View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3307_high_33 (Length: 237)
Name: NF3307_high_33
Description: NF3307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3307_high_33 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 18 - 237
Target Start/End: Original strand, 54852364 - 54852583
Alignment:
| Q |
18 |
ggtatttgatctttgaggttcgaaattttgagttgcagctggggagcattgggagtttttgtcgagtattggctcatatcttagattattttgtggtatt |
117 |
Q |
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| T |
54852364 |
ggtatttgatctttgaggttcgaaattttgagttgcagctggggagcattgggagtttttgtcgagtattggctcatatcttagattattttgtggtatt |
54852463 |
T |
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| Q |
118 |
ttttggaagtgccattccttcgtatcttggtcaggccaaatttcatatctttgggcagcttgagaggaagtataggactgagaatttatttcaaaagtgt |
217 |
Q |
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| T |
54852464 |
ttttggaagtgccattccttcgtatcttagtcaggccaaatttcatatctttgggcagcttgagaggaagtataggactgagaatttatttcaaaagtgt |
54852563 |
T |
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| Q |
218 |
ggagcaatatacattcaagt |
237 |
Q |
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| T |
54852564 |
ggagcaatatacattcaagt |
54852583 |
T |
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