View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3307_low_13 (Length: 387)
Name: NF3307_low_13
Description: NF3307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3307_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 92; Significance: 1e-44; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 56 - 179
Target Start/End: Original strand, 167262 - 167384
Alignment:
| Q |
56 |
atcaagtgattaatgactaaatattcaccacactgagattaataagtggagaatgaattcgagattgcacatacaaattatttgtaatgtctctaccaat |
155 |
Q |
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| T |
167262 |
atcaagtgattaatgactaaatattcaccgcaca-aggttaataagtggagaatgaattcgagattgcacatacaaattatttgtaatgtctctatcaat |
167360 |
T |
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| Q |
156 |
caagttatgttcactaagacaatg |
179 |
Q |
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| T |
167361 |
cgagttatgttcactaggacaatg |
167384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 295 - 378
Target Start/End: Original strand, 167481 - 167564
Alignment:
| Q |
295 |
atgacattttatgcgtcactgaatggataatattcttcataatataacnnnnnnnnttatgctattactttttccaccctatgc |
378 |
Q |
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| T |
167481 |
atgacattttatggaccactgaatggataatattcttcataatataacaaaaaaaattatgctattactttttccaccctatgc |
167564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 2306692 - 2306647
Alignment:
| Q |
1 |
taattcgtatttcccgtagattcagtttcgtgggaaatggcatttc |
46 |
Q |
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| T |
2306692 |
taattcgtattttccgtggattcagtttcgtgggaaatggcatttc |
2306647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 13332787 - 13332834
Alignment:
| Q |
1 |
taattcgtatttcccgtagattcagtttcgtgggaaatggcatttccc |
48 |
Q |
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| T |
13332787 |
taattcgtattttccgtggattcagtttcgtgggaaatggcatttccc |
13332834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 21538222 - 21538269
Alignment:
| Q |
1 |
taattcgtatttcccgtagattcagtttcgtgggaaatggcatttccc |
48 |
Q |
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| T |
21538222 |
taattcgtattttccgtggattcagtttcgtgggaaatggtatttccc |
21538269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 35840827 - 35840875
Alignment:
| Q |
1 |
taattcgtatttcccgtagattcagtttcgtgggaaat-ggcatttccc |
48 |
Q |
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| T |
35840827 |
taattcgtattttccgtggattcagtttcgtgggaaatgggcatttccc |
35840875 |
T |
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