View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3307_low_19 (Length: 355)
Name: NF3307_low_19
Description: NF3307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3307_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 345
Target Start/End: Original strand, 179855 - 180200
Alignment:
| Q |
1 |
agattttcttgaagcttaacaacaccatacgatcctattttcaacaacatggccaccaacccttccaacaccaaatcatatcttattctaaatgcctcaa |
100 |
Q |
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||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
179855 |
agattttcttgaagcttaacagcaccataagatcctattttcaacaacatggccaccaacccttccaacaccaaatcatatcttattctaaatgcctcaa |
179954 |
T |
|
| Q |
101 |
tcaagttcaaattgtctcgcaaaaattttcgtgcttggaaacgtcaagtcactaccctgcttgctggtatcgaagt-atgggtcacatagacggaaccac |
199 |
Q |
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||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
179955 |
tcacgttcaaattgtctagcaaaaattttcgtgcttggaaacgtcaagtcactaccctgcttgctggtatcgaagttatgggtcacatagacggaaccac |
180054 |
T |
|
| Q |
200 |
accaattcaaacagaaactattatcaacaatggtgtctatgctcccaatcctgaatacacaaagtggttcactcttgatcagctaatcatcaatcttctt |
299 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
180055 |
accaattcaaacagaaactattatcaacaacggtgtctatgctcccaatcctgaatacacaaagtggttcactcttgatcagctaatcatcaatcttctt |
180154 |
T |
|
| Q |
300 |
ctctcctccatgacagaggctgacatcatctcctttgcttcctatg |
345 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
180155 |
ctctcctccatgacaaaggctgacatcatctcctttgcttcctatg |
180200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 345
Target Start/End: Original strand, 1700242 - 1700584
Alignment:
| Q |
1 |
agattttcttgaagcttaacaacaccatacgatcctattttcaacaacatggccaccaacccttccaacaccaaatcatatcttattctaaatgcctcaa |
100 |
Q |
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||||||||||||||||||||| ||| | |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
1700242 |
agattttcttgaagcttaacagcactacacgatcctattttcaaca---tggccaccaacccttccaacaccaaatcatctcttattctaaatgcctcaa |
1700338 |
T |
|
| Q |
101 |
tcaagttcaaattgtctcgcaaaaattttcgtgcttggaaacgtcaagtcactaccctgcttgctggtatcgaagt-atgggtcacatagacggaaccac |
199 |
Q |
| |
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||| ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
1700339 |
tcacgttcaaactgtctcgcaaaaatttccgtgcttggaaacgtcaagtcactaccctgcttgctggtatcgaagttatgggtcacatagacggaaccac |
1700438 |
T |
|
| Q |
200 |
accaattcaaacagaaactattatcaacaatggtgtctatgctcccaatcctgaatacacaaagtggttcactcttgatcagctaatcatcaatcttctt |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1700439 |
accaattcaaacagaaactattatcaacaacggtgtctctgctcccaatcctgattacacaaagtggttcactcttgatcagctaatcatcaatcttctt |
1700538 |
T |
|
| Q |
300 |
ctctcctccatgacagaggctgacatcatctcctttgcttcctatg |
345 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
1700539 |
ctctcctccatgacagaggctgacagcatctcctttgcttcctatg |
1700584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 253 - 345
Target Start/End: Original strand, 5399261 - 5399353
Alignment:
| Q |
253 |
aatacacaaagtggttcactcttgatcagctaatcatcaatcttcttctctcctccatgacagaggctgacatcatctcctttgcttcctatg |
345 |
Q |
| |
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|||||||||| ||||||||| ||||||| || ||||||||||||||| ||||||| |||||||| || |||| || || ||||| ||||||| |
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| T |
5399261 |
aatacacaaattggttcactattgatcaactcatcatcaatcttcttatctcctctatgacagaagcagacagtatatcatttgcctcctatg |
5399353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 345
Target Start/End: Original strand, 3540258 - 3540350
Alignment:
| Q |
253 |
aatacacaaagtggttcactcttgatcagctaatcatcaatcttcttctctcctccatgacagaggctgacatcatctcctttgcttcctatg |
345 |
Q |
| |
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|||||||||| ||||||||| |||| || || ||||||||||||||| |||||| |||||||| || |||| || || ||||| ||||||| |
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| T |
3540258 |
aatacacaaattggttcactattgaccaactcatcatcaatcttcttatctcctttatgacagaagcagacagtatatcatttgcctcctatg |
3540350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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