View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3307_low_17 (Length: 367)
Name: NF3307_low_17
Description: NF3307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3307_low_17 |
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Alignment Details
Target: chr6 (Bit Score: 86; Significance: 5e-41; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 106 - 250
Target Start/End: Original strand, 1341395 - 1341537
Alignment:
| Q |
106 |
ctctatagatttaacttcaattcacactagagaggggaagtattttgaagtcttatcacactttaaagagttagagagtccccattggaggagactcgtc |
205 |
Q |
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| T |
1341395 |
ctctataaatttaacttcaattcacacaagagagggggagtattttaaagtcttatcac--ttcaaagagttagagactccacattggaggagagtcatc |
1341492 |
T |
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| Q |
206 |
aatttctatctctcgttttattttttgctacttatctgctcaatg |
250 |
Q |
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| T |
1341493 |
aatctctatctctcgttttattttttgctccttatctgcccaatg |
1341537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 289 - 352
Target Start/End: Original strand, 1341543 - 1341605
Alignment:
| Q |
289 |
ttgtacagtccattaggcttggtttacttttttaatcaaaagaaaatttgtccatattttcctt |
352 |
Q |
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| T |
1341543 |
ttgtacagtccattaagcatggcttactttt-taatcaaaagaaaatttgtccatattttcctt |
1341605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 106 - 179
Target Start/End: Original strand, 1333262 - 1333335
Alignment:
| Q |
106 |
ctctatagatttaacttcaattcacactagagaggggaagtattttgaagtcttatcacactttaaagagttag |
179 |
Q |
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| T |
1333262 |
ctctataaatttgacttctattcacacaagagagggggagtattttgaagtcttatcaccattcaaagagttag |
1333335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 314 - 354
Target Start/End: Original strand, 1333462 - 1333502
Alignment:
| Q |
314 |
acttttttaatcaaaagaaaatttgtccatattttcctttc |
354 |
Q |
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| T |
1333462 |
acttttttaatcaaaagaaaatttgtccatgttttcctttc |
1333502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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