View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3307_low_18 (Length: 362)

Name: NF3307_low_18
Description: NF3307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3307_low_18
NF3307_low_18
[»] chr1 (37 HSPs)
chr1 (69-352)||(19464044-19464327)
chr1 (1-76)||(5800327-5800402)
chr1 (1-72)||(35428533-35428604)
chr1 (1-80)||(30222921-30223000)
chr1 (1-79)||(40987954-40988032)
chr1 (1-62)||(35050208-35050269)
chr1 (1-73)||(16129850-16129922)
chr1 (1-73)||(27654833-27654905)
chr1 (1-72)||(34546878-34546949)
chr1 (1-73)||(16130404-16130476)
chr1 (1-73)||(45192466-45192537)
chr1 (250-352)||(33747279-33747381)
chr1 (261-324)||(16192266-16192329)
chr1 (250-351)||(30519047-30519149)
chr1 (1-78)||(9412285-9412362)
chr1 (1-74)||(27846565-27846638)
chr1 (247-352)||(45679511-45679616)
chr1 (277-349)||(34826834-34826905)
chr1 (1-81)||(35121376-35121455)
chr1 (261-324)||(30050321-30050384)
chr1 (272-315)||(39162637-39162680)
chr1 (1-74)||(4813644-4813715)
chr1 (274-352)||(8778986-8779064)
chr1 (1-47)||(23933236-23933282)
chr1 (236-349)||(6727993-6728106)
chr1 (239-352)||(32743324-32743437)
chr1 (239-348)||(39162405-39162514)
chr1 (261-349)||(5529627-5529715)
chr1 (241-349)||(27900620-27900728)
chr1 (240-312)||(27900937-27901009)
chr1 (296-352)||(29795254-29795310)
chr1 (236-304)||(35684931-35684999)
chr1 (261-312)||(2998900-2998951)
chr1 (265-312)||(10018728-10018775)
chr1 (237-312)||(50804263-50804338)
chr1 (267-312)||(38951157-38951202)
chr1 (240-348)||(32669978-32670086)
[»] chr5 (23 HSPs)
chr5 (1-73)||(21262494-21262566)
chr5 (2-79)||(33314558-33314635)
chr5 (1-72)||(41174553-41174624)
chr5 (1-75)||(40385124-40385198)
chr5 (1-65)||(24868696-24868760)
chr5 (250-352)||(27001380-27001482)
chr5 (1-74)||(3097439-3097511)
chr5 (262-350)||(22579500-22579588)
chr5 (236-324)||(23159025-23159113)
chr5 (250-348)||(17676792-17676890)
chr5 (255-313)||(22391708-22391766)
chr5 (239-312)||(16127049-16127122)
chr5 (237-347)||(916893-917000)
chr5 (239-351)||(917153-917265)
chr5 (236-348)||(14461770-14461882)
chr5 (237-349)||(26675266-26675378)
chr5 (237-349)||(26946874-26946986)
chr5 (273-349)||(27554313-27554389)
chr5 (240-352)||(29686426-29686538)
chr5 (236-349)||(6217376-6217489)
chr5 (240-349)||(6217640-6217749)
chr5 (284-324)||(463173-463213)
chr5 (276-324)||(30118490-30118538)
[»] chr2 (31 HSPs)
chr2 (237-348)||(40124261-40124372)
chr2 (238-352)||(6788480-6788594)
chr2 (1-73)||(41435501-41435573)
chr2 (1-79)||(19926673-19926751)
chr2 (1-75)||(22066288-22066362)
chr2 (1-73)||(39778542-39778614)
chr2 (1-72)||(7105782-7105853)
chr2 (1-72)||(21344974-21345045)
chr2 (1-75)||(42993695-42993770)
chr2 (238-352)||(20167586-20167700)
chr2 (276-352)||(34883934-34884010)
chr2 (1-63)||(13693432-13693494)
chr2 (1-62)||(10728196-10728257)
chr2 (1-73)||(25187167-25187239)
chr2 (1-65)||(36191475-36191538)
chr2 (250-349)||(7165743-7165842)
chr2 (12-74)||(11964378-11964438)
chr2 (1-75)||(28831186-28831260)
chr2 (247-348)||(21603675-21603776)
chr2 (2-75)||(41462863-41462936)
chr2 (1-67)||(10700122-10700188)
chr2 (263-349)||(18903166-18903252)
chr2 (284-352)||(19206496-19206564)
chr2 (238-310)||(11563327-11563399)
chr2 (294-352)||(8001948-8002006)
chr2 (252-305)||(15818627-15818683)
chr2 (290-324)||(39095109-39095143)
chr2 (247-300)||(5708986-5709039)
chr2 (237-349)||(20360292-20360405)
chr2 (298-350)||(20966212-20966264)
chr2 (235-315)||(39273382-39273462)
[»] chr8 (21 HSPs)
chr8 (1-73)||(8669962-8670034)
chr8 (1-76)||(29226504-29226579)
chr8 (1-73)||(13882313-13882385)
chr8 (1-64)||(8107122-8107185)
chr8 (1-72)||(45177496-45177568)
chr8 (1-72)||(32305937-32306008)
chr8 (1-60)||(37533996-37534055)
chr8 (1-63)||(35634693-35634755)
chr8 (239-348)||(2987143-2987251)
chr8 (236-348)||(21601904-21602015)
chr8 (257-312)||(6915549-6915603)
chr8 (261-312)||(28802304-28802355)
chr8 (240-305)||(8340346-8340411)
chr8 (241-298)||(18080183-18080240)
chr8 (250-317)||(10708363-10708430)
chr8 (261-312)||(17488227-17488278)
chr8 (1-76)||(42570133-42570208)
chr8 (237-347)||(4586747-4586857)
chr8 (240-302)||(7574372-7574434)
chr8 (262-312)||(10029007-10029057)
chr8 (284-324)||(7681032-7681072)
[»] chr3 (34 HSPs)
chr3 (1-78)||(25095889-25095966)
chr3 (1-66)||(30363808-30363873)
chr3 (1-77)||(46320663-46320739)
chr3 (1-72)||(26848053-26848124)
chr3 (1-72)||(48905527-48905598)
chr3 (1-75)||(54748219-54748293)
chr3 (1-74)||(35612909-35612982)
chr3 (1-57)||(9663814-9663870)
chr3 (248-349)||(40619187-40619288)
chr3 (1-73)||(20922665-20922737)
chr3 (259-351)||(22235206-22235298)
chr3 (1-60)||(22515870-22515929)
chr3 (239-348)||(30843802-30843911)
chr3 (240-349)||(34294102-34294211)
chr3 (1-73)||(23026176-23026248)
chr3 (3-67)||(25313559-25313623)
chr3 (236-312)||(46848404-46848480)
chr3 (1-60)||(50834236-50834295)
chr3 (1-60)||(50841558-50841617)
chr3 (12-57)||(49794876-49794921)
chr3 (28-72)||(9663769-9663813)
chr3 (239-307)||(20936561-20936629)
chr3 (240-312)||(26483037-26483109)
chr3 (239-307)||(29079310-29079378)
chr3 (264-312)||(31186452-31186500)
chr3 (284-351)||(3941806-3941873)
chr3 (240-347)||(14984407-14984513)
chr3 (240-349)||(621856-621963)
chr3 (274-312)||(38989763-38989801)
chr3 (290-351)||(7672510-7672570)
chr3 (250-299)||(12832320-12832369)
chr3 (291-352)||(21568527-21568588)
chr3 (247-311)||(30843546-30843610)
chr3 (261-305)||(51889778-51889822)
[»] scaffold0008 (1 HSPs)
scaffold0008 (1-76)||(258214-258289)
[»] chr7 (31 HSPs)
chr7 (5-76)||(18674736-18674807)
chr7 (1-73)||(45062684-45062756)
chr7 (1-72)||(7568072-7568143)
chr7 (1-72)||(48390213-48390284)
chr7 (1-57)||(8417926-8417982)
chr7 (267-347)||(46720016-46720096)
chr7 (240-347)||(5358207-5358314)
chr7 (1-72)||(23319869-23319940)
chr7 (2-73)||(41850906-41850977)
chr7 (250-323)||(8062893-8062966)
chr7 (1-65)||(24989942-24990006)
chr7 (1-73)||(48394054-48394126)
chr7 (250-348)||(14669243-14669341)
chr7 (247-305)||(12927848-12927906)
chr7 (247-312)||(29196760-29196825)
chr7 (261-345)||(20889419-20889503)
chr7 (236-312)||(30601294-30601370)
chr7 (239-351)||(34703628-34703739)
chr7 (250-346)||(38838646-38838742)
chr7 (250-349)||(12849715-12849814)
chr7 (250-349)||(32996499-32996598)
chr7 (250-351)||(32996247-32996348)
chr7 (236-312)||(18942733-18942809)
chr7 (254-345)||(39608582-39608673)
chr7 (238-348)||(40355068-40355178)
chr7 (279-348)||(8929490-8929559)
chr7 (39-80)||(48390480-48390521)
chr7 (272-312)||(5362470-5362510)
chr7 (91-135)||(10189721-10189765)
chr7 (284-312)||(23474551-23474579)
chr7 (276-352)||(29197150-29197226)
[»] chr4 (45 HSPs)
chr4 (1-74)||(36187548-36187621)
chr4 (236-352)||(12034378-12034494)
chr4 (1-77)||(30537519-30537595)
chr4 (240-352)||(46804755-46804867)
chr4 (1-72)||(783022-783093)
chr4 (236-351)||(17381280-17381395)
chr4 (1-72)||(43034023-43034094)
chr4 (1-74)||(26877394-26877467)
chr4 (237-352)||(4161619-4161734)
chr4 (1-72)||(3067955-3068026)
chr4 (247-348)||(17381548-17381649)
chr4 (237-346)||(35255463-35255572)
chr4 (1-73)||(22651745-22651817)
chr4 (251-324)||(24806482-24806555)
chr4 (1-73)||(25934575-25934647)
chr4 (236-312)||(30316036-30316112)
chr4 (1-72)||(27627981-27628052)
chr4 (261-351)||(4215162-4215252)
chr4 (261-347)||(13834508-13834594)
chr4 (261-347)||(45615623-45615709)
chr4 (265-347)||(51226106-51226188)
chr4 (247-348)||(14810440-14810541)
chr4 (265-349)||(971870-971954)
chr4 (236-348)||(11840032-11840144)
chr4 (261-345)||(27395439-27395523)
chr4 (250-346)||(56095201-56095297)
chr4 (265-348)||(924811-924894)
chr4 (1-72)||(50150212-50150282)
chr4 (250-343)||(12922176-12922269)
chr4 (240-312)||(29223115-29223187)
chr4 (239-307)||(46433620-46433688)
chr4 (236-323)||(8170984-8171071)
chr4 (250-349)||(13834337-13834436)
chr4 (284-347)||(32934139-32934202)
chr4 (261-352)||(35763079-35763170)
chr4 (261-324)||(46805038-46805101)
chr4 (289-351)||(23716592-23716654)
chr4 (258-312)||(36218510-36218564)
chr4 (250-312)||(40407671-40407733)
chr4 (248-352)||(8170706-8170811)
chr4 (263-312)||(10462832-10462881)
chr4 (236-312)||(11839764-11839840)
chr4 (236-348)||(31903483-31903595)
chr4 (276-352)||(40317758-40317834)
chr4 (276-352)||(40327832-40327908)
[»] chr6 (20 HSPs)
chr6 (1-65)||(24337916-24337980)
chr6 (1-66)||(1365875-1365939)
chr6 (239-352)||(10219536-10219649)
chr6 (237-352)||(10067715-10067830)
chr6 (237-348)||(19264720-19264830)
chr6 (1-62)||(7243319-7243380)
chr6 (261-345)||(34937450-34937534)
chr6 (237-312)||(6524841-6524916)
chr6 (242-349)||(31142179-31142286)
chr6 (236-305)||(26368922-26368991)
chr6 (236-352)||(515986-516102)
chr6 (277-352)||(27789188-27789263)
chr6 (254-312)||(13382467-13382525)
chr6 (252-345)||(12278025-12278118)
chr6 (290-347)||(24084628-24084685)
chr6 (268-317)||(24759672-24759721)
chr6 (292-349)||(25085082-25085139)
chr6 (271-312)||(29920450-29920491)
chr6 (261-349)||(7792033-7792121)
chr6 (272-312)||(10067486-10067526)
[»] scaffold0045 (1 HSPs)
scaffold0045 (250-312)||(20838-20900)
[»] scaffold0005 (1 HSPs)
scaffold0005 (247-348)||(29187-29288)
[»] scaffold0057 (2 HSPs)
scaffold0057 (1-50)||(30639-30688)
scaffold0057 (1-50)||(30741-30790)
[»] scaffold0329 (1 HSPs)
scaffold0329 (261-312)||(6217-6268)
[»] scaffold0086 (1 HSPs)
scaffold0086 (261-347)||(21856-21942)
[»] scaffold0067 (1 HSPs)
scaffold0067 (1-75)||(6934-7008)
[»] scaffold0003 (1 HSPs)
scaffold0003 (292-352)||(329030-329090)


Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 37)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 69 - 352
Target Start/End: Original strand, 19464044 - 19464327
Alignment:
Q  69 agtattatatttttgtttctttaaagggttcaaagcaaagtataaagtatgagatatgaagtgagttttgattagcttcannnnnnnnaatgaaaatttg 168  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||    
T  19464044 agtattatatttttgtttctttaaagggttcaaagcaaagtataaagtatgagatatgaagtgagttttgattagcttcattttttttaatgaaaatttg 19464143  T
Q  169 gatttctggatttgggtacccgtttctttatgggtctttagttttgggcattctccatttctggttcggggtaatagccactttggtccttaaatgtgta 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| ||||| |||||||||||||||||||||||    
T  19464144 gatttctggatttgggtacccgtttctttatgggtctttagttttgggtgttctccatttctggttcgggctaataaccactttggtccttaaatgtgta 19464243  T
Q  269 acaagtagtcacaacagtccttcaatgtatcaaaattttaaaatggtatctgattggacactctgttagtcaaaatagtctctg 352  Q
    |||||||||||||| ||||||||||||||||||||||| |||||||| |||||||| |||||| ||||||||||||||||||||    
T  19464244 acaagtagtcacaatagtccttcaatgtatcaaaatttaaaaatggtctctgattgaacactccgttagtcaaaatagtctctg 19464327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 5800402 - 5800327
Alignment:
Q  1 tattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtagtattat 76  Q
    |||||||||||||||| |||||| |||||||||||||||||||||||||| |||||||||||||||| ||||||||    
T  5800402 tattttcaatgtatttccttggtcttgatgttttatgtcttttgtttcttgtataaaggaccggagggagtattat 5800327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 35428533 - 35428604
Alignment:
Q  1 tattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtagta 72  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||    
T  35428533 tattttcaatgtattttcttgatgttgatgttttatgtcttttgtttcttttataaatgaccggagatagta 35428604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 30222921 - 30223000
Alignment:
Q  1 tattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtagtattatattt 80  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||| |||||||| |||| |||||||    
T  30222921 tattttcaatgtattttcttggtgttgatattttatgtcttttgttttttatataaagaaccggagggagtactatattt 30223000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 40988032 - 40987954
Alignment:
Q  1 tattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtagtattatatt 79  Q
    |||||||||||||||| ||||||  ||||||||||||||||||||||||| |||||||||||||||| |||||| ||||    
T  40988032 tattttcaatgtatttccttggtcctgatgttttatgtcttttgtttcttgtataaaggaccggaggaagtattgtatt 40987954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 35050269 - 35050208
Alignment:
Q  1 tattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggacc 62  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||    
T  35050269 tattttcaatgtattttcttgatgttgatgttttatgtcttttgtttcttgtataaaggacc 35050208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 16129922 - 16129850
Alignment:
Q  1 tattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtagtat 73  Q
    |||||||||||||||| |||| | |||||||||||||||||||||||||| |||||||||||||||| |||||    
T  16129922 tattttcaatgtatttccttgattttgatgttttatgtcttttgtttcttgtataaaggaccggagggagtat 16129850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 27654833 - 27654905
Alignment:
Q  1 tattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtagtat 73  Q
    |||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||| |||||| |||||    
T  27654833 tattttcaatgtatttccttggtcttgatgttttatgtcttttgtttcttatataaaggatcggagggagtat 27654905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 34546878 - 34546949
Alignment:
Q  1 tattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtagta 72  Q
    |||||||||||||||| ||||||  ||||||||||||||||||||||||| |||||||||||||||| ||||    
T  34546878 tattttcaatgtatttccttggtcctgatgttttatgtcttttgtttcttgtataaaggaccggagggagta 34546949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 16130476 - 16130404
Alignment:
Q  1 tattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtagtat 73  Q
    |||||||||||||||| |||| | |||||||||||| ||||||||||||| |||||||||||||||| |||||    
T  16130476 tattttcaatgtatttccttgatcttgatgttttatctcttttgtttcttgtataaaggaccggagggagtat 16130404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 45192537 - 45192466
Alignment:
Q  1 tattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtagtat 73  Q
    ||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||| |||||||| |||||    
T  45192537 tattttcaatgtattttcttgatgttgatgttt-atgtcttttgtttcttgtataaagaaccggaggaagtat 45192466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 250 - 352
Target Start/End: Original strand, 33747279 - 33747381
Alignment:
Q  250 tttggtccttaaatgtgtaacaagtagtcacaacagtccttcaatgtatcaaaattttaaaatggtatctgattggacactctgttagtcaaaatagtct 349  Q
    ||||| |||| |||||||||||||||||||||| ||| |||||||||||| |||||| ||||  |||| |||||   ||||  |||||||||||||||||    
T  33747279 tttggaccttgaatgtgtaacaagtagtcacaatagttcttcaatgtatcgaaatttcaaaacagtatttgattctgcacttcgttagtcaaaatagtct 33747378  T
Q  350 ctg 352  Q
    |||    
T  33747379 ctg 33747381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 261 - 324
Target Start/End: Complemental strand, 16192329 - 16192266
Alignment:
Q  261 aatgtgtaacaagtagtcacaacagtccttcaatgtatcaaaattttaaaatggtatctgattg 324  Q
    ||||||||||||||||||| || | ||||||||||||||||||||||||||| || ||||||||    
T  16192329 aatgtgtaacaagtagtcataatattccttcaatgtatcaaaattttaaaatagtttctgattg 16192266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 250 - 351
Target Start/End: Original strand, 30519047 - 30519149
Alignment:
Q  250 tttggtccttaaatgtgtaacaagtagtc-acaacagtccttcaatgtatcaaaattttaaaatggtatctgattggacactctgttagtcaaaatagtc 348  Q
    |||||||||| |||||||||||| ||||| |||| ||||||| |||||||| |||||| ||||| || |||||||| ||||| | |  ||||||||||||    
T  30519047 tttggtccttgaatgtgtaacaaatagtccacaatagtccttaaatgtatcgaaatttcaaaatagtctctgattgtacactttatatgtcaaaatagtc 30519146  T
Q  349 tct 351  Q
    |||    
T  30519147 tct 30519149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 9412285 - 9412362
Alignment:
Q  1 tattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtagtattatat 78  Q
    |||||||||||||||| |||||| ||||||||||||||||||| |||||| ||||| | | |||||| |||| |||||    
T  9412285 tattttcaatgtatttccttggtcttgatgttttatgtcttttatttcttgtataaggaatcggagggagtaatatat 9412362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 27846565 - 27846638
Alignment:
Q  1 tattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtagtatt 74  Q
    ||||||||| |||||| ||||||  ||||||||||||||||||||||||| ||||| ||||| |||| ||||||    
T  27846565 tattttcaaagtatttccttggtcctgatgttttatgtcttttgtttcttgtataagggaccagagggagtatt 27846638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 247 - 352
Target Start/End: Original strand, 45679511 - 45679616
Alignment:
Q  247 cactttggtccttaaatgtgtaacaagtagtcacaacagtccttcaatgtatcaaaattttaaaatggtatctgattggacactctgttagtcaaaatag 346  Q
    ||||||||||  | |||||||||| ||||||||||| | ||| |||| |||| ||||||||||||| || | ||||||  |||||| ||||||||||| |    
T  45679511 cactttggtctctgaatgtgtaacgagtagtcacaataatccatcaacgtattaaaattttaaaatagtttttgattgtgcactctattagtcaaaatgg 45679610  T
Q  347 tctctg 352  Q
    ||||||    
T  45679611 tctctg 45679616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 277 - 349
Target Start/End: Original strand, 34826834 - 34826905
Alignment:
Q  277 tcacaacagtccttcaatgtatcaaaattttaaaatggtatctgattggacactctgttagtcaaaatagtct 349  Q
    |||||| |||||||||||||||||||||||||||||  |  |||||||  || ||||||||||||||||||||    
T  34826834 tcacaatagtccttcaatgtatcaaaattttaaaat-atcactgattgtgcattctgttagtcaaaatagtct 34826905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 35121376 - 35121455
Alignment:
Q  1 tattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtagtattatatttt 81  Q
    ||||| ||||||||||| || || ||||||||||||||||||||||| || ||||||||| |||||| |||| ||| ||||    
T  35121376 tatttccaatgtatttt-ttagtcttgatgttttatgtcttttgttttttgtataaaggatcggagggagtagtatttttt 35121455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 261 - 324
Target Start/End: Original strand, 30050321 - 30050384
Alignment:
Q  261 aatgtgtaacaagtagtcacaacagtccttcaatgtatcaaaattttaaaatggtatctgattg 324  Q
    |||||||||||| ||||||||| | | ||||||||||||| ||||||||||| || ||||||||    
T  30050321 aatgtgtaacaaatagtcacaataattcttcaatgtatcataattttaaaatagtctctgattg 30050384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 272 - 315
Target Start/End: Complemental strand, 39162680 - 39162637
Alignment:
Q  272 agtagtcacaacagtccttcaatgtatcaaaattttaaaatggt 315  Q
    ||||||||||| |||||||||||||||| |||||||||||||||    
T  39162680 agtagtcacaatagtccttcaatgtatcgaaattttaaaatggt 39162637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 4813715 - 4813644
Alignment:
Q  1 tattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtagtatt 74  Q
    |||||| ||||||||| |||||| ||  || ||||||| ||||||||||| |||||||||||||||| ||||||    
T  4813715 tatttttaatgtatttccttggtctt--tgatttatgtattttgtttcttatataaaggaccggagggagtatt 4813644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 274 - 352
Target Start/End: Original strand, 8778986 - 8779064
Alignment:
Q  274 tagtcacaacagtccttcaatgtatcaaaattttaaaatggtatctgattggacactctgttagtcaaaatagtctctg 352  Q
    ||||||| | ||||| ||||| ||||||||||| ||||| || ||||||||  |||| ||||||| |||||||||||||    
T  8778986 tagtcacgatagtccctcaatatatcaaaatttcaaaatagtttctgattgtgcactttgttagttaaaatagtctctg 8779064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 23933282 - 23933236
Alignment:
Q  1 tattttcaatgtattttcttggtgttgatgttttatgtcttttgttt 47  Q
    ||||||||||||||||| ||||| |||||| ||||||||||||||||    
T  23933282 tattttcaatgtatttttttggtcttgatgatttatgtcttttgttt 23933236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 236 - 349
Target Start/End: Complemental strand, 6728106 - 6727993
Alignment:
Q  236 ggggtaatagccactttggtccttaaatgtgtaacaagtagtcacaacagtccttcaatgtatcaaaattttaaaatggtatctgattggacactctgtt 335  Q
    ||||| |||| || ||| |||| | |||||||||| | ||||||||| |||||||||||| |||||||||  ||||| || |   ||||  |||| ||||    
T  6728106 ggggtgatagtcattttcgtccctgaatgtgtaacgaatagtcacaatagtccttcaatgaatcaaaattccaaaatagtcttccattgtgcactatgtt 6728007  T
Q  336 agtcaaaatagtct 349  Q
    ||||||||||||||    
T  6728006 agtcaaaatagtct 6727993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 239 - 352
Target Start/End: Complemental strand, 32743437 - 32743324
Alignment:
Q  239 gtaatagccactttggtccttaaatgtgtaacaagtagtcacaacagtccttcaatgtatcaaaattttaaaatggtatctgattggacactctgttagt 338  Q
    ||||||| ||| ||||| ||| |||| |||||||||| ||| |   ||||||||| ||||||||||||||||||  | | |||||| ||| |  ||||||    
T  32743437 gtaatagtcacattggttcttgaatgagtaacaagtaatcatagtggtccttcaacgtatcaaaattttaaaataatctttgattgtacatttcgttagt 32743338  T
Q  339 caaaatagtctctg 352  Q
    ||||||| ||||||    
T  32743337 caaaataatctctg 32743324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 239 - 348
Target Start/End: Original strand, 39162405 - 39162514
Alignment:
Q  239 gtaatagccactttggtccttaaatgtgtaacaagtagtcacaacagtccttcaatgtatcaaaattttaaaatggtatctgattggacactctgttagt 338  Q
    ||||||| || |||||||||| |||| ||||  |||| |||||| ||| |||||||||||  |||||| ||||| || | ||||||  || | |||||||    
T  39162405 gtaatagtcattttggtccttgaatgcgtaatgagtaatcacaatagtacttcaatgtattgaaatttcaaaatagtttttgattgcgcattatgttagt 39162504  T
Q  339 caaaatagtc 348  Q
    ||||||||||    
T  39162505 caaaatagtc 39162514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 349
Target Start/End: Original strand, 5529627 - 5529715
Alignment:
Q  261 aatgtgtaacaagtagtcacaacagtccttcaatgtatcaaaattttaaaatggtatctgattggacactctgttagtcaaaatagtct 349  Q
    |||||||||  ||| ||||||  ||||||||||| ||||||| ||||||||| || ||||||||  |  | ||||||||||||||||||    
T  5529627 aatgtgtaaggagttgtcacagtagtccttcaatatatcaaagttttaaaatagtctctgattgtgcgatttgttagtcaaaatagtct 5529715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 349
Target Start/End: Original strand, 27900620 - 27900728
Alignment:
Q  241 aatagccactttggtccttaaatgtgtaacaagtagtcacaacagtccttcaatgtatcaaaattttaaaatggtatctgattggacactctgttagtca 340  Q
    ||||| ||||||||||||| ||| | |||  | |||| |||| ||||  | ||||||||||||||||||||| ||  |||||||  ||||||  ||||||    
T  27900620 aatagtcactttggtccttgaatatataaagaatagttacaatagtctcttaatgtatcaaaattttaaaatagtccctgattgtgcactctaatagtca 27900719  T
Q  341 aaatagtct 349  Q
    |||||||||    
T  27900720 aaatagtct 27900728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 312
Target Start/End: Complemental strand, 27901009 - 27900937
Alignment:
Q  240 taatagccactttggtccttaaatgtgtaacaagtagtcacaacagtccttcaatgtatcaaaattttaaaat 312  Q
    |||||| || |||| ||||| |||||||||  |||||||| || ||||||||||||||| |||| ||||||||    
T  27901009 taatagtcaatttgatccttgaatgtgtaatgagtagtcagaatagtccttcaatgtataaaaaatttaaaat 27900937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 352
Target Start/End: Complemental strand, 29795310 - 29795254
Alignment:
Q  296 tatcaaaattttaaaatggtatctgattggacactctgttagtcaaaatagtctctg 352  Q
    ||||||||||||||||| |||| ||||||  |||| ||||| |||||||||||||||    
T  29795310 tatcaaaattttaaaatagtatttgattgtgcactatgttaatcaaaatagtctctg 29795254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 304
Target Start/End: Complemental strand, 35684999 - 35684931
Alignment:
Q  236 ggggtaatagccactttggtccttaaatgtgtaacaagtagtcacaacagtccttcaatgtatcaaaat 304  Q
    ||||| |||| ||||||||||| | |||||| ||  |||||| |||| |||||||||||||||||||||    
T  35684999 ggggttatagtcactttggtccctgaatgtgcaatgagtagttacaatagtccttcaatgtatcaaaat 35684931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 261 - 312
Target Start/End: Original strand, 2998900 - 2998951
Alignment:
Q  261 aatgtgtaacaagtagtcacaacagtccttcaatgtatcaaaattttaaaat 312  Q
    ||||||||||||||| |||||| ||||  | |||||||||||||||||||||    
T  2998900 aatgtgtaacaagtaatcacaatagtctgtaaatgtatcaaaattttaaaat 2998951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 265 - 312
Target Start/End: Original strand, 10018728 - 10018775
Alignment:
Q  265 tgtaacaagtagtcacaacagtccttcaatgtatcaaaattttaaaat 312  Q
    |||||| ||||||||||| ||||  |||||||||||||||||||||||    
T  10018728 tgtaaccagtagtcacaatagtctatcaatgtatcaaaattttaaaat 10018775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 237 - 312
Target Start/End: Original strand, 50804263 - 50804338
Alignment:
Q  237 gggtaatagccactttggtccttaaatgtgtaacaagtagtcacaacagtccttcaatgtatcaaaattttaaaat 312  Q
    |||||||||  | ||| |||||| |||||||||| ||| ||||||| |||| || ||||| |||||||||||||||    
T  50804263 gggtaatagttattttagtccttgaatgtgtaacgagtggtcacaatagtctttgaatgtgtcaaaattttaaaat 50804338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 312
Target Start/End: Complemental strand, 38951202 - 38951157
Alignment:
Q  267 taacaagtagtcacaacagtccttcaatgtatcaaaattttaaaat 312  Q
    |||||||||||| ||| | | |||||||||||||||||||||||||    
T  38951202 taacaagtagtcgcaataattcttcaatgtatcaaaattttaaaat 38951157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 348
Target Start/End: Complemental strand, 32670086 - 32669978
Alignment:
Q  240 taatagccactttggtccttaaatgtgtaacaagtagtcacaacagtccttcaatgtatcaaaattttaaaatggtatctgattggacactctgttagtc 339  Q
    |||||| || |||| ||| | |||||||||| |||| |||||| |||||||||||| ||| |||||| ||| | ||  | |||||  |||| |||||| |    
T  32670086 taatagtcattttgatccctgaatgtgtaacgagtattcacaatagtccttcaatggatcgaaatttcaaacttgtcccggattgtgcactatgttaggc 32669987  T
Q  340 aaaatagtc 348  Q
    |||||||||    
T  32669986 aaaatagtc 32669978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 3e-33; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 21262566 - 21262494
Alignment:
Q  1 tattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtagtat 73  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21262566 tattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtagtat 21262494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 2 - 79
Target Start/End: Original strand, 33314558 - 33314635
Alignment:
Q  2 attttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtagtattatatt 79  Q
    ||||||||||||||| |||||| |||||||||||||| ||||||||||| ||||||||| |||||||||||| |||||    
T  33314558 attttcaatgtatttccttggtcttgatgttttatgtattttgtttcttgtataaaggatcggaggtagtatcatatt 33314635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 41174624 - 41174553
Alignment:
Q  1 tattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtagta 72  Q
    |||||||||||||||| |||| | ||||||||||||||||||||||||||  ||||||||||||||| ||||    
T  41174624 tattttcaatgtatttccttgatcttgatgttttatgtcttttgtttcttgcataaaggaccggaggaagta 41174553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 40385198 - 40385124
Alignment:
Q  1 tattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtagtatta 75  Q
    |||||||||||||| |  ||||| |||||||||||||||||||||||||| ||||||||| |||||| |||||||    
T  40385198 tattttcaatgtatatctttggtcttgatgttttatgtcttttgtttcttgtataaaggatcggagggagtatta 40385124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 24868696 - 24868760
Alignment:
Q  1 tattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccgga 65  Q
    |||||||||||||||||||| |  |||||||||||||||||||||||||| ||||||||| ||||    
T  24868696 tattttcaatgtattttcttagacttgatgttttatgtcttttgtttcttgtataaaggatcgga 24868760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 250 - 352
Target Start/End: Complemental strand, 27001482 - 27001380
Alignment:
Q  250 tttggtccttaaatgtgtaacaagtagtcacaacagtccttcaatgtatcaaaattttaaaatggtatctgattggacactctgttagtcaaaatagtct 349  Q
    |||||| ||| |||||||||  ||||||||||| ||||  || || ||||||||||||||||| || ||||||||  |||||||||| ||||||| ||||    
T  27001482 tttggttcttgaatgtgtaatgagtagtcacaatagtctctcgatatatcaaaattttaaaatagtctctgattgtgcactctgttactcaaaatggtct 27001383  T
Q  350 ctg 352  Q
    |||    
T  27001382 ctg 27001380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 3097511 - 3097439
Alignment:
Q  1 tattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtagtatt 74  Q
    |||||||||||||||| |||| | ||||||||||||||| | |||||||| |||||||||||||||| ||||||    
T  3097511 tattttcaatgtatttccttgatcttgatgttttatgtc-tatgtttcttgtataaaggaccggagggagtatt 3097439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 262 - 350
Target Start/End: Complemental strand, 22579588 - 22579500
Alignment:
Q  262 atgtgtaacaagtagtcacaacagtccttcaatgtatcaaaattttaaaatggtatctgattggacactctgttagtcaaaatagtctc 350  Q
    |||||||  ||| |||||||| ||||| |||||||||||||||||||||||  |  ||||||  ||||| ||||| |||||||||||||    
T  22579588 atgtgtatgaagcagtcacaatagtccatcaatgtatcaaaattttaaaataatccctgattatacactttgttaatcaaaatagtctc 22579500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 236 - 324
Target Start/End: Original strand, 23159025 - 23159113
Alignment:
Q  236 ggggtaatagccactttggtccttaaatgtgtaacaagtagtcacaacagtccttcaatgtatcaaaattttaaaatggtatctgattg 324  Q
    |||||||||| |||||| |||| | |||||||||  | |||| | || ||||| ||||||||||||||||||||||| |||| ||||||    
T  23159025 ggggtaatagtcactttagtccctgaatgtgtaatgattagttataatagtccatcaatgtatcaaaattttaaaatagtatttgattg 23159113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 348
Target Start/End: Complemental strand, 17676890 - 17676792
Alignment:
Q  250 tttggtccttaaatgtgtaacaagtagtcacaacagtccttcaatgtatcaaaattttaaaatggtatctgattggacactctgttagtcaaaatagtc 348  Q
    |||||||||| |||||||||| ||||||||||||| ||| |||||  ||| |||| | ||||| || ||||||||   ||| |||||||||||| ||||    
T  17676890 tttggtccttgaatgtgtaacgagtagtcacaacaatccctcaattaatcgaaatatcaaaatagtctctgattgtgaactatgttagtcaaaagagtc 17676792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 255 - 313
Target Start/End: Original strand, 22391708 - 22391766
Alignment:
Q  255 tccttaaatgtgtaacaagtagtcacaacagtccttcaatgtatcaaaattttaaaatg 313  Q
    |||||||||||||||| | |||||| || |||| |||||| ||||||||||||||||||    
T  22391708 tccttaaatgtgtaacgaatagtcataatagtctttcaatatatcaaaattttaaaatg 22391766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 239 - 312
Target Start/End: Original strand, 16127049 - 16127122
Alignment:
Q  239 gtaatagccactttggtccttaaatgtgtaacaagtagtcacaacagtccttcaatgtatcaaaattttaaaat 312  Q
    ||||||| || |||||||| |||||||||||  ||||||||||| ||||  |||| |||||||||||| |||||    
T  16127049 gtaatagtcattttggtccctaaatgtgtaaggagtagtcacaatagtctctcaaagtatcaaaatttcaaaat 16127122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 347
Target Start/End: Original strand, 916893 - 917000
Alignment:
Q  237 gggtaatagccactttggtccttaaatgtgtaacaagtagtcacaacagtccttcaatgtatcaaaattttaaaatggtatctgattggacactctgtta 336  Q
    ||||||||| |||||||||   | ||| ||||||||||| |||||| |||| |||||| |||| ||||| | |||| ||  |||| || ||||||||||     
T  916893 gggtaatagtcactttggt---tgaatttgtaacaagtaatcacaatagtctttcaatctatcgaaattctgaaatagttcctgagtgtacactctgttg 916989  T
Q  337 gtcaaaatagt 347  Q
    |||||||||||    
T  916990 gtcaaaatagt 917000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 351
Target Start/End: Complemental strand, 917265 - 917153
Alignment:
Q  239 gtaatagccactttggtccttaaatgtgtaacaagtagtcacaacagtccttcaatgtatcaaaattttaaaatggtatctgattggacactctgttagt 338  Q
    ||||||| || |||||| | | |||||||||  | |||||||||  |||| |||||||||| |||||||||||| || | |||||| ||||| | ||  |    
T  917265 gtaatagtcattttggttcctgaatgtgtaaatattagtcacaatcgtccctcaatgtatcgaaattttaaaatagtctttgattgtacactttatttat 917166  T
Q  339 caaaatagtctct 351  Q
    |||||||||||||    
T  917165 caaaatagtctct 917153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 348
Target Start/End: Complemental strand, 14461882 - 14461770
Alignment:
Q  236 ggggtaatagccactttggtccttaaatgtgtaacaagtagtcacaacagtccttcaatgtatcaaaattttaaaatggtatctgattggacactctgtt 335  Q
    |||||||||| || |||| ||| ||||| |||||| ||| | ||||| | || |||| | |||  |||||||||||| || |||||||| |||||  |||    
T  14461882 ggggtaatagtcattttgatccctaaatatgtaacgagtggccacaataatctttcagtctattcaaattttaaaatagtctctgattgtacacttcgtt 14461783  T
Q  336 agtcaaaatagtc 348  Q
    |||||||||||||    
T  14461782 agtcaaaatagtc 14461770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 349
Target Start/End: Complemental strand, 26675378 - 26675266
Alignment:
Q  237 gggtaatagccactttggtccttaaatgtgtaacaagtagtcacaacagtccttcaatgtatcaaaattttaaaatggtatctgattggacactctgtta 336  Q
    ||||||||| ||||||||| ||| |||||||||  | || |||||| | || || |||||||||| ||| |||||| || | ||||||  || |||||||    
T  26675378 gggtaatagtcactttggttcttgaatgtgtaatgactaatcacaataatcttttaatgtatcaatattctaaaatagtctttgattgtgcattctgtta 26675279  T
Q  337 gtcaaaatagtct 349  Q
     ||||||||||||    
T  26675278 ctcaaaatagtct 26675266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 349
Target Start/End: Complemental strand, 26946986 - 26946874
Alignment:
Q  237 gggtaatagccactttggtccttaaatgtgtaacaagtagtcacaacagtccttcaatgtatcaaaattttaaaatggtatctgattggacactctgtta 336  Q
    ||||||||| ||||||||| ||| |||||||||  | || |||||| | || || |||||||||| ||| |||||| || | ||||||  || |||||||    
T  26946986 gggtaatagtcactttggttcttgaatgtgtaatgactaatcacaataatcttttaatgtatcaatattctaaaatagtctttgattgtgcattctgtta 26946887  T
Q  337 gtcaaaatagtct 349  Q
     ||||||||||||    
T  26946886 ctcaaaatagtct 26946874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 273 - 349
Target Start/End: Complemental strand, 27554389 - 27554313
Alignment:
Q  273 gtagtcacaacagtccttcaatgtatcaaaattttaaaatggtatctgattggacactctgttagtcaaaatagtct 349  Q
    |||||||||| |||||||||||||||||||||| ||||||  |   | ||||  |||||||||||| ||||||||||    
T  27554389 gtagtcacaatagtccttcaatgtatcaaaattctaaaataatccttaattgtgcactctgttagttaaaatagtct 27554313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 352
Target Start/End: Original strand, 29686426 - 29686538
Alignment:
Q  240 taatagccactttggtccttaaatgtgtaacaagtagtcacaacagtccttcaatgtatcaaaattttaaaatggtatctgattggacactctgttagtc 339  Q
    |||||| ||||||||||| | ||||| |||  ||||||||||| | ||| ||||||||| ||||||| |||||  |   || |||  |||||||||| ||    
T  29686426 taatagtcactttggtccatgaatgtataatgagtagtcacaataatccctcaatgtattaaaatttcaaaatactcattgcttgtgcactctgttaatc 29686525  T
Q  340 aaaatagtctctg 352  Q
    |||||||||||||    
T  29686526 aaaatagtctctg 29686538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 349
Target Start/End: Original strand, 6217376 - 6217489
Alignment:
Q  236 ggggtaatagccactttggtccttaaatgtgtaacaagtagtcacaacagtccttcaatgtatcaaaattttaaaatggtatctgattggacactctgtt 335  Q
    |||||||||| || |||| |  || ||| ||||| ||||||| |||| ||||  | |||||||||||||||||||||  ||||||||||  || | || |    
T  6217376 ggggtaatagtcaatttgatttttgaatatgtaaaaagtagttacaatagtcacttaatgtatcaaaattttaaaataatatctgattgtgcattttgat 6217475  T
Q  336 agtcaaaatagtct 349  Q
    ||| ||||||||||    
T  6217476 agttaaaatagtct 6217489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 349
Target Start/End: Complemental strand, 6217749 - 6217640
Alignment:
Q  240 taatagccactttggtccttaaatgtgtaacaagtagtcacaacagtccttcaatgtatcaaaattttaaaatggtatctgattggacactctgttagtc 339  Q
    |||||| || |||||||| | |||||||| | | ||| ||||| ||||| ||||||||||||||||| ||||| ||   |||||   ||||  |||||||    
T  6217749 taatagtcattttggtccatgaatgtgtagcgaatagccacaatagtccctcaatgtatcaaaatttcaaaatagtccatgattatgcacttcgttagtc 6217650  T
Q  340 aaaatagtct 349  Q
    ||||||||||    
T  6217649 aaaatagtct 6217640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 324
Target Start/End: Original strand, 463173 - 463213
Alignment:
Q  284 agtccttcaatgtatcaaaattttaaaatggtatctgattg 324  Q
    ||||| |||||||||||||||||| |||| |||||||||||    
T  463173 agtccatcaatgtatcaaaattttgaaatagtatctgattg 463213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 276 - 324
Target Start/End: Original strand, 30118490 - 30118538
Alignment:
Q  276 gtcacaacagtccttcaatgtatcaaaattttaaaatggtatctgattg 324  Q
    ||||||| ||| ||||||||||||||||||||||||  || ||||||||    
T  30118490 gtcacaatagttcttcaatgtatcaaaattttaaaacagtctctgattg 30118538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 3e-30; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 237 - 348
Target Start/End: Original strand, 40124261 - 40124372
Alignment:
Q  237 gggtaatagccactttggtccttaaatgtgtaacaagtagtcacaacagtccttcaatgtatcaaaattttaaaatggtatctgattggacactctgtta 336  Q
    ||||||||| ||||||||||||| |||||||||| ||||||||||| ||||| | |||||||| ||||||||||||||| ||||||||  ||||| ||||    
T  40124261 gggtaatagtcactttggtccttgaatgtgtaacgagtagtcacaatagtccattaatgtatcgaaattttaaaatggtctctgattgtgcactccgtta 40124360  T
Q  337 gtcaaaatagtc 348  Q
    ||||||||||||    
T  40124361 gtcaaaatagtc 40124372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 238 - 352
Target Start/End: Complemental strand, 6788594 - 6788480
Alignment:
Q  238 ggtaatagccactttggtccttaaatgtgtaacaagtagtcacaacagtccttcaatgtatcaaaattttaaaatggtatctgattggacactctgttag 337  Q
    |||||||| || |||  |||||||||||||||||| |||||| || |||| |||||||||||||||||||||||| || ||||||||  |||| ||||||    
T  6788594 ggtaatagtcattttcatccttaaatgtgtaacaaatagtcataatagtcattcaatgtatcaaaattttaaaatagtttctgattgtgcactttgttag 6788495  T
Q  338 tcaaaatagtctctg 352  Q
    ||| |||||||||||    
T  6788494 tcagaatagtctctg 6788480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 41435573 - 41435501
Alignment:
Q  1 tattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtagtat 73  Q
    ||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |||||    
T  41435573 tattttcaatgcattttcttggtgttgatgttttatgttttttgtttcttatataaaggaccggagggagtat 41435501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 19926751 - 19926673
Alignment:
Q  1 tattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtagtattatatt 79  Q
    |||||||||||||||| ||||||  |||||||||||| |||||||||||| |||||||||||||||| |||||||||||    
T  19926751 tattttcaatgtatttccttggtcctgatgttttatggcttttgtttcttgtataaaggaccggagggagtattatatt 19926673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 22066362 - 22066288
Alignment:
Q  1 tattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtagtatta 75  Q
    ||||||||||||||||| ||| |||||||||||||||||||||||||||| |||||||||| ||||| |||||||    
T  22066362 tattttcaatgtattttattgatgttgatgttttatgtcttttgtttcttgtataaaggacaggagggagtatta 22066288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 39778614 - 39778542
Alignment:
Q  1 tattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtagtat 73  Q
    |||||||||||||||| |||||| ||||||||||||||||||| |||||| |||||||||||||||| |||||    
T  39778614 tattttcaatgtatttccttggtcttgatgttttatgtcttttatttcttgtataaaggaccggagggagtat 39778542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 7105782 - 7105853
Alignment:
Q  1 tattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtagta 72  Q
    ||||||||||||||||  ||||| |||||||||||||||||||||||||| |||||||||||||||| ||||    
T  7105782 tattttcaatgtatttatttggtcttgatgttttatgtcttttgtttcttgtataaaggaccggagggagta 7105853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 21345045 - 21344974
Alignment:
Q  1 tattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtagta 72  Q
    ||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||| ||||| ||||    
T  21345045 tattttcaatgtatttttttggtcttgatgttttatgtcttttgtttcttgtataaaggactggagggagta 21344974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 42993770 - 42993695
Alignment:
Q  1 tattttcaatgtattttcttggtgttgatgttttatgtc-ttttgtttcttttataaaggaccggaggtagtatta 75  Q
    |||||||||||||||| |||||| ||||||||||||||| ||||||||||| |||||||||||||||| |||||||    
T  42993770 tattttcaatgtatttccttggtcttgatgttttatgtctttttgtttcttgtataaaggaccggagggagtatta 42993695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 238 - 352
Target Start/End: Complemental strand, 20167700 - 20167586
Alignment:
Q  238 ggtaatagccactttggtccttaaatgtgtaacaagtagtcacaacagtccttcaatgtatcaaaattttaaaatggtatctgattggacactctgttag 337  Q
    |||||||| || ||||||| ||||||||||||||||||||||||| ||||  |||||| |||||||||  |||||  |  ||||||| ||||| ||||||    
T  20167700 ggtaatagtcattttggtctttaaatgtgtaacaagtagtcacaatagtcactcaatgcatcaaaattgcaaaatattccctgattgtacactttgttag 20167601  T
Q  338 tcaaaatagtctctg 352  Q
     ||||||||||||||    
T  20167600 acaaaatagtctctg 20167586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 276 - 352
Target Start/End: Original strand, 34883934 - 34884010
Alignment:
Q  276 gtcacaacagtccttcaatgtatcaaaattttaaaatggtatctgattggacactctgttagtcaaaatagtctctg 352  Q
    ||||||| ||||| ||||||||||||||||||||||| || ||| ||||  ||||||||||||||||||||||||||    
T  34883934 gtcacaatagtccctcaatgtatcaaaattttaaaatagtctctaattgtgcactctgttagtcaaaatagtctctg 34884010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 13693494 - 13693432
Alignment:
Q  1 tattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccg 63  Q
    |||||||||||||||| |||| | |||||||||||||||||||||||||| ||||||||||||    
T  13693494 tattttcaatgtatttccttgatcttgatgttttatgtcttttgtttcttgtataaaggaccg 13693432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 10728257 - 10728196
Alignment:
Q  1 tattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggacc 62  Q
    |||||||||||||||| ||| || |||||||||||||||||||||||||| |||||||||||    
T  10728257 tattttcaatgtatttccttagtcttgatgttttatgtcttttgtttcttgtataaaggacc 10728196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 25187167 - 25187239
Alignment:
Q  1 tattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtagtat 73  Q
    |||||||||||||||| ||||||  | ||||||||||||||||||||||| ||||||||||| |||| |||||    
T  25187167 tattttcaatgtatttccttggtcctaatgttttatgtcttttgtttcttgtataaaggaccagagggagtat 25187239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 36191538 - 36191475
Alignment:
Q  1 tattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccgga 65  Q
    |||||||||||||||||||||||  | ||||||||||||||||||||||| ||||||||||||||    
T  36191538 tattttcaatgtattttcttggtcct-atgttttatgtcttttgtttcttgtataaaggaccgga 36191475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 250 - 349
Target Start/End: Complemental strand, 7165842 - 7165743
Alignment:
Q  250 tttggtccttaaatgtgtaacaagtagtcacaacagtccttcaatgtatcaaaattttaaaatggtatctgattggacactctgttagtcaaaatagtct 349  Q
    |||| ||| |||||||||||| ||||||||||| |||| |||||||||| ||||||||||||| || |||||||   |||| | ||||| ||||||||||    
T  7165842 tttgatccctaaatgtgtaacgagtagtcacaatagtctttcaatgtattaaaattttaaaatagtctctgattttgcactttattagttaaaatagtct 7165743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 12 - 74
Target Start/End: Original strand, 11964378 - 11964438
Alignment:
Q  12 tattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtagtatt 74  Q
    |||||||||||||||||||||||  |||||||||||||| |||||||||||||||| ||||||    
T  11964378 tattttcttggtgttgatgtttt--gtcttttgtttcttgtataaaggaccggagggagtatt 11964438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 28831186 - 28831260
Alignment:
Q  1 tattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtagtatta 75  Q
    ||||||||||||||||  |||||  ||||||||||| |||||||| |||| |||||||||||||||| |||||||    
T  28831186 tattttcaatgtatttctttggtcctgatgttttatatcttttgtgtcttgtataaaggaccggagggagtatta 28831260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 247 - 348
Target Start/End: Complemental strand, 21603776 - 21603675
Alignment:
Q  247 cactttggtccttaaatgtgtaacaagtagtcacaacagtccttcaatgtatcaaaattttaaaatggtatctgattggacactctgttagtcaaaatag 346  Q
    ||||||||||||| | ||| || ||||||||||||| |||||||| | |||||||||||| ||||| ||   ||||||  |||| |||||||||||||||    
T  21603776 cactttggtccttgagtgtatagcaagtagtcacaatagtccttcgacgtatcaaaatttcaaaatagtccttgattgtccactttgttagtcaaaatag 21603677  T
Q  347 tc 348  Q
    ||    
T  21603676 tc 21603675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 2 - 75
Target Start/End: Original strand, 41462863 - 41462936
Alignment:
Q  2 attttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtagtatta 75  Q
    ||||||||| ||||| |||| | |||||||||||||||| ||||||||| |||||||||||||| | |||||||    
T  41462863 attttcaatatatttccttgatcttgatgttttatgtctgttgtttcttgtataaaggaccggaaggagtatta 41462936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 10700188 - 10700122
Alignment:
Q  1 tattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggagg 67  Q
    |||||||||||||||| ||||||  |||||||||| || ||||||||||| |||||| |||||||||    
T  10700188 tattttcaatgtatttccttggtcctgatgttttacgttttttgtttcttatataaaagaccggagg 10700122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 263 - 349
Target Start/End: Complemental strand, 18903252 - 18903166
Alignment:
Q  263 tgtgtaacaagtagtcacaacagtccttcaatgtatcaaaattttaaaatggtatctgattggacactctgttagtcaaaatagtct 349  Q
    |||||||| ||||||||||| |||| ||||||||||| ||||| |||||| || ||||||||  |||| ||||| ||||||| ||||    
T  18903252 tgtgtaacgagtagtcacaatagtcattcaatgtatcgaaattctaaaatagtttctgattgtgcactatgttaatcaaaatggtct 18903166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 284 - 352
Target Start/End: Complemental strand, 19206564 - 19206496
Alignment:
Q  284 agtccttcaatgtatcaaaattttaaaatggtatctgattggacactctgttagtcaaaatagtctctg 352  Q
    ||||||| ||||||||||||||||||||| || |||||||   |||| |||||||||||||| ||||||    
T  19206564 agtcctttaatgtatcaaaattttaaaatagtttctgattatgcactttgttagtcaaaatattctctg 19206496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 310
Target Start/End: Original strand, 11563327 - 11563399
Alignment:
Q  238 ggtaatagccactttggtccttaaatgtgtaacaagtagtcacaacagtccttcaatgtatcaaaattttaaa 310  Q
    |||||||| ||||||| |||||||||||||||||| ||   |||| || || |||||||||| ||||||||||    
T  11563327 ggtaatagtcactttgatccttaaatgtgtaacaaataactacaatagcccctcaatgtatcgaaattttaaa 11563399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 294 - 352
Target Start/End: Original strand, 8001948 - 8002006
Alignment:
Q  294 tgtatcaaaattttaaaatggtatctgattggacactctgttagtcaaaatagtctctg 352  Q
    |||| ||||||  |||||| |||| |||||| ||||||| |||||||||||||||||||    
T  8001948 tgtaacaaaatgataaaatagtatttgattgaacactctattagtcaaaatagtctctg 8002006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 305
Target Start/End: Complemental strand, 15818683 - 15818627
Alignment:
Q  252 tggtccttaaatgtgtaacaagtagtcacaacag---tccttcaatgtatcaaaatt 305  Q
    ||||| |||||||||||| |||||||||||| ||   ||||||||||||||||||||    
T  15818683 tggtctttaaatgtgtaataagtagtcacaatagtcctccttcaatgtatcaaaatt 15818627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 290 - 324
Target Start/End: Original strand, 39095109 - 39095143
Alignment:
Q  290 tcaatgtatcaaaattttaaaatggtatctgattg 324  Q
    ||||||||||||||||||||||| |||||||||||    
T  39095109 tcaatgtatcaaaattttaaaatagtatctgattg 39095143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 300
Target Start/End: Original strand, 5708986 - 5709039
Alignment:
Q  247 cactttggtccttaaatgtgtaacaagtagtcacaacagtccttcaatgtatca 300  Q
    ||||||||||||| |||||||||  | || |||||| |||||||||||||||||    
T  5708986 cactttggtccttgaatgtgtaatgattaatcacaatagtccttcaatgtatca 5709039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 349
Target Start/End: Original strand, 20360292 - 20360405
Alignment:
Q  237 gggtaatagccactttggtccttaaatgtgtaacaagtagtcacaacagtccttcaatgtatcaaaatt-ttaaaatggtatctgattggacactctgtt 335  Q
    |||||| || || |||||||  ||||||| |||| ||||||||||| ||||  |||||| |||||||||   ||||| ||  ||| ||| ||||| ||||    
T  20360292 gggtaacagtcattttggtctctaaatgtctaacgagtagtcacaatagtcactcaatgcatcaaaattgcaaaaatagttcctggttgtacactttgtt 20360391  T
Q  336 agtcaaaatagtct 349  Q
    ||||||||||||||    
T  20360392 agtcaaaatagtct 20360405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 350
Target Start/End: Complemental strand, 20966264 - 20966212
Alignment:
Q  298 tcaaaattttaaaatggtatctgattggacactctgttagtcaaaatagtctc 350  Q
    ||||||||||||||| || | ||||||  |||| |||||||||||||||||||    
T  20966264 tcaaaattttaaaatagtctttgattgtgcactttgttagtcaaaatagtctc 20966212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 315
Target Start/End: Complemental strand, 39273462 - 39273382
Alignment:
Q  235 cggggtaatagccactttggtccttaaatgtgtaacaagtagtcacaacagtccttcaatgtatcaaaattttaaaatggt 315  Q
    |||||||||||||| |||||||  | |||||||||  ||||| ||||| ||||| | |||||||  |||||| ||||||||    
T  39273462 cggggtaatagccattttggtctctgaatgtgtaatgagtagccacaatagtccctaaatgtattgaaatttcaaaatggt 39273382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 8669962 - 8670034
Alignment:
Q  1 tattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtagtat 73  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  8669962 tattttcaatgtatttttttggtgttgatgttttatgtcttttgtttcttttataaaggatcggaggtagtat 8670034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 29226504 - 29226579
Alignment:
Q  1 tattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtagtattat 76  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| ||| | ||||||    
T  29226504 tattttcaatgtatttttttggtgttgatgttttatgtcttttgtttcttgtataaaggaccgtagggaatattat 29226579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 13882313 - 13882385
Alignment:
Q  1 tattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtagtat 73  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||||||| |||||| ||||||||| |||||    
T  13882313 tattttcaatgtaatttcttggtgttgatgttttatgttttttgtttcttgtataaaagaccggagggagtat 13882385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 8107122 - 8107185
Alignment:
Q  1 tattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccgg 64  Q
    |||||||||||||||| |||||| |||||||||||||||||||||||||| |||||||||||||    
T  8107122 tattttcaatgtatttccttggtcttgatgttttatgtcttttgtttcttgtataaaggaccgg 8107185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 45177568 - 45177496
Alignment:
Q  1 tattttcaatgt-attttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtagta 72  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||| |||||| ||||    
T  45177568 tattttcaatgttattttcttggtgttgatgttttatgtcttttgttttttgtataaaggatcggagggagta 45177496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 32305937 - 32306008
Alignment:
Q  1 tattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtagta 72  Q
    ||||||||||||||||  || || |||||||||||||||||||||||||| |||||||||||||||| ||||    
T  32305937 tattttcaatgtatttctttagtcttgatgttttatgtcttttgtttcttgtataaaggaccggagggagta 32306008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 37533996 - 37534055
Alignment:
Q  1 tattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaagga 60  Q
    |||||| |||||||||||||| |||||||||||||||||||||||||||| |||||||||    
T  37533996 tatttttaatgtattttcttgatgttgatgttttatgtcttttgtttcttgtataaagga 37534055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 35634755 - 35634693
Alignment:
Q  1 tattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccg 63  Q
    ||||||||||||||||  |||||  ||||||||||||||||||||||||| ||||||||||||    
T  35634755 tattttcaatgtatttctttggtactgatgttttatgtcttttgtttcttgtataaaggaccg 35634693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 239 - 348
Target Start/End: Complemental strand, 2987251 - 2987143
Alignment:
Q  239 gtaatagccactttggtccttaaatgtgtaacaagtagtcacaacagtccttcaatgtatcaaaattttaaaatggtatctgattggacactctgttagt 338  Q
    ||||||| || |||||| | |||||||| ||| | ||||||||| ||| || |||||||||||||||||||||| || |||||||||| ||| |||||||    
T  2987251 gtaatagtcattttggttcctaaatgtgaaacgattagtcacaatagttct-caatgtatcaaaattttaaaatagtctctgattggaaactatgttagt 2987153  T
Q  339 caaaatagtc 348  Q
    |  |||||||    
T  2987152 cggaatagtc 2987143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 236 - 348
Target Start/End: Original strand, 21601904 - 21602015
Alignment:
Q  236 ggggtaatagccactttggtccttaaatgtgtaacaagtagtcacaacagtccttcaatgtatcaaaattttaaaatggtatctgattggacactctgtt 335  Q
    |||||||| | || ||||||||| || | |||||||| ||||||||| ||||| ||||||||||||||||  ||||| || ||||||||  |||  ||||    
T  21601904 ggggtaatggtcattttggtcctgaa-tatgtaacaaatagtcacaatagtccatcaatgtatcaaaattccaaaatagtctctgattgtgcacgttgtt 21602002  T
Q  336 agtcaaaatagtc 348  Q
    ||||||| |||||    
T  21602003 agtcaaagtagtc 21602015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 257 - 312
Target Start/End: Complemental strand, 6915603 - 6915549
Alignment:
Q  257 cttaaatgtgtaacaagtagtcacaacagtccttcaatgtatcaaaattttaaaat 312  Q
    ||||||||||||| ||||| |||||| ||||||| |||||||||||||||||||||    
T  6915603 cttaaatgtgtaataagtaatcacaatagtcctt-aatgtatcaaaattttaaaat 6915549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 261 - 312
Target Start/End: Original strand, 28802304 - 28802355
Alignment:
Q  261 aatgtgtaacaagtagtcacaacagtccttcaatgtatcaaaattttaaaat 312  Q
    |||||||||||| ||||||||| ||||| || ||||||||||||||||||||    
T  28802304 aatgtgtaacaaatagtcacaatagtccatcgatgtatcaaaattttaaaat 28802355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 240 - 305
Target Start/End: Complemental strand, 8340411 - 8340346
Alignment:
Q  240 taatagccactttggtccttaaatgtgtaacaagtagtcacaacagtccttcaatgtatcaaaatt 305  Q
    |||||| || |||||| ||| ||||| |||  ||||||||||||||||||| ||||||||||||||    
T  8340411 taatagtcattttggttcttgaatgtataatgagtagtcacaacagtcctttaatgtatcaaaatt 8340346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 241 - 298
Target Start/End: Original strand, 18080183 - 18080240
Alignment:
Q  241 aatagccactttggtccttaaatgtgtaacaagtagtcacaacagtccttcaatgtat 298  Q
    ||||| || |||||||| |||||||||||||| |||||||||  ||||||||||||||    
T  18080183 aatagtcattttggtccctaaatgtgtaacaaatagtcacaatggtccttcaatgtat 18080240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 250 - 317
Target Start/End: Original strand, 10708363 - 10708430
Alignment:
Q  250 tttggtccttaaatgtgtaacaagtagtcacaacagtccttcaatgtatcaaaattttaaaatggtat 317  Q
    |||||||  |||||||||||||||||  ||||| |||| |||||||||| |||||| |||||| ||||    
T  10708363 tttggtctctaaatgtgtaacaagtaaccacaatagtctttcaatgtatgaaaattctaaaatagtat 10708430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 261 - 312
Target Start/End: Complemental strand, 17488278 - 17488227
Alignment:
Q  261 aatgtgtaacaagtagtcacaacagtccttcaatgtatcaaaattttaaaat 312  Q
    |||||||||||||||||||||| ||||| |||||||| | |||||| |||||    
T  17488278 aatgtgtaacaagtagtcacaatagtccctcaatgtagcgaaatttcaaaat 17488227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 42570133 - 42570208
Alignment:
Q  1 tattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtagtattat 76  Q
    ||||||||||||||||  ||| |  | |||||||||||||||| |||||| ||||||||| |||| | ||||||||    
T  42570133 tattttcaatgtatttctttgatcctaatgttttatgtcttttatttcttatataaaggatcggatggagtattat 42570208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 347
Target Start/End: Original strand, 4586747 - 4586857
Alignment:
Q  237 gggtaatagccactttggtccttaaatgtgtaacaagtagtcacaacagtccttcaatgtatcaaaattttaaaatggtatctgattggacactctgtta 336  Q
    |||||||||  | |||| ||||| |||||||||| |||||| |||| ||||  | ||||||| ||||||||||||| || | |||||   ||||  ||||    
T  4586747 gggtaatagttattttgatccttgaatgtgtaacgagtagttacaatagtctcttaatgtattaaaattttaaaatagtctatgattttgcacttcgtta 4586846  T
Q  337 gtcaaaatagt 347  Q
    |||||||||||    
T  4586847 gtcaaaatagt 4586857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 302
Target Start/End: Original strand, 7574372 - 7574434
Alignment:
Q  240 taatagccactttggtccttaaatgtgtaacaagtagtcacaacagtccttcaatgtatcaaa 302  Q
    |||||| || |||||||||| ||||||||||||||| ||| || |||||  ||||||||||||    
T  7574372 taatagacattttggtccttgaatgtgtaacaagtaatcataatagtcccacaatgtatcaaa 7574434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 312
Target Start/End: Complemental strand, 10029057 - 10029007
Alignment:
Q  262 atgtgtaacaagtagtcacaacagtccttcaatgtatcaaaattttaaaat 312  Q
    ||||| ||| |||||| |||| |||| ||||||||||||||||||||||||    
T  10029057 atgtgcaacgagtagttacaatagtcattcaatgtatcaaaattttaaaat 10029007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 324
Target Start/End: Complemental strand, 7681072 - 7681032
Alignment:
Q  284 agtccttcaatgtatcaaaattttaaaatggtatctgattg 324  Q
    ||||| ||||||||||||||||||||||| |||| ||||||    
T  7681072 agtccctcaatgtatcaaaattttaaaatagtatttgattg 7681032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 25095966 - 25095889
Alignment:
Q  1 tattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtagtattatat 78  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |||| |||||    
T  25095966 tattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttgtataaaggatcggagggagtaatatat 25095889  T

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Target: chr3; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 30363873 - 30363808
Alignment:
Q  1 tattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggag 66  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||||| |||||||||||||||    
T  30363873 tattttcaatgtattttcttggtcctgatgttttatgtcttttgtttcttgtataaaggaccggag 30363808  T

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Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 46320663 - 46320739
Alignment:
Q  1 tattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtagtattata 77  Q
    ||||||||||||||||  ||||| |||||||||||||||| ||||||||| |||||||||||||||| |||||||||    
T  46320663 tattttcaatgtatttctttggtcttgatgttttatgtctgttgtttcttgtataaaggaccggagggagtattata 46320739  T

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Target: chr3; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 26848124 - 26848053
Alignment:
Q  1 tattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtagta 72  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| || |||||| ||||    
T  26848124 tattttcaatgtatttttttggtgttgatgttttatgtcttttgtttcttgtataaaagatcggagggagta 26848053  T

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Target: chr3; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 48905598 - 48905527
Alignment:
Q  1 tattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtagta 72  Q
    |||||||||||||||| ||| || |||||||||||||||||||||||||| |||||||||||||||| ||||    
T  48905598 tattttcaatgtatttccttagtcttgatgttttatgtcttttgtttcttgtataaaggaccggagggagta 48905527  T

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Target: chr3; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 54748219 - 54748293
Alignment:
Q  1 tattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtagtatta 75  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||  ||||| |||||||    
T  54748219 tattttcaacgtattttcttggtgttgatgttttatgtcttttgtttattgtataaaggattggagggagtatta 54748293  T

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Target: chr3; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 35612982 - 35612909
Alignment:
Q  1 tattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtagtatt 74  Q
    |||||||||||||||| ||||||  |||||||||||||||||| |||||| |||||||||| ||||| ||||||    
T  35612982 tattttcaatgtatttccttggtcctgatgttttatgtcttttatttcttgtataaaggactggagggagtatt 35612909  T

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Target: chr3; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 9663870 - 9663814
Alignment:
Q  1 tattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaa 57  Q
    |||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||    
T  9663870 tattttcaatgtatttccttggtcttgatgttttatgtcttttgtttcttgtataaa 9663814  T

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Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 248 - 349
Target Start/End: Complemental strand, 40619288 - 40619187
Alignment:
Q  248 actttggtccttaaatgtgtaacaagtagtcacaacagtccttcaatgtatcaaaattttaaaatggtatctgattggacactctgttagtcaaaatagt 347  Q
    |||||| ||||| |||||||||  |||||||| |  | ||| ||||||||||||||||||||||| || ||||||||  |||| ||||| ||||||||||    
T  40619288 actttgatccttgaatgtgtaatgagtagtcatattaatccctcaatgtatcaaaattttaaaatagtctctgattgtgcactatgttattcaaaatagt 40619189  T
Q  348 ct 349  Q
    ||    
T  40619188 ct 40619187  T

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Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 20922737 - 20922665
Alignment:
Q  1 tattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtagtat 73  Q
    |||||||||||||||| ||| ||  | |||||||||||||||||||| || |||||||||||||||| |||||    
T  20922737 tattttcaatgtatttccttagtcctaatgttttatgtcttttgttttttgtataaaggaccggagggagtat 20922665  T

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Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 259 - 351
Target Start/End: Original strand, 22235206 - 22235298
Alignment:
Q  259 taaatgtgtaacaagtagtcacaacagtccttcaatgtatcaaaattttaaaatggtatctgattggacactctgttagtcaaaatagtctct 351  Q
    ||||||||||| || ||| ||||| ||||||| ||||||| ||||||| ||||| ||  ||||||| |||||  |||||||||||||||||||    
T  22235206 taaatgtgtaataaatagccacaatagtccttgaatgtattaaaatttcaaaatagtcgctgattgtacacttcgttagtcaaaatagtctct 22235298  T

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Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 22515870 - 22515929
Alignment:
Q  1 tattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaagga 60  Q
    |||||||||||||||| ||| ||  ||||||||||||||||||||||||| |||||||||    
T  22515870 tattttcaatgtatttccttagtcctgatgttttatgtcttttgtttcttgtataaagga 22515929  T

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Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 348
Target Start/End: Complemental strand, 30843911 - 30843802
Alignment:
Q  239 gtaatagccactttggtccttaaatgtgtaacaagtagtcacaacagtccttcaatgtatcaaaattttaaaatggtatctgattggacactctgttagt 338  Q
    ||||||| ||||||||| | | |||||||||  ||||||||||| ||||  | ||||||||||||||  ||||| || ||||||||  |||| ||||| |    
T  30843911 gtaatagtcactttggttcctgaatgtgtaatgagtagtcacaatagtctcttaatgtatcaaaattccaaaatagtctctgattgtgcactttgttaat 30843812  T
Q  339 caaaatagtc 348  Q
    ||||||||||    
T  30843811 caaaatagtc 30843802  T

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Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 240 - 349
Target Start/End: Complemental strand, 34294211 - 34294102
Alignment:
Q  240 taatagccactttggtccttaaatgtgtaacaagtagtcacaacagtccttcaatgtatcaaaattttaaaatggtatctgattggacactctgttagtc 339  Q
    |||||| || |||| |||||||||||||||| ||||   |||||| |   ||| ||||||||||| ||||||| |||| ||||||  |||| ||||||||    
T  34294211 taatagtcattttgatccttaaatgtgtaacgagtaactacaacaatatctcagtgtatcaaaatcttaaaatagtatatgattgtgcactttgttagtc 34294112  T
Q  340 aaaatagtct 349  Q
    ||||||||||    
T  34294111 aaaatagtct 34294102  T

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Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 23026248 - 23026176
Alignment:
Q  1 tattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtagtat 73  Q
    ||||||||||||||||  ||| |  |||| |||||||||||||||||||| ||||||||| |||||| |||||    
T  23026248 tattttcaatgtatttctttgatcctgatattttatgtcttttgtttcttgtataaaggatcggagggagtat 23026176  T

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Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 3 - 67
Target Start/End: Original strand, 25313559 - 25313623
Alignment:
Q  3 ttttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggagg 67  Q
    |||| |||||||||| |||||  ||||||||||||||||||||||||| |||||| || ||||||    
T  25313559 ttttaaatgtatttttttggtcctgatgttttatgtcttttgtttcttgtataaaagatcggagg 25313623  T

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Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 236 - 312
Target Start/End: Complemental strand, 46848480 - 46848404
Alignment:
Q  236 ggggtaatagccactttggtccttaaatgtgtaacaagtagtcacaacagtccttcaatgtatcaaaattttaaaat 312  Q
    |||||||||| ||||||||||| | |||||||||  |||||||| || ||| | ||||||||||||||||| |||||    
T  46848480 ggggtaatagtcactttggtccctgaatgtgtaatgagtagtcaaaatagttcctcaatgtatcaaaatttcaaaat 46848404  T

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Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 50834236 - 50834295
Alignment:
Q  1 tattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaagga 60  Q
    |||||||||| ||||| ||| ||  ||||||||||||||||||||||||| |||||||||    
T  50834236 tattttcaatatatttccttagtcctgatgttttatgtcttttgtttcttgtataaagga 50834295  T

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Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 50841617 - 50841558
Alignment:
Q  1 tattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaagga 60  Q
    |||||||||| ||||| ||| ||  ||||||||||||||||||||||||| |||||||||    
T  50841617 tattttcaatatatttccttagtcctgatgttttatgtcttttgtttcttgtataaagga 50841558  T

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Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 12 - 57
Target Start/End: Complemental strand, 49794921 - 49794876
Alignment:
Q  12 tattttcttggtgttgatgttttatgtcttttgtttcttttataaa 57  Q
    ||||||| |||| |||||||||||||||||||||||||| ||||||    
T  49794921 tattttcatggtcttgatgttttatgtcttttgtttcttgtataaa 49794876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 72
Target Start/End: Complemental strand, 9663813 - 9663769
Alignment:
Q  28 atgttttatgtcttttgtttcttttataaaggaccggaggtagta 72  Q
    ||||||||||||||||||||||| ||||||||| |||||| ||||    
T  9663813 atgttttatgtcttttgtttcttgtataaaggatcggagggagta 9663769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 307
Target Start/End: Complemental strand, 20936629 - 20936561
Alignment:
Q  239 gtaatagccactttggtccttaaatgtgtaacaagtagtcacaacagtccttcaatgtatcaaaatttt 307  Q
    ||||||| || |||||||| ||| ||| |||| ||| |||||||  |||||||||||||||||||||||    
T  20936629 gtaatagtcattttggtccataattgtttaacgagtggtcacaattgtccttcaatgtatcaaaatttt 20936561  T

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Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 312
Target Start/End: Original strand, 26483037 - 26483109
Alignment:
Q  240 taatagccactttggtccttaaatgtgtaacaagtagtcacaacagtccttcaatgtatcaaaattttaaaat 312  Q
    |||||| || ||||||||||| |||| |||| ||||| ||||| |||| || |||||||||||||| ||||||    
T  26483037 taatagtcattttggtccttagatgtataacgagtagacacaatagtcatttaatgtatcaaaattctaaaat 26483109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 307
Target Start/End: Complemental strand, 29079378 - 29079310
Alignment:
Q  239 gtaatagccactttggtccttaaatgtgtaacaagtagtcacaacagtccttcaatgtatcaaaatttt 307  Q
    ||||||| || |||||||| ||| ||| |||| ||| |||||||  |||||||||||||||||||||||    
T  29079378 gtaatagtcattttggtccataattgtataacgagtggtcacaattgtccttcaatgtatcaaaatttt 29079310  T

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Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 264 - 312
Target Start/End: Original strand, 31186452 - 31186500
Alignment:
Q  264 gtgtaacaagtagtcacaacagtccttcaatgtatcaaaattttaaaat 312  Q
    |||||||||||||| |||| |||| |||||||||||||||||| |||||    
T  31186452 gtgtaacaagtagttacaatagtctttcaatgtatcaaaatttcaaaat 31186500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 284 - 351
Target Start/End: Complemental strand, 3941873 - 3941806
Alignment:
Q  284 agtccttcaatgtatcaaaattttaaaatggtatctgattggacactctgttagtcaaaatagtctct 351  Q
    ||||||| ||||||||||||||||||||| ||   | |||| ||| | ||||||||||||||||||||    
T  3941873 agtcctttaatgtatcaaaattttaaaatagtccttaattgaacattttgttagtcaaaatagtctct 3941806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 240 - 347
Target Start/End: Original strand, 14984407 - 14984513
Alignment:
Q  240 taatagccactttggtccttaaatgtgtaacaagtagtcacaacagtccttcaatgtatcaaaattttaaaatggtatctgattggacactctgttagtc 339  Q
    |||||| || ||||||||| || |||||||| ||||||||||| ||||| ||||| |||| |||||| |||||  |  |||||||  ||||  |||||||    
T  14984407 taatagtcattttggtcctgaa-tgtgtaacgagtagtcacaatagtccctcaatatatcgaaatttcaaaatactccctgattgtgcacttcgttagtc 14984505  T
Q  340 aaaatagt 347  Q
    ||||||||    
T  14984506 aaaatagt 14984513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 349
Target Start/End: Complemental strand, 621963 - 621856
Alignment:
Q  240 taatagccactttggtccttaaatgtgtaacaagtagtcacaacagtccttcaatgtatcaaaattttaaaatggtatctgattggacactctgttagtc 339  Q
    |||||| ||||||||||  | |||||||||  |||||||| || ||||  ||||||||||||||||| ||||| ||  || | ||  |||| ||||||||    
T  621963 taatagtcactttggtctctgaatgtgtaatgagtagtcataatagtc--tcaatgtatcaaaatttcaaaatagtccctaactgtgcactttgttagtc 621866  T
Q  340 aaaatagtct 349  Q
    ||||||||||    
T  621865 aaaatagtct 621856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 274 - 312
Target Start/End: Original strand, 38989763 - 38989801
Alignment:
Q  274 tagtcacaacagtccttcaatgtatcaaaattttaaaat 312  Q
    ||||||||| ||||| |||||||||||||||||||||||    
T  38989763 tagtcacaatagtccatcaatgtatcaaaattttaaaat 38989801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 351
Target Start/End: Complemental strand, 7672570 - 7672510
Alignment:
Q  290 tcaatgtatcaaaattttaaaatggtatctgattggacactctgttagtcaaaatagtctct 351  Q
    ||||||||| ||||||||||| || | |||||||| ||| | ||||||||||||||||||||    
T  7672570 tcaatgtattaaaattttaaattg-tctctgattgtacattttgttagtcaaaatagtctct 7672510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 299
Target Start/End: Complemental strand, 12832369 - 12832320
Alignment:
Q  250 tttggtccttaaatgtgtaacaagtagtcacaacagtccttcaatgtatc 299  Q
    |||||||| ||||||||||| |||||| ||||| |||| |||||||||||    
T  12832369 tttggtccctaaatgtgtaataagtagacacaatagtctttcaatgtatc 12832320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 352
Target Start/End: Complemental strand, 21568588 - 21568527
Alignment:
Q  291 caatgtatcaaaattttaaaatggtatctgattggacactctgttagtcaaaatagtctctg 352  Q
    ||||||||||||| |||||||| || | |||| |  |||||||||| |||||||||||||||    
T  21568588 caatgtatcaaaaatttaaaatagtctttgatagtgcactctgttattcaaaatagtctctg 21568527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 311
Target Start/End: Original strand, 30843546 - 30843610
Alignment:
Q  247 cactttggtccttaaatgtgtaacaagtagtcacaacagtccttcaatgtatcaaaattttaaaa 311  Q
    |||||||||||||  ||||||||  ||||||||||| |||| |||||||||| | ||||| ||||    
T  30843546 cactttggtccttgcatgtgtaatgagtagtcacaatagtctttcaatgtataagaatttcaaaa 30843610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 305
Target Start/End: Original strand, 51889778 - 51889822
Alignment:
Q  261 aatgtgtaacaagtagtcacaacagtccttcaatgtatcaaaatt 305  Q
    |||||||||  ||||||||||| |||| |||||||||||||||||    
T  51889778 aatgtgtaaggagtagtcacaatagtctttcaatgtatcaaaatt 51889822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 258289 - 258214
Alignment:
Q  1 tattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtagtattat 76  Q
    |||||||||||||||| |||||| |||||||||||||||||||||||||| |||||||||||||||| ||||||||    
T  258289 tattttcaatgtatttccttggtcttgatgttttatgtcttttgtttcttgtataaaggaccggagggagtattat 258214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 5 - 76
Target Start/End: Original strand, 18674736 - 18674807
Alignment:
Q  5 ttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtagtattat 76  Q
    |||||||||||| |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  18674736 ttcaatgtatttccttggtcttgatgttttatgtcttttgtttcttgtataaaggaccggaggtagtattat 18674807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 45062684 - 45062756
Alignment:
Q  1 tattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtagtat 73  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| | |||| |||||    
T  45062684 tattttcaatgtattttcttgatgttgatgttttatgtcttttgtttcttgtataaaggatcagaggaagtat 45062756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 7568143 - 7568072
Alignment:
Q  1 tattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtagta 72  Q
    |||||||||||||||| |||||| |||||||||||||||||||||||||| || ||||||||||||| ||||    
T  7568143 tattttcaatgtatttccttggtcttgatgttttatgtcttttgtttcttgtacaaaggaccggagggagta 7568072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 48390284 - 48390213
Alignment:
Q  1 tattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtagta 72  Q
    |||||||||||||||| |||| | |||||||||||||||||||||||||| |||||||||||||||| ||||    
T  48390284 tattttcaatgtatttccttgatcttgatgttttatgtcttttgtttcttgtataaaggaccggagggagta 48390213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 8417926 - 8417982
Alignment:
Q  1 tattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaa 57  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  8417926 tatttttaatgtattttcttggtgttgatgttttatgtcttttgtttcttgtataaa 8417982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 267 - 347
Target Start/End: Complemental strand, 46720096 - 46720016
Alignment:
Q  267 taacaagtagtcacaacagtccttcaatgtatcaaaattttaaaatggtatctgattggacactctgttagtcaaaatagt 347  Q
    |||||||||||||||| ||||| |||||||||  ||||||||||||||||| ||||||  |||| ||||||||||||||||    
T  46720096 taacaagtagtcacaatagtccctcaatgtattgaaattttaaaatggtatttgattgtgcactttgttagtcaaaatagt 46720016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 240 - 347
Target Start/End: Original strand, 5358207 - 5358314
Alignment:
Q  240 taatagccactttggtccttaaatgtgtaacaagtagtcacaacagtccttcaatgtatcaaaattttaaaatggtatctgattggacactctgttagtc 339  Q
    |||||| ||||||  ||| |||||||||||  | |||| |||| ||||||||||||||||||||||||||||| || ||||||||   ||||| ||||||    
T  5358207 taatagtcactttcatccctaaatgtgtaatgaatagttacaatagtccttcaatgtatcaaaattttaaaatagtctctgattgtgtactctattagtc 5358306  T
Q  340 aaaatagt 347  Q
    ||||||||    
T  5358307 aaaatagt 5358314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 23319940 - 23319869
Alignment:
Q  1 tattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtagta 72  Q
    ||||||||||||| || ||||||  ||||||||||||||||||||||||| |||||||||||||||| ||||    
T  23319940 tattttcaatgtaattccttggtcctgatgttttatgtcttttgtttcttgtataaaggaccggagggagta 23319869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 2 - 73
Target Start/End: Complemental strand, 41850977 - 41850906
Alignment:
Q  2 attttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtagtat 73  Q
    ||||||||||||||| ||||||  ||||||||||||||||||||||||| ||||||||| |||||| |||||    
T  41850977 attttcaatgtatttccttggtcctgatgttttatgtcttttgtttcttgtataaaggatcggagggagtat 41850906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 250 - 323
Target Start/End: Complemental strand, 8062966 - 8062893
Alignment:
Q  250 tttggtccttaaatgtgtaacaagtagtcacaacagtccttcaatgtatcaaaattttaaaatggtatctgatt 323  Q
    |||||||||| |||||||||| ||||||||||| ||||  ||||||||| ||||||||||||| ||||||||||    
T  8062966 tttggtccttgaatgtgtaacgagtagtcacaatagtctgtcaatgtattaaaattttaaaatagtatctgatt 8062893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 24989942 - 24990006
Alignment:
Q  1 tattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccgga 65  Q
    |||||| |||||||||||||||| || ||||||||||||||||||||||| |||||| |||||||    
T  24989942 tattttaaatgtattttcttggtattaatgttttatgtcttttgtttcttgtataaaagaccgga 24990006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 48394126 - 48394054
Alignment:
Q  1 tattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtagtat 73  Q
    |||||||||||||||| ||||||  |||||||||||| |||||||||||| ||||||||| |||||| |||||    
T  48394126 tattttcaatgtatttccttggtcctgatgttttatggcttttgtttcttgtataaaggatcggagggagtat 48394054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 250 - 348
Target Start/End: Original strand, 14669243 - 14669341
Alignment:
Q  250 tttggtccttaaatgtgtaacaagtagtcacaacagtccttcaatgtatcaaaattttaaaatggtatctgattggacactctgttagtcaaaatagtc 348  Q
    |||||||||| |||||||||| ||||||||||||| ||| |||||  ||| |||| | ||||| || ||||||||  |||| |||||||||||||||||    
T  14669243 tttggtccttgaatgtgtaacgagtagtcacaacaatccctcaattaatcgaaatatcaaaatagtctctgattgtgcactatgttagtcaaaatagtc 14669341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 247 - 305
Target Start/End: Complemental strand, 12927906 - 12927848
Alignment:
Q  247 cactttggtccttaaatgtgtaacaagtagtcacaacagtccttcaatgtatcaaaatt 305  Q
    |||||| |||||| |||||||| ||||||||||||| |||||||| |||||||||||||    
T  12927906 cactttagtccttgaatgtgtagcaagtagtcacaatagtccttcgatgtatcaaaatt 12927848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 247 - 312
Target Start/End: Original strand, 29196760 - 29196825
Alignment:
Q  247 cactttggtccttaaatgtgtaacaagtagtcacaacagtccttcaatgtatcaaaattttaaaat 312  Q
    ||||||||||||  |||||||||| | ||||||||| |||  ||||||||||||||||||||||||    
T  29196760 cactttggtcctcgaatgtgtaacgaatagtcacaatagtttttcaatgtatcaaaattttaaaat 29196825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 261 - 345
Target Start/End: Complemental strand, 20889503 - 20889419
Alignment:
Q  261 aatgtgtaacaagtagtcacaacagtccttcaatgtatcaaaattttaaaatggtatctgattggacactctgttagtcaaaata 345  Q
    |||||||||||||||| ||||| ||||| |||||||||||| |||| |||||  | |||||||| | ||| | ||||||||||||    
T  20889503 aatgtgtaacaagtagccacaatagtccctcaatgtatcaacatttcaaaataatctctgattgcatactttattagtcaaaata 20889419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 236 - 312
Target Start/End: Original strand, 30601294 - 30601370
Alignment:
Q  236 ggggtaatagccactttggtccttaaatgtgtaacaagtagtcacaacagtccttcaatgtatcaaaattttaaaat 312  Q
    ||||||||||  |||||||||| |||||||||||  | |||||| || ||| ||||||||| |||||||||||||||    
T  30601294 ggggtaatagttactttggtccctaaatgtgtaatgattagtcataatagttcttcaatgtttcaaaattttaaaat 30601370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 239 - 351
Target Start/End: Original strand, 34703628 - 34703739
Alignment:
Q  239 gtaatagccactttggtccttaaatgtgtaacaagtagtcacaacagtccttcaatgtatcaaaattttaaaatggtatctgattggacactctgttagt 338  Q
    ||||||| || |||| ||| ||||||| |||| ||||||||||| ||||| |||||||||| |||||||||||| || ||| ||||  ||||  |||  |    
T  34703628 gtaatagtcattttgatccataaatgtataacgagtagtcacaatagtccatcaatgtatc-aaattttaaaatagtctctaattgttcacttcgttgat 34703726  T
Q  339 caaaatagtctct 351  Q
    |||||||||||||    
T  34703727 caaaatagtctct 34703739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 250 - 346
Target Start/End: Complemental strand, 38838742 - 38838646
Alignment:
Q  250 tttggtccttaaatgtgtaacaagtagtcacaacagtccttcaatgtatcaaaattttaaaatggtatctgattggacactctgttagtcaaaatag 346  Q
    |||||||| | |||||||||| ||||||||||| | ||  ||||||||| ||||||||||||| || |||||||   || | |||||||||||||||    
T  38838742 tttggtccctgaatgtgtaacgagtagtcacaatattctatcaatgtattaaaattttaaaatagtctctgattttgcattttgttagtcaaaatag 38838646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 250 - 349
Target Start/End: Complemental strand, 12849814 - 12849715
Alignment:
Q  250 tttggtccttaaatgtgtaacaagtagtcacaacagtccttcaatgtatcaaaattttaaaatggtatctgattggacactctgttagtcaaaatagtct 349  Q
    |||||| ||| |||||| ||  ||||||||||| |||| || ||||||||||||||  ||||| || ||||||||  |||| |||||||| |||||||||    
T  12849814 tttggttcttgaatgtgcaatgagtagtcacaatagtcttttaatgtatcaaaattacaaaatagtctctgattgtgcactttgttagtcgaaatagtct 12849715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 250 - 349
Target Start/End: Complemental strand, 32996598 - 32996499
Alignment:
Q  250 tttggtccttaaatgtgtaacaagtagtcacaacagtccttcaatgtatcaaaattttaaaatggtatctgattggacactctgttagtcaaaatagtct 349  Q
    |||||||||| ||||| |||  | |||| |||| ||||| |||||| ||||||||| |||||| || ||||||||  |||| ||||| ||||||||||||    
T  32996598 tttggtccttgaatgtctaatgaatagtgacaatagtccctcaatgcatcaaaattctaaaatagtctctgattgtgcactttgttaatcaaaatagtct 32996499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 250 - 351
Target Start/End: Original strand, 32996247 - 32996348
Alignment:
Q  250 tttggtccttaaatgtgtaacaagtagtcacaacagtccttcaatgtatcaaaattttaaaatggtatctgattggacactctgttagtcaaaatagtct 349  Q
    |||||||||||||||||||| || |||| | ||   |||||||||||||| |||||| ||||| || |||||||| |||||   || || ||||||||||    
T  32996247 tttggtccttaaatgtgtaataaatagttataatgatccttcaatgtatcgaaatttaaaaatagtctctgattgtacacttcatttgttaaaatagtct 32996346  T
Q  350 ct 351  Q
    ||    
T  32996347 ct 32996348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 312
Target Start/End: Original strand, 18942733 - 18942809
Alignment:
Q  236 ggggtaatagccactttggtccttaaatgtgtaacaagtagtcacaacagtccttcaatgtatcaaaattttaaaat 312  Q
    |||||||||| || |||||||| | |||||||||  | |||||| || ||||  |||||||||||||||||||||||    
T  18942733 ggggtaatagtcattttggtccctgaatgtgtaaggaatagtcataatagtcactcaatgtatcaaaattttaaaat 18942809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 254 - 345
Target Start/End: Complemental strand, 39608673 - 39608582
Alignment:
Q  254 gtccttaaatgtgtaacaagtagtcacaacagtccttcaatgtatcaaaattttaaaatggtatctgattggacactctgttagtcaaaata 345  Q
    |||||| |||||||||  |||||| |||| |||  |||||||||||||||||||||||| || |   |||| ||| | ||||||||||||||    
T  39608673 gtccttgaatgtgtaaggagtagttacaatagtttttcaatgtatcaaaattttaaaatagttttgaattgtacaatttgttagtcaaaata 39608582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 348
Target Start/End: Complemental strand, 40355178 - 40355068
Alignment:
Q  238 ggtaatagccactttggtccttaaatgtgtaacaagtagtcacaacagtccttcaatgtatcaaaattttaaaatggtatctgattggacactctgttag 337  Q
    |||||||| || ||||||| || |||||||||| ||||||   || |||| |||||  || | |||||| ||||| || ||||||||  |||| ||||||    
T  40355178 ggtaatagtcattttggtctttgaatgtgtaacgagtagttgtaatagtcgttcaacataccgaaatttgaaaatagtctctgattgtgcactatgttag 40355079  T
Q  338 tcaaaatagtc 348  Q
    |||||||||||    
T  40355078 tcaaaatagtc 40355068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 348
Target Start/End: Original strand, 8929490 - 8929559
Alignment:
Q  279 acaacagtccttcaatgtatcaaaattttaaaatggtatctgattggacactctgttagtcaaaatagtc 348  Q
    ||||||||| || ||||||| ||||||||||||| || | |||||   |||| |||||||||||||||||    
T  8929490 acaacagtcttttaatgtattaaaattttaaaatagtttttgattttgcactttgttagtcaaaatagtc 8929559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 80
Target Start/End: Original strand, 48390480 - 48390521
Alignment:
Q  39 cttttgtttcttttataaaggaccggaggtagtattatattt 80  Q
    |||||||||||  || ||||||||||||||||||||||||||    
T  48390480 cttttgtttctaataaaaaggaccggaggtagtattatattt 48390521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 312
Target Start/End: Complemental strand, 5362510 - 5362470
Alignment:
Q  272 agtagtcacaacagtccttcaatgtatcaaaattttaaaat 312  Q
    ||||||||||| | || ||||||||||||||||||||||||    
T  5362510 agtagtcacaataatcattcaatgtatcaaaattttaaaat 5362470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 91 - 135
Target Start/End: Complemental strand, 10189765 - 10189721
Alignment:
Q  91 aaagggttcaaagcaaagtataaagtatgagatatgaagtgagtt 135  Q
    |||| ||||||||| |||||| ||||||| |||||||||||||||    
T  10189765 aaagagttcaaagccaagtatgaagtatgtgatatgaagtgagtt 10189721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 312
Target Start/End: Original strand, 23474551 - 23474579
Alignment:
Q  284 agtccttcaatgtatcaaaattttaaaat 312  Q
    |||||||||||||||||||||||||||||    
T  23474551 agtccttcaatgtatcaaaattttaaaat 23474579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 276 - 352
Target Start/End: Complemental strand, 29197226 - 29197150
Alignment:
Q  276 gtcacaacagtccttcaatgtatcaaaattttaaaatggtatctgattggacactctgttagtcaaaatagtctctg 352  Q
    ||||||||| | | |||||| |||||||||||||||| || | ||||||  |||||||||| ||||| ||| |||||    
T  29197226 gtcacaacacttcctcaatgcatcaaaattttaaaatagtttttgattgtgcactctgttaatcaaagtagcctctg 29197150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 45)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 36187548 - 36187621
Alignment:
Q  1 tattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtagtatt 74  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| ||||||||| ||||||    
T  36187548 tattttcaatgtattttcttggtcttgatgttttatgtcttttgtttcttgtataaaagaccggagggagtatt 36187621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 236 - 352
Target Start/End: Original strand, 12034378 - 12034494
Alignment:
Q  236 ggggtaatagccactttggtccttaaatgtgtaacaagtagtcacaacagtccttcaatgtatcaaaattttaaaatggtatctgattggacactctgtt 335  Q
    |||||||||| || |||||||| | ||||| |||| ||||||||||| ||||| ||||||||||||||||  ||||| || |||||||| | ||| ||||    
T  12034378 ggggtaatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtctctgattgtatactttgtt 12034477  T
Q  336 agtcaaaatagtctctg 352  Q
    |||||||||||||||||    
T  12034478 agtcaaaatagtctctg 12034494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 30537595 - 30537519
Alignment:
Q  1 tattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtagtattata 77  Q
    |||||||||||||||| |||| | |||||||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  30537595 tattttcaatgtatttccttgatcttgatgttttatgtcttttgtttcttgtataaaggaccggaggtagtagtata 30537519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 240 - 352
Target Start/End: Original strand, 46804755 - 46804867
Alignment:
Q  240 taatagccactttggtccttaaatgtgtaacaagtagtcacaacagtccttcaatgtatcaaaattttaaaatggtatctgattggacactctgttagtc 339  Q
    |||||| |||| ||||| || ||| |||||| || ||| |||| ||||| ||||||||||||||||||||||| || |||||||| ||||| ||||||||    
T  46804755 taatagtcactatggtctttgaatatgtaacgagcagtgacaatagtccctcaatgtatcaaaattttaaaatagtctctgattgtacactttgttagtc 46804854  T
Q  340 aaaatagtctctg 352  Q
    |||||||||||||    
T  46804855 aaaatagtctctg 46804867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 783022 - 783093
Alignment:
Q  1 tattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtagta 72  Q
    |||||||||||||||| |||||| |||||||||||||||||||||||||| |||||||||||||||| ||||    
T  783022 tattttcaatgtatttccttggtcttgatgttttatgtcttttgtttcttgtataaaggaccggagggagta 783093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 236 - 351
Target Start/End: Original strand, 17381280 - 17381395
Alignment:
Q  236 ggggtaatagccactttggtccttaaatgtgtaacaagtagtcacaacagtccttcaatgtatcaaaattttaaaatggtatctgattggacactctgtt 335  Q
    |||||||||| || |||||| | | |||||||| ||||||||||||| ||||||||||||||||||||||| ||||  || |||||| |  |||| ||||    
T  17381280 ggggtaatagtcattttggttcctgaatgtgtagcaagtagtcacaatagtccttcaatgtatcaaaatttcaaaaaagtctctgatagtccactttgtt 17381379  T
Q  336 agtcaaaatagtctct 351  Q
    ||||||||||||||||    
T  17381380 agtcaaaatagtctct 17381395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 43034094 - 43034023
Alignment:
Q  1 tattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtagta 72  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||    
T  43034094 tattttcaatgtaatttcttggtgttgatgttttatgttttttgtttcttgtataaaggaccggagggagta 43034023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 26877394 - 26877467
Alignment:
Q  1 tattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtagtatt 74  Q
    |||||||||||||||| |||||| |||||||||||| ||||||||||||| |||||||||||||||| ||||||    
T  26877394 tattttcaatgtatttccttggtcttgatgttttatatcttttgtttcttgtataaaggaccggagggagtatt 26877467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 237 - 352
Target Start/End: Original strand, 4161619 - 4161734
Alignment:
Q  237 gggtaatagccactttggtccttaaatgtgtaacaagtagtcacaacagtccttcaatgtatcaaaattttaaaatggtatctgattggacactctgtta 336  Q
    ||||||||| |||||| ||||  ||||||||||  ||||||||||| ||||||||||||||||||||||| ||||| ||   |||||  ||| ||||||     
T  4161619 gggtaatagtcactttcgtccccaaatgtgtaatgagtagtcacaatagtccttcaatgtatcaaaatttcaaaatagtccttgattatacattctgttg 4161718  T
Q  337 gtcaaaatagtctctg 352  Q
    ||||||||||||||||    
T  4161719 gtcaaaatagtctctg 4161734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 3067955 - 3068026
Alignment:
Q  1 tattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtagta 72  Q
    |||||||||||||||| |||| | ||||||||||||||||||||||| || |||||||||||||||| ||||    
T  3067955 tattttcaatgtatttccttgatcttgatgttttatgtcttttgtttattgtataaaggaccggagggagta 3068026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 247 - 348
Target Start/End: Complemental strand, 17381649 - 17381548
Alignment:
Q  247 cactttggtccttaaatgtgtaacaagtagtcacaacagtccttcaatgtatcaaaattttaaaatggtatctgattggacactctgttagtcaaaatag 346  Q
    ||||||||||| | |||| ||||||||||||||||| ||||| ||||||||||||||||  ||||| ||  |||||||  |||| ||||| |||||||||    
T  17381649 cactttggtccctgaatgagtaacaagtagtcacaatagtccctcaatgtatcaaaattccaaaatagtccctgattgtgcactttgttaatcaaaatag 17381550  T
Q  347 tc 348  Q
    ||    
T  17381549 tc 17381548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 237 - 346
Target Start/End: Complemental strand, 35255572 - 35255463
Alignment:
Q  237 gggtaatagccactttggtccttaaatgtgtaacaagtagtcacaacagtccttcaatgtatcaaaattttaaaatggtatctgattggacactctgtta 336  Q
    |||||||||  | |||||||| ||||| |||||| ||||||||||| ||||  ||||||||| ||||||||||||| ||||||||||   |||| | |||    
T  35255572 gggtaatagttattttggtccctaaatatgtaacgagtagtcacaatagtctctcaatgtattaaaattttaaaatagtatctgattttgcactttatta 35255473  T
Q  337 gtcaaaatag 346  Q
    ||||||||||    
T  35255472 gtcaaaatag 35255463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 22651817 - 22651745
Alignment:
Q  1 tattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtagtat 73  Q
    ||||||||||||||||  ||||| | |||||||||||||||||||||||| |||||||||| ||||| |||||    
T  22651817 tattttcaatgtatttctttggtctcgatgttttatgtcttttgtttcttgtataaaggactggagggagtat 22651745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 251 - 324
Target Start/End: Original strand, 24806482 - 24806555
Alignment:
Q  251 ttggtccttaaatgtgtaacaagtagtcacaacagtccttcaatgtatcaaaattttaaaatggtatctgattg 324  Q
    ||||||| ||||||| |||||| ||||||  | ||||||||||||||| ||||||||||||| |||||||||||    
T  24806482 ttggtccctaaatgtataacaaatagtcattatagtccttcaatgtattaaaattttaaaatagtatctgattg 24806555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 25934575 - 25934647
Alignment:
Q  1 tattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtagtat 73  Q
    ||||||||||||||||  || || |||||||||||||||||||||||||| ||||||||| | |||| |||||    
T  25934575 tattttcaatgtatttctttagtcttgatgttttatgtcttttgtttcttgtataaaggatcagaggaagtat 25934647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 236 - 312
Target Start/End: Complemental strand, 30316112 - 30316036
Alignment:
Q  236 ggggtaatagccactttggtccttaaatgtgtaacaagtagtcacaacagtccttcaatgtatcaaaattttaaaat 312  Q
    |||||||||| ||  ||||||| | ||||| ||| |||||||||||| |||||||||||||||||||||||| ||||    
T  30316112 ggggtaatagtcatattggtccctgaatgtataataagtagtcacaaaagtccttcaatgtatcaaaattttgaaat 30316036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 27627981 - 27628052
Alignment:
Q  1 tattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtagta 72  Q
    |||||||||||||||| |||| |  ||||||||||||||||||||||||| ||||||| |||| ||| ||||    
T  27627981 tattttcaatgtatttccttgatcctgatgttttatgtcttttgtttcttgtataaagaaccgaagggagta 27628052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 261 - 351
Target Start/End: Complemental strand, 4215252 - 4215162
Alignment:
Q  261 aatgtgtaacaagtagtcacaacagtccttcaatgtatcaaaattttaaaatggtatctgattggacactctgttagtcaaaatagtctct 351  Q
    |||||||||| ||||||| ||| ||||| |||||| |||||||||||||||| || || |||||  ||||  |||| ||||||||||||||    
T  4215252 aatgtgtaacgagtagtcgcaatagtccctcaatgaatcaaaattttaaaatagtctcggattgtgcacttcgttaatcaaaatagtctct 4215162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 261 - 347
Target Start/End: Complemental strand, 13834594 - 13834508
Alignment:
Q  261 aatgtgtaacaagtagtcacaacagtccttcaatgtatcaaaattttaaaatggtatctgattggacactctgttagtcaaaatagt 347  Q
    |||||||||  |||||||||||||||| || ||||||| ||||||||||||| || |||||||  |||||   ||||||||||||||    
T  13834594 aatgtgtaatgagtagtcacaacagtcttttaatgtattaaaattttaaaatagtctctgattttacacttcattagtcaaaatagt 13834508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 261 - 347
Target Start/End: Original strand, 45615623 - 45615709
Alignment:
Q  261 aatgtgtaacaagtagtcacaacagtccttcaatgtatcaaaattttaaaatggtatctgattggacactctgttagtcaaaatagt 347  Q
    |||||||||  | |||||||||||||| |||||||||| ||||||||||||| || |||||||   |||| | ||||||||||||||    
T  45615623 aatgtgtaattaatagtcacaacagtctttcaatgtattaaaattttaaaatagtctctgattttgcactttattagtcaaaatagt 45615709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 265 - 347
Target Start/End: Complemental strand, 51226188 - 51226106
Alignment:
Q  265 tgtaacaagtagtcacaacagtccttcaatgtatcaaaattttaaaatggtatctgattggacactctgttagtcaaaatagt 347  Q
    |||||||||| ||||||| |||| ||||||||||| ||||| |||||| ||   ||||||  |||||||||||||||||||||    
T  51226188 tgtaacaagttgtcacaatagtctttcaatgtatcgaaattctaaaattgttcttgattgtgcactctgttagtcaaaatagt 51226106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 247 - 348
Target Start/End: Complemental strand, 14810541 - 14810440
Alignment:
Q  247 cactttggtccttaaatgtgtaacaagtagtcacaacagtccttcaatgtatcaaaattttaaaatggtatctgattggacactctgttagtcaaaatag 346  Q
    ||||||||||||| | ||| || ||||||||||||| |||||||| | |||||||||||| ||||| ||   ||||||  |||| | |||||||||||||    
T  14810541 cactttggtccttgagtgtatagcaagtagtcacaatagtccttcgacgtatcaaaatttcaaaatagttcttgattgtccactttattagtcaaaatag 14810442  T
Q  347 tc 348  Q
    ||    
T  14810441 tc 14810440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 265 - 349
Target Start/End: Original strand, 971870 - 971954
Alignment:
Q  265 tgtaacaagtagtcacaacagtccttcaatgtatcaaaattttaaaatggtatctgattggacactctgttagtcaaaatagtct 349  Q
    |||||| ||| ||||||| |||| |||||||||||||||||| ||||| || | ||||||  |||| ||||||||||| ||||||    
T  971870 tgtaacgagttgtcacaatagtcattcaatgtatcaaaatttcaaaatagtctttgattgtgcactttgttagtcaaagtagtct 971954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 236 - 348
Target Start/End: Complemental strand, 11840144 - 11840032
Alignment:
Q  236 ggggtaatagccactttggtccttaaatgtgtaacaagtagtcacaacagtccttcaatgtatcaaaattttaaaatggtatctgattggacactctgtt 335  Q
    |||||||||| || |||||||| | |||| ||||  ||||||| ||| || || ||||||||||||||||| ||||| ||  |||||||  |||| ||||    
T  11840144 ggggtaatagtcattttggtccctgaatgcgtaaggagtagtcgcaataggccctcaatgtatcaaaatttcaaaatagtccctgattgtgcactttgtt 11840045  T
Q  336 agtcaaaatagtc 348  Q
    | |||||||||||    
T  11840044 aatcaaaatagtc 11840032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 261 - 345
Target Start/End: Original strand, 27395439 - 27395523
Alignment:
Q  261 aatgtgtaacaagtagtcacaacagtccttcaatgtatcaaaattttaaaatggtatctgattggacactctgttagtcaaaata 345  Q
    ||||||||| ||||||| |||||| | ||||||| |||||||||||||||||  ||| ||||||  ||||  |||||||||||||    
T  27395439 aatgtgtaataagtagttacaacaattcttcaatatatcaaaattttaaaataatatttgattgttcacttcgttagtcaaaata 27395523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 250 - 346
Target Start/End: Complemental strand, 56095297 - 56095201
Alignment:
Q  250 tttggtccttaaatgtgtaacaagtagtcacaacagtccttcaatgtatcaaaattttaaaatggtatctgattggacactctgttagtcaaaatag 346  Q
    |||||||| | |||||||||| ||||||||||| |||   ||| ||||| ||||||||||||| || |||||||   |||| |||||||||||||||    
T  56095297 tttggtcccttaatgtgtaacgagtagtcacaatagtatctcattgtattaaaattttaaaattgtctctgattttgcactttgttagtcaaaatag 56095201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 265 - 348
Target Start/End: Complemental strand, 924894 - 924811
Alignment:
Q  265 tgtaacaagtagtcacaacagtccttcaatgtatcaaaattttaaaatggtatctgattggacactctgttagtcaaaatagtc 348  Q
    |||||| |||||| | || |||| ||||||||| |||||||||||||| ||||||||||   || | |||||||||||||||||    
T  924894 tgtaacgagtagtaataatagtctttcaatgtagcaaaattttaaaatagtatctgattatgcattatgttagtcaaaatagtc 924811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 50150282 - 50150212
Alignment:
Q  1 tattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtagta 72  Q
    |||||||||||||||||||| || || || ||||| |||||||||||||| ||||||||| |||||| ||||    
T  50150282 tattttcaatgtattttcttagttttaatatttta-gtcttttgtttcttgtataaaggagcggaggaagta 50150212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 250 - 343
Target Start/End: Original strand, 12922176 - 12922269
Alignment:
Q  250 tttggtccttaaatgtgtaacaagtagtcacaacagtccttcaatgtatcaaaattttaaaatggtatctgattggacactctgttagtcaaaa 343  Q
    |||||||| | ||||||||| |||||||||||| |||  ||||||||||| |||||| ||||| || | ||||||  |||  ||||||||||||    
T  12922176 tttggtccctgaatgtgtaataagtagtcacaatagtatttcaatgtatcgaaatttcaaaatagtttttgattgtgcacgatgttagtcaaaa 12922269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 312
Target Start/End: Original strand, 29223115 - 29223187
Alignment:
Q  240 taatagccactttggtccttaaatgtgtaacaagtagtcacaacagtccttcaatgtatcaaaattttaaaat 312  Q
    |||||| ||||||||| |||||| ||||||  ||||||||||| | | ||||||||||| ||||||| |||||    
T  29223115 taatagtcactttggtgcttaaacgtgtaatgagtagtcacaataattcttcaatgtataaaaatttcaaaat 29223187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 307
Target Start/End: Complemental strand, 46433688 - 46433620
Alignment:
Q  239 gtaatagccactttggtccttaaatgtgtaacaagtagtcacaacagtccttcaatgtatcaaaatttt 307  Q
    ||||||| || |||||||| ||| ||| |||| ||| |||||||  |||||||||||||||||||||||    
T  46433688 gtaatagtcattttggtccataattgtttaacgagtggtcacaattgtccttcaatgtatcaaaatttt 46433620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 236 - 323
Target Start/End: Complemental strand, 8171071 - 8170984
Alignment:
Q  236 ggggtaatagccactttggtccttaaatgtgtaacaagtagtcacaacagtccttcaatgtatcaaaattttaaaatggtatctgatt 323  Q
    ||||||| || ||||||||||| |  ||||||||  |||||||| || ||||| ||||||||| ||||||| ||||| || |||||||    
T  8171071 ggggtaacagtcactttggtccctggatgtgtaatgagtagtcataatagtccctcaatgtataaaaatttcaaaatagtctctgatt 8170984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 250 - 349
Target Start/End: Original strand, 13834337 - 13834436
Alignment:
Q  250 tttggtccttaaatgtgtaacaagtagtcacaacagtccttcaatgtatcaaaattttaaaatggtatctgattggacactctgttagtcaaaatagtct 349  Q
    |||||||| | |||||||||  ||||  || || ||||| ||||| ||||||||||||||||| ||   ||||||  |||| ||||||||||||||||||    
T  13834337 tttggtccctgaatgtgtaaggagtaaccataatagtccctcaatttatcaaaattttaaaatagtccttgattgtgcactttgttagtcaaaatagtct 13834436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 284 - 347
Target Start/End: Complemental strand, 32934202 - 32934139
Alignment:
Q  284 agtccttcaatgtatcaaaattttaaaatggtatctgattggacactctgttagtcaaaatagt 347  Q
    ||||| ||||||||||||||||||||||| || | ||||||  |||| || |||||||||||||    
T  32934202 agtccctcaatgtatcaaaattttaaaatagtttttgattgtgcactttgctagtcaaaatagt 32934139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 261 - 352
Target Start/End: Original strand, 35763079 - 35763170
Alignment:
Q  261 aatgtgtaacaagtagtcacaacagtccttcaatgtatcaaaattttaaaatggtatctgattggacactctgttagtcaaaatagtctctg 352  Q
    |||||||||| ||||||||||| |||| |  || |||||||||||  ||||| ||||| ||||   |||| ||||| |||||||||||||||    
T  35763079 aatgtgtaacgagtagtcacaatagtcatcgaacgtatcaaaattcaaaaatagtatcggattatgcactttgttaatcaaaatagtctctg 35763170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 261 - 324
Target Start/End: Complemental strand, 46805101 - 46805038
Alignment:
Q  261 aatgtgtaacaagtagtcacaacagtccttcaatgtatcaaaattttaaaatggtatctgattg 324  Q
    |||||||||| |||||||| || |||| |||||| ||| ||||||||||||| || ||||||||    
T  46805101 aatgtgtaacgagtagtcataatagtctttcaatatattaaaattttaaaattgtctctgattg 46805038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 289 - 351
Target Start/End: Original strand, 23716592 - 23716654
Alignment:
Q  289 ttcaatgtatcaaaattttaaaatggtatctgattggacactctgttagtcaaaatagtctct 351  Q
    |||||| |||| |||||||||||| || | ||||||  |||||||||||| ||||||||||||    
T  23716592 ttcaatttatcgaaattttaaaatagtttttgattgcgcactctgttagttaaaatagtctct 23716654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 312
Target Start/End: Original strand, 36218510 - 36218564
Alignment:
Q  258 ttaaatgtgtaacaagtagtcacaacagtccttcaatgtatcaaaattttaaaat 312  Q
    ||||||||||||||| |||| | || ||||| |||||||||||||| ||||||||    
T  36218510 ttaaatgtgtaacaaatagtaataatagtccatcaatgtatcaaaaatttaaaat 36218564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 312
Target Start/End: Complemental strand, 40407733 - 40407671
Alignment:
Q  250 tttggtccttaaatgtgtaacaagtagtcacaacagtccttcaatgtatcaaaattttaaaat 312  Q
    |||||||| | |||||||||  ||||  || || |||||||||||||||||||||||||||||    
T  40407733 tttggtccctgaatgtgtaaggagtaaccataatagtccttcaatgtatcaaaattttaaaat 40407671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 352
Target Start/End: Original strand, 8170706 - 8170811
Alignment:
Q  248 actttggtccttaaatgtgtaacaagtagtcacaacagtccttcaatgtatcaaaatttt-aaaatggtatctgattggacactctgttagtcaaaatag 346  Q
    |||||| ||||| |||||| ||  | |||||| || ||||| ||||| |||||||| ||| ||||| || | ||||||  |||| |||||||||||||||    
T  8170706 actttgatccttgaatgtggaatgattagtcataatagtccatcaatatatcaaaaatttcaaaatagtctttgattgtgcactttgttagtcaaaatag 8170805  T
Q  347 tctctg 352  Q
    ||||||    
T  8170806 tctctg 8170811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 312
Target Start/End: Complemental strand, 10462881 - 10462832
Alignment:
Q  263 tgtgtaacaagtagtcacaacagtccttcaatgtatcaaaattttaaaat 312  Q
    ||||||||||||||||| || |||| || |||||||||||||| ||||||    
T  10462881 tgtgtaacaagtagtcataatagtcatttaatgtatcaaaattgtaaaat 10462832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 312
Target Start/End: Original strand, 11839764 - 11839840
Alignment:
Q  236 ggggtaatagccactttggtccttaaatgtgtaacaagtagtcacaacagtccttcaatgtatcaaaattttaaaat 312  Q
    ||||||||||||| |||||||  | ||| |||||| ||||| ||||| ||||| ||||| |||| |||||| |||||    
T  11839764 ggggtaatagccattttggtctatgaatttgtaacgagtagccacaatagtccctcaatatatcgaaatttcaaaat 11839840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 348
Target Start/End: Complemental strand, 31903595 - 31903483
Alignment:
Q  236 ggggtaatagccactttggtccttaaatgtgtaacaagtagtcacaacagtccttcaatgtatcaaaattttaaaatggtatctgattggacactctgtt 335  Q
    |||||||| | || |||||||  | |||||||||| | |||| |||| ||||| |||| |||||||||||  ||||| || |||||| |  |||| ||||    
T  31903595 ggggtaatggtcattttggtctctgaatgtgtaacgaatagttacaatagtccctcaacgtatcaaaattccaaaatagtctctgatcgtgcactttgtt 31903496  T
Q  336 agtcaaaatagtc 348  Q
    | |||||||||||    
T  31903495 aatcaaaatagtc 31903483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 276 - 352
Target Start/End: Complemental strand, 40317834 - 40317758
Alignment:
Q  276 gtcacaacagtccttcaatgtatcaaaattttaaaatggtatctgattggacactctgttagtcaaaatagtctctg 352  Q
    ||||||| ||| | ||||||||| ||| ||||||||| ||   |||||| ||||| ||||| |||||||||||||||    
T  40317834 gtcacaatagttcatcaatgtataaaatttttaaaatagtccttgattgtacactttgttaatcaaaatagtctctg 40317758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 276 - 352
Target Start/End: Complemental strand, 40327908 - 40327832
Alignment:
Q  276 gtcacaacagtccttcaatgtatcaaaattttaaaatggtatctgattggacactctgttagtcaaaatagtctctg 352  Q
    ||||||| ||| | ||||||||| ||| ||||||||| ||   |||||| ||||| ||||| |||||||||||||||    
T  40327908 gtcacaatagttcatcaatgtataaaatttttaaaatagtccttgattgtacactttgttaatcaaaatagtctctg 40327832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 24337980 - 24337916
Alignment:
Q  1 tattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccgga 65  Q
    |||||||||||||||| ||||||  |||||||||||||||||| |||||| ||||||||||||||    
T  24337980 tattttcaatgtatttccttggtcctgatgttttatgtcttttatttcttgtataaaggaccgga 24337916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 1365875 - 1365939
Alignment:
Q  1 tattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggag 66  Q
    |||||||||||||||| ||||||  |||||||| |||||||||||||||| |||||||||||||||    
T  1365875 tattttcaatgtattt-cttggtcctgatgtttcatgtcttttgtttcttgtataaaggaccggag 1365939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 239 - 352
Target Start/End: Original strand, 10219536 - 10219649
Alignment:
Q  239 gtaatagccactttggtccttaaatgtgtaacaagtagtcacaacagtccttcaatgtatcaaaattttaaaatggtatctgattggacactctgttagt 338  Q
    ||||||| || |||||||| | |||||||||| ||||| ||||| ||||| | ||||| || |||||| ||||| ||  |||||||  |||| |||||||    
T  10219536 gtaatagtcattttggtccctgaatgtgtaacgagtagccacaatagtcccttaatgtgtcgaaatttcaaaatagttcctgattgtgcactttgttagt 10219635  T
Q  339 caaaatagtctctg 352  Q
    ||||||||||||||    
T  10219636 caaaatagtctctg 10219649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 237 - 352
Target Start/End: Complemental strand, 10067830 - 10067715
Alignment:
Q  237 gggtaatagccactttggtccttaaatgtgtaacaagtagtcacaacagtccttcaatgtatcaaaattttaaaatggtatctgattggacactctgtta 336  Q
    ||||||||| || ||| ||| || |||||||||||||||  ||||| ||||  |||||||||| |||||||||||| || ||||||||   | | |||||    
T  10067830 gggtaatagtcattttagtctttgaatgtgtaacaagtaaccacaatagtctctcaatgtatcgaaattttaaaatagtctctgattgtgtattttgtta 10067731  T
Q  337 gtcaaaatagtctctg 352  Q
     |||||||||||||||    
T  10067730 atcaaaatagtctctg 10067715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 237 - 348
Target Start/End: Complemental strand, 19264830 - 19264720
Alignment:
Q  237 gggtaatagccactttggtccttaaatgtgtaacaagtagtcacaacagtccttcaatgtatcaaaattttaaaatggtatctgattggacactctgtta 336  Q
    ||||||||| || ||  |||||| |||||||||| ||||||||||| ||||  | |||||||| |||||||||||| || |||||||   |||| |||||    
T  19264830 gggtaatagtcatttacgtccttgaatgtgtaacgagtagtcacaatagtctct-aatgtatcgaaattttaaaatagtctctgattatgcactatgtta 19264732  T
Q  337 gtcaaaatagtc 348  Q
    ||||||||||||    
T  19264731 gtcaaaatagtc 19264720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 7243380 - 7243319
Alignment:
Q  1 tattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggacc 62  Q
    ||||||||||||||||  |||||  |||| |||||||||||||||||||| |||||||||||    
T  7243380 tattttcaatgtatttctttggtcctgatattttatgtcttttgtttcttgtataaaggacc 7243319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 261 - 345
Target Start/End: Original strand, 34937450 - 34937534
Alignment:
Q  261 aatgtgtaacaagtagtcacaacagtccttcaatgtatcaaaattttaaaatggtatctgattggacactctgttagtcaaaata 345  Q
    |||||||||| ||||||||||| ||| |||||||||||| |||||| |||||  |||| |||||  ||||  |||||||||||||    
T  34937450 aatgtgtaacgagtagtcacaatagttcttcaatgtatccaaatttcaaaatattatccgattgtgcactaagttagtcaaaata 34937534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 237 - 312
Target Start/End: Original strand, 6524841 - 6524916
Alignment:
Q  237 gggtaatagccactttggtccttaaatgtgtaacaagtagtcacaacagtccttcaatgtatcaaaattttaaaat 312  Q
    |||||||||||| |||||||| | ||||||||| ||||||||| || ||||  ||||||||| |||||| ||||||    
T  6524841 gggtaatagccattttggtccatgaatgtgtaataagtagtcataatagtctctcaatgtattaaaattctaaaat 6524916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 242 - 349
Target Start/End: Complemental strand, 31142286 - 31142179
Alignment:
Q  242 atagccactttggtccttaaatgtgtaacaagtagtcacaacagtccttcaatgtatcaaaattttaaaatggtatctgattggacactctgttagtcaa 341  Q
    |||| ||| ||||||| |||||| ||||| | | |||| || |||| || ||| ||||||||||| ||||| || | |||||  ||||||||||||||||    
T  31142286 atagtcacgttggtccctaaatgcgtaacgaattgtcataatagtcttttaatatatcaaaatttcaaaatagtctttgattctacactctgttagtcaa 31142187  T
Q  342 aatagtct 349  Q
    ||||||||    
T  31142186 aatagtct 31142179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 236 - 305
Target Start/End: Original strand, 26368922 - 26368991
Alignment:
Q  236 ggggtaatagccactttggtccttaaatgtgtaacaagtagtcacaacagtccttcaatgtatcaaaatt 305  Q
    |||||||||| || |||| |||||||||||| ||| ||||| ||| | |||||||||||| |||||||||    
T  26368922 ggggtaatagtcattttgatccttaaatgtggaacgagtagccacgatagtccttcaatgcatcaaaatt 26368991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 352
Target Start/End: Complemental strand, 516102 - 515986
Alignment:
Q  236 ggggtaatagccactttggtccttaaatgtgtaacaagtagtcacaacagtccttcaatgtatcaaaattttaaaatggtatctgattggacactctgtt 335  Q
    |||||||||| || |||||||| | |||||||||| |||||||||||||||   |  ||||||| |||||  ||||| ||   ||||||  ||||  |||    
T  516102 ggggtaatagtcattttggtccctgaatgtgtaacgagtagtcacaacagtaacttgatgtatcgaaattccaaaatagtcaatgattgtgcacttcgtt 516003  T
Q  336 agtcaaaatagtctctg 352  Q
    |||||||||||||||||    
T  516002 agtcaaaatagtctctg 515986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 277 - 352
Target Start/End: Complemental strand, 27789263 - 27789188
Alignment:
Q  277 tcacaacagtccttcaatgtatcaaaattttaaaatggtatctgattggacactctgttagtcaaaatagtctctg 352  Q
    |||||| ||||| ||||||||||| |||| |||||| |||| |||||| | ||| ||||||| |||||| ||||||    
T  27789263 tcacaatagtccatcaatgtatcacaattctaaaatagtatttgattgtatactttgttagtgaaaataatctctg 27789188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 312
Target Start/End: Complemental strand, 13382525 - 13382467
Alignment:
Q  254 gtccttaaatgtgtaacaagtagtcacaacagtccttcaatgtatcaaaattttaaaat 312  Q
    |||||||||||| |||||| |||||  || ||||  |||||||||||||||||||||||    
T  13382525 gtccttaaatgtataacaaatagtcgtaatagtctgtcaatgtatcaaaattttaaaat 13382467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 345
Target Start/End: Original strand, 12278025 - 12278118
Alignment:
Q  252 tggtccttaaatgtgtaacaagtagtcacaacagtccttcaatgtatcaaaattttaaaatggtatctgattggacactctgttagtcaaaata 345  Q
    ||||||||| ||||||||||||||  |||  || |  |||||| |||| |||||||||||| || ||||| || |||||| |||||| ||||||    
T  12278025 tggtccttacatgtgtaacaagtaaccacggcattttttcaatttatctaaattttaaaatagtctctgactgtacactccgttagttaaaata 12278118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 347
Target Start/End: Original strand, 24084628 - 24084685
Alignment:
Q  290 tcaatgtatcaaaattttaaaatggtatctgattggacactctgttagtcaaaatagt 347  Q
    ||||||||||||||||||||||| |||| | | |  ||||| ||||||||||||||||    
T  24084628 tcaatgtatcaaaattttaaaatagtatttaaatatacactttgttagtcaaaatagt 24084685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 317
Target Start/End: Complemental strand, 24759721 - 24759672
Alignment:
Q  268 aacaagtagtcacaacagtccttcaatgtatcaaaattttaaaatggtat 317  Q
    ||||||||||| ||||| ||| |||||||||||||||| |||||| ||||    
T  24759721 aacaagtagtcgcaacaatccatcaatgtatcaaaattctaaaattgtat 24759672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 349
Target Start/End: Complemental strand, 25085139 - 25085082
Alignment:
Q  292 aatgtatcaaaattttaaaatggtatctgattggacactctgttagtcaaaatagtct 349  Q
    |||||||||||||||||||||  | | ||||||  |||| ||||||||||||||||||    
T  25085139 aatgtatcaaaattttaaaatactttttgattgtgcactttgttagtcaaaatagtct 25085082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 312
Target Start/End: Original strand, 29920450 - 29920491
Alignment:
Q  271 aagtagtcacaacagtccttcaatgtatcaaaattttaaaat 312  Q
    |||||||||||| | ||||||||||||||||||||| |||||    
T  29920450 aagtagtcacaataatccttcaatgtatcaaaatttcaaaat 29920491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 349
Target Start/End: Original strand, 7792033 - 7792121
Alignment:
Q  261 aatgtgtaacaagtagtcacaacagtccttcaatgtatcaaaattttaaaatggtatctgattggacactctgttagtcaaaatagtct 349  Q
    ||||||||| | || || |||| ||||| ||||||||||||||||| ||||| || | ||| || ||| | | ||||||||||||||||    
T  7792033 aatgtgtaagatgtcgtgacaatagtccctcaatgtatcaaaatttgaaaatagtttatgaatgtacaatttattagtcaaaatagtct 7792121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 312
Target Start/End: Original strand, 10067486 - 10067526
Alignment:
Q  272 agtagtcacaacagtccttcaatgtatcaaaattttaaaat 312  Q
    ||||||||||||| ||| |||||||||||||||| ||||||    
T  10067486 agtagtcacaacaatccctcaatgtatcaaaattctaaaat 10067526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 250 - 312
Target Start/End: Complemental strand, 20900 - 20838
Alignment:
Q  250 tttggtccttaaatgtgtaacaagtagtcacaacagtccttcaatgtatcaaaattttaaaat 312  Q
    |||||||| | |||||||| |||||||||| || ||||||||||| |||||||||||||||||    
T  20900 tttggtccctgaatgtgtagcaagtagtcaaaatagtccttcaatatatcaaaattttaaaat 20838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 247 - 348
Target Start/End: Original strand, 29187 - 29288
Alignment:
Q  247 cactttggtccttaaatgtgtaacaagtagtcacaacagtccttcaatgtatcaaaattttaaaatggtatctgattggacactctgttagtcaaaatag 346  Q
    ||||||||||||| | ||| || ||||||||||||| |||||||| | |||||||||||| ||||| ||   ||||||  |||| | |||||||||||||    
T  29187 cactttggtccttgagtgtatagcaagtagtcacaatagtccttcgacgtatcaaaatttcaaaatagttcttgattgtccactttattagtcaaaatag 29286  T
Q  347 tc 348  Q
    ||    
T  29287 tc 29288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 30639 - 30688
Alignment:
Q  1 tattttcaatgtattttcttggtgttgatgttttatgtcttttgtttctt 50  Q
    |||||||||||||||| || ||| |||||| |||||||||||||||||||    
T  30639 tattttcaatgtatttcctcggtcttgatgatttatgtcttttgtttctt 30688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 30790 - 30741
Alignment:
Q  1 tattttcaatgtattttcttggtgttgatgttttatgtcttttgtttctt 50  Q
    |||||||||| ||||| |||||| |||||| |||||||||||||||||||    
T  30790 tattttcaatttatttccttggtcttgatgatttatgtcttttgtttctt 30741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0329 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 261 - 312
Target Start/End: Original strand, 6217 - 6268
Alignment:
Q  261 aatgtgtaacaagtagtcacaacagtccttcaatgtatcaaaattttaaaat 312  Q
    |||||| ||| ||||||| ||| ||||| |||||||||||||||||||||||    
T  6217 aatgtgcaacgagtagtcccaatagtccatcaatgtatcaaaattttaaaat 6268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 347
Target Start/End: Complemental strand, 21942 - 21856
Alignment:
Q  261 aatgtgtaacaagtagtcacaacagtccttcaatgtatcaaaattttaaaatggtatctgattggacactctgttagtcaaaatagt 347  Q
    ||||| ||| |||||||||||| |||| |||||| ||||||||||  |||||  | ||||||||  |||| ||||||| ||||||||    
T  21942 aatgtttaagaagtagtcacaatagtctttcaatatatcaaaattcaaaaatattttctgattgtgcactttgttagtaaaaatagt 21856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 6934 - 7008
Alignment:
Q  1 tattttcaatgtattttcttggtgttgatgttttatgtcttttgtttcttttataaaggaccggaggtagtatta 75  Q
    |||||||||||||||| |||  | || |||||||||||||||||||||||  |||||| | |||| | |||||||    
T  6934 tattttcaatgtatttccttaatcttaatgttttatgtcttttgtttcttgaataaagaatcggatggagtatta 7008  T

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Target: scaffold0003 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 352
Target Start/End: Complemental strand, 329090 - 329030
Alignment:
Q  292 aatgtatcaaaattttaaaatggtatctgattggacactctgttagtcaaaatagtctctg 352  Q
    |||||||||||||| |||||| || |||||||  ||||| |||||||| ||||| ||||||    
T  329090 aatgtatcaaaattataaaatagtttctgattatacactttgttagtctaaatactctctg 329030  T

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