View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3307_low_10 (Length: 490)
Name: NF3307_low_10
Description: NF3307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3307_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 1 - 473
Target Start/End: Complemental strand, 179865 - 179401
Alignment:
| Q |
1 |
caagaaaatctgataccatataagagtttgaatataagagattgaatggcaattgtattcaattatgtattg-tgatacatgtatttaagtacaacgata |
99 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||| ||||||||||||||||||||||||||| |
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| T |
179865 |
caagaaaatctgataccatataagagtttgaatataagag-ttg--------ttgtattgaattatgtattgctgatacatgtatttaagtacaacgata |
179775 |
T |
|
| Q |
100 |
tgcctcgacattaagagataactacctagcttattttatggtaacaactttatctacaaacaaacagctgtgcaattcaaatttgaaataataactagag |
199 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |
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| T |
179774 |
tgccttagcattaagagataactacctagcttattttatggtaacaactttatctacaaacaaacagctatgcaattcaaatttgaaataataacaagag |
179675 |
T |
|
| Q |
200 |
atatgtattgagtgtatgacagatcactatccttaacattaagattattttgttggtctaacagtaaaaatggaataaactattttagagaagacatata |
299 |
Q |
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|||||||||||| |||||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
179674 |
atatgtattgagcgtatgacagatcactatccttaacgttaggattattttgttggtgtaacagtaaaaatggaataaactattttagagaagacatata |
179575 |
T |
|
| Q |
300 |
attgagattctaaactatttttgttaggttataacatgattaatgaaacatataattgcattgagttgttgaagtaagcaatcaccctagaccttcttga |
399 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
179574 |
actgagattctaaactatttttgttaggttataacatgattaatgaaacatataattgcattgagtttttgaagtaagcaatcaccctagaccttcttga |
179475 |
T |
|
| Q |
400 |
tgattgcttttgacatatactaaatttaagactatattctaaaatatctttagtagtacggcttacatgatttt |
473 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |
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|
| T |
179474 |
tgattgcttttgacatatactaaatttaagactatattctaaaatatctttagtagcacgggttacatgatttt |
179401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 135; Significance: 4e-70; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 32 - 254
Target Start/End: Complemental strand, 1700235 - 1700025
Alignment:
| Q |
32 |
atataagagattgaatggcaattgtattcaattatgtattg-tgatacatgtatttaagtacaacgatatgcctcgacattaagagataactacctagct |
130 |
Q |
| |
|
||||||||| ||||||||||||||| || |||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |
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|
| T |
1700235 |
atataagagtttgaatggcaattgtttttaattatgtattgctgatacatgtatttaagtacaacgatatgccttggcattaagagataactacctagct |
1700136 |
T |
|
| Q |
131 |
tattttatggtaacaactttatctacaaacaaacagctgtgcaattcaaatttgaaataataactagagatatgtattgagtgtatgacagatcactatc |
230 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |
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| T |
1700135 |
tattttatggtaacagctttatctaca----aacagctgtgcaattcaaatttgaaataataacaagagata---------tgtatgacagatcactatc |
1700049 |
T |
|
| Q |
231 |
cttaacattaagattattttgttg |
254 |
Q |
| |
|
|||||||||| ||||||||||||| |
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|
| T |
1700048 |
cttaacattaggattattttgttg |
1700025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 33 - 254
Target Start/End: Complemental strand, 1704652 - 1704443
Alignment:
| Q |
33 |
tataagagattgaatggcaattgtattcaattatgtattg-tgatacatgtatttaagtacaacgatatgcctcgacattaagagataactacctagctt |
131 |
Q |
| |
|
|||||||| ||||||||||||||| || |||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |
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|
| T |
1704652 |
tataagagtttgaatggcaattgtttttaattatgtattgctgatacatgtatttaagtacaacgatatgccttggcattaagagataactacctagctt |
1704553 |
T |
|
| Q |
132 |
attttatggtaacaactttatctacaaacaaacagctgtgcaattcaaatttgaaataataactagagatatgtattgagtgtatgacagatcactatcc |
231 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |
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|
| T |
1704552 |
attttatggtaacagctttatctaca----aacagctgtgcaattcaaatttgaaataataacaagagata---------tgtatgacagatcactatcc |
1704466 |
T |
|
| Q |
232 |
ttaacattaagattattttgttg |
254 |
Q |
| |
|
||||||||| ||||||||||||| |
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|
| T |
1704465 |
ttaacattaggattattttgttg |
1704443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 33 - 254
Target Start/End: Original strand, 20613285 - 20613493
Alignment:
| Q |
33 |
tataagagattgaatggcaattgtattcaattatgtattg-tgatacatgtatttaagtacaacgatatgcctcgacattaagagataactacctagctt |
131 |
Q |
| |
|
|||||||| ||||||||||||||| || | |||||||||| |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |
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|
| T |
20613285 |
tataagagtttgaatggcaattgttttta-ttatgtattgctgatacatgtatttaagtacaacgatatgccttggcattaagagataactacctagctt |
20613383 |
T |
|
| Q |
132 |
attttatggtaacaactttatctacaaacaaacagctgtgcaattcaaatttgaaataataactagagatatgtattgagtgtatgacagatcactatcc |
231 |
Q |
| |
|
||| |||||||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |
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|
| T |
20613384 |
attatatggtaacagctttatct----acaaacagctgtgcaattcaaatttgaaataataacaagagata---------tgtatgacagatcactatcc |
20613470 |
T |
|
| Q |
232 |
ttaacattaagattattttgttg |
254 |
Q |
| |
|
||||||||| ||||||||||||| |
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|
| T |
20613471 |
ttaacattaggattattttgttg |
20613493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 216 - 266
Target Start/End: Original strand, 20625212 - 20625262
Alignment:
| Q |
216 |
tgacagatcactatccttaacattaagattattttgttggtctaacagtaa |
266 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
20625212 |
tgacagatcactatccttaacattaggattattttgttggtctaacagtaa |
20625262 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 1700252 - 1700220
Alignment:
| Q |
1 |
caagaaaatctgataccatataagagtttgaat |
33 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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|
| T |
1700252 |
caagaaaatctgataccatataagagtttgaat |
1700220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 131; Significance: 9e-68; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 33 - 262
Target Start/End: Original strand, 35919911 - 35920125
Alignment:
| Q |
33 |
tataagagattgaatggcaattgtattcaattatgtattg-tgatacatgtatttaagtacaacgatatgcctcgacattaagagataactacctagctt |
131 |
Q |
| |
|
|||||||| ||||||||||||||| || |||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |
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|
| T |
35919911 |
tataagagtttgaatggcaattgtttt-aattatgtattgctgatacatgtatttaagtacaacgatatgccttggcattaagagataactacctagctt |
35920009 |
T |
|
| Q |
132 |
attttatggtaacaactttatctacaaacaaacagctgtgcaattcaaatttgaaataataactagagatatgtattgagtgtatgacagatcactatcc |
231 |
Q |
| |
|
||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |
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|
| T |
35920010 |
attctatggtaacaactttatct----acaaacagctgtgcaattcaaatttgaaataataac--gagata---------tgtatgacagatcactatcc |
35920094 |
T |
|
| Q |
232 |
ttaacattaagattattttgttggtctaaca |
262 |
Q |
| |
|
||||||||| ||||||||||||||||||||| |
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|
| T |
35920095 |
ttaacattaggattattttgttggtctaaca |
35920125 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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