagaccctcctcgacaagaccagcatgactgcaagcactaaatacgccaacatagacaacatcatctggtgccaaaccttcttca |
11696936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University