View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3307_low_11 (Length: 489)
Name: NF3307_low_11
Description: NF3307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3307_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 1 - 471
Target Start/End: Original strand, 23886399 - 23886869
Alignment:
| Q |
1 |
attaattaaacgacgatattataataagccttggaaaatccgnnnnnnnnnngtagataaattagaatataatcaaaagttccgtcaaaaacaaaaatca |
100 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
23886399 |
attaattaaacgacgatattctaataagccttggaaaatccgaaaaaaaaaagtagataaattagaatatagtcaaaagttccgtcaaaaacaaaaatca |
23886498 |
T |
|
| Q |
101 |
attctcttctaataagtagatcttgtttcttagtagtatcatcacacaaaacacattcacaactcctcgcaacaatgttgttcttcttacaagacccgtt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23886499 |
attctcttctaataagtagatcttgttttttagtagtatcatcacacaatacacattcacaactcctcgcaacaatgttgttcttcttacaagacccgtc |
23886598 |
T |
|
| Q |
201 |
actcttcagctactccctccacacacttttcctcatagcaccaccaaccttcatctctctcacattcctccaagctccatacggtaaacaccatagacca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23886599 |
actcttcagctactccctccacacacttttcctcatagcaccaccaaccttcatctctctcacattcctccaagctccatacggtaaacaccatagacca |
23886698 |
T |
|
| Q |
301 |
ggttggggtccaaatctctctccacctcttgcatggtttctcatggaaagtcctactctttggttcaccctttatcttttcccacacggtagcaactcct |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
23886699 |
ggttggggtccaaatctctctccacctcttgcatggtttctcatggaaagtcctactctctggttcaccctttatcttttcccacacggtagcaactcct |
23886798 |
T |
|
| Q |
401 |
caaatccaaaatcaataatcctcataaccccttttcttgttcattacttcaaccgcacaataatctaccct |
471 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23886799 |
caaatccaaaatcaataatcctcataaccccttttcttgttcattacttcaaccgcacaataatctaccct |
23886869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 170 - 471
Target Start/End: Complemental strand, 24346357 - 24346056
Alignment:
| Q |
170 |
caacaatgttgttcttcttacaagacccgttactcttcagctactccctccacacacttttcctcatagcaccaccaaccttcatctctctcacattcct |
269 |
Q |
| |
|
|||||||||||||||||||||||||| | | |||||||| |||||| ||| ||| || ||||||||||||||||||||||||||||||||||||||||| |
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| T |
24346357 |
caacaatgttgttcttcttacaagactcatcactcttcaactactctctcttcactctcttcctcatagcaccaccaaccttcatctctctcacattcct |
24346258 |
T |
|
| Q |
270 |
ccaagctccatacggtaaacaccatagaccaggttggggtccaaatctctctccacctcttgcatggtttctcatggaaagtcctactctttggttcacc |
369 |
Q |
| |
|
||||||||||||||||||| || || |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| || || ||||| ||| |
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|
| T |
24346257 |
ccaagctccatacggtaaatactatcgacctggttggggtccaaatctctctccacctcttgcatggttcctcatggaaagtccaacactctggtttacc |
24346158 |
T |
|
| Q |
370 |
ctttatcttttcccacacggtagcaactcctcaaatccaaaatcaataatcctcataaccccttttcttgttcattacttcaaccgcacaataatctacc |
469 |
Q |
| |
|
|||||||| || |||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
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|
| T |
24346157 |
ctttatctctttccacacggtaaaaactcctcgaacccaaaatcaataatcctcataaccccttttcttgttcattacttcaaccgcactgtcatctacc |
24346058 |
T |
|
| Q |
470 |
ct |
471 |
Q |
| |
|
|| |
|
|
| T |
24346057 |
ct |
24346056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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