View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3307_high_34 (Length: 236)
Name: NF3307_high_34
Description: NF3307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3307_high_34 |
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| [»] scaffold0472 (1 HSPs) |
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Alignment Details
Target: scaffold0472 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: scaffold0472
Description:
Target: scaffold0472; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 2665 - 2444
Alignment:
| Q |
1 |
aaggagtttattataagactaaccactgtaaaaggggg-ctcactaaccaggtatgatcacttcacatcattccaattttatcactcatttacttatata |
99 |
Q |
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|||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2665 |
aaggagcttattataagactaaccactgtaaaaggggggctcactaaccaggtatgatcacttcacatcattccaattttatcactcatttacttatata |
2566 |
T |
|
| Q |
100 |
tcgagtgtgtcaactatttgctagcacctcgtctgactcaagcgttgcaatattttctgtagtcgtccctacactttgaagaaaagcataaagaggaact |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
2565 |
tcgagtgtgtcaactatttgctagcacctcgtctgactcaagcgttgcaatattttctatagtcgtccctacactttgaagaaaagcataaagaggaaca |
2466 |
T |
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| Q |
200 |
tatgaccaatcatagagtattc |
221 |
Q |
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|||||||||||||||||||||| |
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| T |
2465 |
tatgaccaatcatagagtattc |
2444 |
T |
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