View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3307_low_15 (Length: 379)
Name: NF3307_low_15
Description: NF3307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3307_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 1 - 364
Target Start/End: Original strand, 41022014 - 41022377
Alignment:
| Q |
1 |
atgtagctagaaataaaacaagacattctatttctatcttccatggaacctaagttcaatgcaatgtatcacttctatgatatattcatctcagacacga |
100 |
Q |
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| T |
41022014 |
atgtagctagaaataaaacaagacattctatttctatcttccatggaacctaagttcaatgcaatgtatcacttctatgatatattcatctcagacacga |
41022113 |
T |
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| Q |
101 |
tttccaaaaccagtgtttccaaaacatttttctccacctccattgcaatttcttctgcatcattatggatattcatccatgattcgcgtctggccaagtc |
200 |
Q |
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| T |
41022114 |
tttccaaaaccagtgtttccaaaacatttttctccacctccattgcaatttcttctgcatcattatggatattcatccatgattcgcgtctggccaagtc |
41022213 |
T |
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| Q |
201 |
cctttcaacaagctgttgtaatgttattggtgatggatgatggaaaaagtgaaggttaacaagttcattaatctgtctaaccaaaactttcttcacaaca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41022214 |
cctttcaacaagctgttgtaatgttattggtgatggatgatggaaaaagtgaaggttaacaagttcattaatctgtctaaccaaaactttcttcacaaca |
41022313 |
T |
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| Q |
301 |
catgcttggaagtttgaatttcttgatgaaaaatggggcgaaaaaccactattctggtataact |
364 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41022314 |
catgcttggaagtttgaatttcttgatgaaaaatggggcgaaaaaccactattctggtataact |
41022377 |
T |
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