View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3307_low_12 (Length: 411)

Name: NF3307_low_12
Description: NF3307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3307_low_12
NF3307_low_12
[»] scaffold0472 (1 HSPs)
scaffold0472 (1-73)||(2801-2873)
[»] chr4 (2 HSPs)
chr4 (134-211)||(46227476-46227553)
chr4 (101-141)||(11913853-11913892)
[»] chr7 (2 HSPs)
chr7 (151-211)||(14706610-14706670)
chr7 (99-141)||(2433163-2433204)
[»] chr6 (2 HSPs)
chr6 (99-141)||(12877142-12877184)
chr6 (101-141)||(15953161-15953201)
[»] chr2 (2 HSPs)
chr2 (151-211)||(3506914-3506974)
chr2 (101-141)||(36050416-36050457)
[»] chr1 (2 HSPs)
chr1 (103-141)||(147000-147038)
chr1 (101-141)||(39197507-39197547)
[»] chr5 (1 HSPs)
chr5 (136-177)||(8796058-8796099)


Alignment Details
Target: scaffold0472 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 2801 - 2873
Alignment:
Q  1 atttttatctgtgtgtaatggaacccgacttggtagctatctagatgttggttatgctttgagtcgaggagac 73  Q
    |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  2801 atttttatttgagtgtaatggaacccgacttggtagctatctagatgttggttatgctttgagtcgatgagac 2873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 134 - 211
Target Start/End: Original strand, 46227476 - 46227553
Alignment:
Q  134 aataataactaggacgccgacccgtgctatcgcacgggacaataatgggcacataacaatatcaatggaggaataata 211  Q
    ||||||||||||   | |||||||||||||||||||||||| |||||| |||||  || || ||||||||||||||||    
T  46227476 aataataactagacggtcgacccgtgctatcgcacgggacagtaatggacacatttcattagcaatggaggaataata 46227553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 101 - 141
Target Start/End: Original strand, 11913853 - 11913892
Alignment:
Q  101 tgttgtaaaattaggcataaaattatctctataaataataa 141  Q
    |||||||||||||| |||||| |||||||||||||||||||    
T  11913853 tgttgtaaaattagacataaa-ttatctctataaataataa 11913892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 151 - 211
Target Start/End: Complemental strand, 14706670 - 14706610
Alignment:
Q  151 cgacccgtgctatcgcacgggacaataatgggcacataacaatatcaatggaggaataata 211  Q
    |||||||||||||||||||||||| |||||| |||||  || || ||||||||||||||||    
T  14706670 cgacccgtgctatcgcacgggacagtaatggacacatttcattagcaatggaggaataata 14706610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 99 - 141
Target Start/End: Complemental strand, 2433204 - 2433163
Alignment:
Q  99 attgttgtaaaattaggcataaaattatctctataaataataa 141  Q
    |||||||||||||||||||| |||||||||||| |||||||||    
T  2433204 attgttgtaaaattaggcat-aaattatctctaaaaataataa 2433163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 99 - 141
Target Start/End: Original strand, 12877142 - 12877184
Alignment:
Q  99 attgttgtaaaattaggcataaaattatctctataaataataa 141  Q
    |||||||||| ||||||||||| ||||||||||||||||||||    
T  12877142 attgttgtaagattaggcataagattatctctataaataataa 12877184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 101 - 141
Target Start/End: Complemental strand, 15953201 - 15953161
Alignment:
Q  101 tgttgtaaaattaggcataaaattatctctataaataataa 141  Q
    |||||||||||||| ||||| |||||||| |||||||||||    
T  15953201 tgttgtaaaattagacataagattatctcaataaataataa 15953161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 211
Target Start/End: Complemental strand, 3506974 - 3506914
Alignment:
Q  151 cgacccgtgctatcgcacgggacaataatgggcacataacaatatcaatggaggaataata 211  Q
    |||||||||||||||||||||||| |||||| |||||  || |  ||||||||||||||||    
T  3506974 cgacccgtgctatcgcacgggacagtaatggacacatttcatttgcaatggaggaataata 3506914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 141
Target Start/End: Complemental strand, 36050457 - 36050416
Alignment:
Q  101 tgttgtaaaatt-aggcataaaattatctctataaataataa 141  Q
    |||||||||||| ||||||| |||||||||||||||||||||    
T  36050457 tgttgtaaaatttaggcatacaattatctctataaataataa 36050416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 103 - 141
Target Start/End: Original strand, 147000 - 147038
Alignment:
Q  103 ttgtaaaattaggcataaaattatctctataaataataa 141  Q
    ||||||||||| |||||| ||||||||||||||||||||    
T  147000 ttgtaaaattaagcataagattatctctataaataataa 147038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 101 - 141
Target Start/End: Complemental strand, 39197547 - 39197507
Alignment:
Q  101 tgttgtaaaattaggcataaaattatctctataaataataa 141  Q
    |||||||| ||||||||||||||||| ||| ||||||||||    
T  39197547 tgttgtaatattaggcataaaattatttctgtaaataataa 39197507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 177
Target Start/End: Complemental strand, 8796099 - 8796058
Alignment:
Q  136 taataactaggacgccgacccgtgctatcgcacgggacaata 177  Q
    ||||||||||  |||||||||||||||||||||||| |||||    
T  8796099 taataactagatcgccgacccgtgctatcgcacgggtcaata 8796058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University