View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3307_low_20 (Length: 354)

Name: NF3307_low_20
Description: NF3307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3307_low_20
NF3307_low_20
[»] chr7 (12 HSPs)
chr7 (8-257)||(24989714-24989963)
chr7 (9-195)||(45062518-45062704)
chr7 (81-257)||(8417659-8417835)
chr7 (8-203)||(7568122-7568317)
chr7 (8-209)||(18674552-18674753)
chr7 (8-253)||(23319919-23320165)
chr7 (8-259)||(48394105-48394356)
chr7 (8-192)||(41850957-41851142)
chr7 (9-257)||(48390264-48390513)
chr7 (107-165)||(965166-965224)
chr7 (8-59)||(8417896-8417947)
chr7 (288-323)||(10189774-10189809)
[»] chr4 (14 HSPs)
chr4 (8-257)||(43034073-43034322)
chr4 (10-257)||(50150263-50150509)
chr4 (9-257)||(30537575-30537823)
chr4 (9-257)||(3067729-3067975)
chr4 (71-257)||(26877163-26877350)
chr4 (9-257)||(27627753-27628001)
chr4 (8-257)||(782793-783043)
chr4 (71-257)||(25934341-25934526)
chr4 (8-257)||(36187319-36187569)
chr4 (14-201)||(33313287-33313475)
chr4 (14-59)||(25934545-25934590)
chr4 (8-59)||(26877364-26877415)
chr4 (14-59)||(22651802-22651847)
chr4 (86-161)||(29989703-29989779)
[»] chr2 (19 HSPs)
chr2 (9-257)||(10448719-10448967)
chr2 (23-257)||(11964151-11964384)
chr2 (8-257)||(41435552-41435801)
chr2 (8-257)||(21345024-21345270)
chr2 (73-257)||(22066384-22066568)
chr2 (8-257)||(39778593-39778845)
chr2 (14-257)||(10728242-10728486)
chr2 (8-252)||(42993749-42993994)
chr2 (9-257)||(13693474-13693722)
chr2 (8-249)||(25186947-25187188)
chr2 (14-203)||(7105608-7105797)
chr2 (8-250)||(10700167-10700410)
chr2 (8-257)||(19926730-19926978)
chr2 (74-252)||(36191585-36191763)
chr2 (14-257)||(28830958-28831201)
chr2 (119-258)||(41462665-41462805)
chr2 (13-47)||(22066346-22066380)
chr2 (8-47)||(36191517-36191556)
chr2 (71-132)||(16621981-16622042)
[»] chr3 (16 HSPs)
chr3 (8-259)||(54747989-54748240)
chr3 (8-257)||(26848103-26848352)
chr3 (8-257)||(25095945-25096179)
chr3 (8-257)||(35612961-35613212)
chr3 (14-257)||(46320434-46320678)
chr3 (14-257)||(50834007-50834251)
chr3 (14-257)||(50841602-50841846)
chr3 (67-255)||(25313366-25313555)
chr3 (14-203)||(48905583-48905772)
chr3 (71-257)||(23026292-23026479)
chr3 (14-257)||(22515639-22515885)
chr3 (8-203)||(9663849-9664041)
chr3 (22-255)||(49794914-49795149)
chr3 (14-241)||(20922722-20922951)
chr3 (85-161)||(33280340-33280416)
chr3 (14-47)||(23026233-23026266)
[»] chr8 (11 HSPs)
chr8 (8-258)||(13882085-13882334)
chr8 (8-257)||(8669735-8669983)
chr8 (8-248)||(29226286-29226525)
chr8 (9-251)||(37533773-37534016)
chr8 (14-257)||(32305708-32305952)
chr8 (8-252)||(8106899-8107143)
chr8 (14-250)||(35634740-35634977)
chr8 (14-206)||(42569953-42570148)
chr8 (8-59)||(45177546-45177598)
chr8 (85-173)||(36741715-36741806)
chr8 (73-208)||(17855397-17855533)
[»] chr1 (26 HSPs)
chr1 (8-257)||(1553717-1553966)
chr1 (25-257)||(27332899-27333131)
chr1 (8-257)||(30222693-30222942)
chr1 (9-257)||(45192517-45192765)
chr1 (9-243)||(35050249-35050483)
chr1 (8-257)||(27654606-27654854)
chr1 (9-257)||(16130456-16130707)
chr1 (8-257)||(5800381-5800629)
chr1 (71-257)||(16129970-16130157)
chr1 (8-257)||(40988011-40988261)
chr1 (77-254)||(9411731-9411909)
chr1 (8-176)||(27846417-27846586)
chr1 (14-206)||(36834287-36834474)
chr1 (9-143)||(35428415-35428553)
chr1 (71-259)||(34546648-34546834)
chr1 (8-257)||(4813694-4813945)
chr1 (79-257)||(13879068-13879235)
chr1 (8-173)||(23933261-23933427)
chr1 (136-257)||(35121171-35121292)
chr1 (288-336)||(19463929-19463977)
chr1 (9-163)||(11907973-11908125)
chr1 (13-104)||(35121301-35121392)
chr1 (9-47)||(16129902-16129940)
chr1 (187-250)||(35428357-35428420)
chr1 (256-285)||(19464018-19464047)
chr1 (8-45)||(34546862-34546899)
[»] chr5 (9 HSPs)
chr5 (67-259)||(21262900-21263092)
chr5 (8-257)||(33314329-33314578)
chr5 (16-258)||(40385185-40385431)
chr5 (10-257)||(24868467-24868715)
chr5 (9-255)||(41174604-41174851)
chr5 (9-254)||(3097491-3097741)
chr5 (71-174)||(4237936-4238039)
chr5 (8-59)||(21262545-21262596)
chr5 (82-209)||(2934905-2935034)
[»] chr6 (3 HSPs)
chr6 (14-257)||(1365645-1365890)
chr6 (14-250)||(7243365-7243602)
chr6 (8-257)||(24337959-24338205)
[»] scaffold0067 (1 HSPs)
scaffold0067 (14-257)||(6703-6949)
[»] scaffold0008 (1 HSPs)
scaffold0008 (8-257)||(258268-258509)
[»] scaffold0057 (2 HSPs)
scaffold0057 (14-173)||(30495-30654)
scaffold0057 (74-146)||(30839-30907)


Alignment Details
Target: chr7 (Bit Score: 176; Significance: 9e-95; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 8 - 257
Target Start/End: Complemental strand, 24989963 - 24989714
Alignment:
Q  8 ccaagaaaatacattgaaaatagtcatcttcatttaatacgcttctacatttnnnnnnnttctatgaatacccttaaattaattactctttattccatca 107  Q
    ||||||||||||||| |||||||||||||||||||||||| |||||||||||       |||||||||||||||||||||||||||||||||||||||||    
T  24989963 ccaagaaaatacatttaaaatagtcatcttcatttaatacacttctacatttaaaaaaattctatgaatacccttaaattaattactctttattccatca 24989864  T
Q  108 acttacttacttttaatattctctctcttaatcaataagagcacaaatgaaatttaacttcaaacataattaaaacttgatcaatcttcttataaaaagg 207  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||| || |||||||||||||||||| |||||||||    
T  24989863 acttacttacttttaatattctctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaatcttctaataaaaagg 24989764  T
Q  208 accnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagta 257  Q
    |||       ||||||||||||||||||||||||||||||||||||||||    
T  24989763 accaaaaaaattctcacttttgtttctaataaaaaggaccggagggagta 24989714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 9 - 195
Target Start/End: Complemental strand, 45062704 - 45062518
Alignment:
Q  9 caagaaaatacattgaaaatagtcatcttcatttaatacgcttctacatttnnnnnnnttctatgaatacccttaaattaattactctttattccatcaa 108  Q
    ||||||||||||||||||||||||||||||||||||||| ||| |||||||       |||||||||||||||||||||||||||| |||||||||||||    
T  45062704 caagaaaatacattgaaaatagtcatcttcatttaatacacttttacatttaaaaaaattctatgaatacccttaaattaattactttttattccatcaa 45062605  T
Q  109 cttacttacttttaatattctctctcttaatcaataagagcacaaatgaaatttaacttcaaacataattaaaacttgatcaatctt 195  Q
    |||||||||||||||||||||||||| ||||||| ||| ||||| |||||||||| ||| ||||||| || ||||||||||||||||    
T  45062604 cttacttacttttaatattctctctcataatcaacaagggcacagatgaaatttagctttaaacatatttgaaacttgatcaatctt 45062518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 81 - 257
Target Start/End: Complemental strand, 8417835 - 8417659
Alignment:
Q  81 ttaaattaattactctttattccatcaacttacttacttttaatattctctctcttaatcaataagagcacaaatgaaatttaacttcaaacataattaa 180  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||| |||||||||||||||| ||||||||||| || |    
T  8417835 ttaaattaattactctttattccatcaacttacttacttttaatattatctctcataattaataagggcacaaatgaaatttagcttcaaacatacttga 8417736  T
Q  181 aacttgatcaatcttcttataaaaaggaccnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagta 257  Q
    |||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||| ||||    
T  8417735 aacttgatcaatcttcttataaaaaggacaaaaaaaattctcacttttgtttctaataaaaaggaccggaggaagta 8417659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 8 - 203
Target Start/End: Original strand, 7568122 - 7568317
Alignment:
Q  8 ccaagaaaatacattgaaaatagtcatcttcatttaatacgcttctacatttnnnnnnnttctatgaatacccttaaattaattactctttattccatca 107  Q
    ||||| ||||||||||||||||||||||||||||||||||  ||||||||||       ||  |||||||||| ||||||||||||||||||||||| ||    
T  7568122 ccaaggaaatacattgaaaatagtcatcttcatttaatacatttctacatttaaaaaaatttcatgaatacccctaaattaattactctttattccacca 7568221  T
Q  108 acttacttacttttaatattctctctcttaatcaataagagcacaaatgaaatttaacttcaaacataattaaaacttgatcaatcttcttataaa 203  Q
    |||||||||||||||||||||||| || |||| |||||| |||||||||||||||| ||||||||||| || ||||||||||||||||||||||||    
T  7568222 acttacttacttttaatattctctttcataataaataagggcacaaatgaaatttaccttcaaacatacttgaaacttgatcaatcttcttataaa 7568317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 8 - 209
Target Start/End: Complemental strand, 18674753 - 18674552
Alignment:
Q  8 ccaagaaaatacattgaaaatagtcatcttcatttaatacgcttctacatttnnnnnnnttctatgaatacccttaaattaattactctttattccatca 107  Q
    ||||| |||||||||||| |||||||||||||||||||||  ||||||||||       ||  |||||||||| ||||||||||||||||||||||| ||    
T  18674753 ccaaggaaatacattgaatatagtcatcttcatttaatacatttctacatttaaaaaaatttcatgaatacccctaaattaattactctttattccacca 18674654  T
Q  108 acttacttacttttaatattctctctcttaatcaataagagcacaaatgaaatttaacttcaaacataattaaaacttgatcaatcttcttataaaaagg 207  Q
    ||||||||| ||| ||||||||||||  |||| |||||| |||||||||||||||| ||||||||||| || ||||||| ||||| ||||||||||||||    
T  18674653 acttacttattttcaatattctctcttataataaataagggcacaaatgaaatttagcttcaaacatacttgaaacttggtcaattttcttataaaaagg 18674554  T
Q  208 ac 209  Q
    ||    
T  18674553 ac 18674552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 8 - 253
Target Start/End: Original strand, 23319919 - 23320165
Alignment:
Q  8 ccaagaaaatacattgaaaatagtcatcttcatttaatacgcttctacatttnnnnnnnttctatgaatacccttaaattaattactctttattccatca 107  Q
    ||||| || ||||||||||||||| |||||| |||||||| | |||||||||       ||| |||||||||| ||||||||||||||||||||||| ||    
T  23319919 ccaaggaattacattgaaaatagttatcttcgtttaatacacctctacatttaaaaaatttccatgaatacccctaaattaattactctttattccacca 23320018  T
Q  108 acttacttacttttaatattctctctcttaatcaataagagcacaaatgaaatttaacttcaaacataattaaaacttgatcaat-cttcttataaaaag 206  Q
    ||||||||||||||||||||||||||| |||| |||||| |||||||||||||||| ||||||||||| || ||||||| |||||  ||||||||||||     
T  23320019 acttacttacttttaatattctctctcataataaataagggcacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttcttataaaaat 23320118  T
Q  207 gaccnnnnnnnttctcacttttgtttctaataaaaaggaccggaggg 253  Q
    ||||        ||| | |||||||| |||||||||| |||||||||    
T  23320119 gaccaacaaaaatctaatttttgtttttaataaaaagtaccggaggg 23320165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 8 - 259
Target Start/End: Original strand, 48394105 - 48394356
Alignment:
Q  8 ccaagaaaatacattgaaaatagtcatcttcatttaatacgcttctacatttnnnnnnnttct--atgaatacccttaaattaattactctttattccat 105  Q
    ||||| |||||||||||||||| | ||||||||||||||| | ||||| |||       ||||  | |||||||| |||||||||||||||||||||||     
T  48394105 ccaaggaaatacattgaaaatatttatcttcatttaatacacctctac-ttttttcttcttcttcaagaatacccctaaattaattactctttattccac 48394203  T
Q  106 caacttacttacttttaatattctctctcttaatcaataagagcacaaatgaaatttaacttcaaacataattaaaacttgatcaat-cttcttataaaa 204  Q
    |||||||||||||||||||||  ||| || |||| |||||| ||||||||||||||||  |||||||||| |||||||||| |||||  |||||||||||    
T  48394204 caacttacttacttttaatat--tctttcataataaataagggcacaaatgaaatttagtttcaaacatacttaaaacttggtcaatatttcttataaaa 48394301  T
Q  205 aggaccnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagtact 259  Q
    |||||           |||||||||||||||||||||||||||||||||||||||    
T  48394302 aggacaaaaaaaaaattcacttttgtttctaataaaaaggaccggagggagtact 48394356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 8 - 192
Target Start/End: Original strand, 41850957 - 41851142
Alignment:
Q  8 ccaagaaaatacattgaaaatagtcatcttcatttaatacgcttctacatttnnnnnnnttct-atgaatacccttaaattaattactctttattccatc 106  Q
    ||||| ||||||||||||||| || ||||||||||||||| | |||||||||       || | |||||||||| ||||||||||||||||||||||| |    
T  41850957 ccaaggaaatacattgaaaattgttatcttcatttaatacacctctacatttaaatttttttttatgaatacccctaaattaattactctttattccacc 41851056  T
Q  107 aacttacttacttttaatattctctctcttaatcaataagagcacaaatgaaatttaacttcaaacataattaaaacttgatcaat 192  Q
    |||| ||||||||||||||||||||||| |||| |||||| | ||||||||||||||  |||||||||| || ||||||| |||||    
T  41851057 aactcacttacttttaatattctctctcataataaataagggtacaaatgaaatttagtttcaaacatacttgaaacttggtcaat 41851142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 9 - 257
Target Start/End: Original strand, 48390264 - 48390513
Alignment:
Q  9 caagaaaatacattgaaaatagtcatcttcatttaatacgcttctacatttnnnnnnn-ttctatgaatacccttaaattaattactctttattccatca 107  Q
    |||| |||||||||||||||||| ||||| |||||||||   |||||||||        ||| |||||||||| ||||||||||| | |||||| |||||    
T  48390264 caaggaaatacattgaaaatagttatctt-atttaatacatctctacatttaaaaaatattccatgaatacccctaaattaattattttttatttcatca 48390362  T
Q  108 acttacttacttttaatattctctctcttaatcaataagagcacaaatgaaatttaacttcaaacataattaaaacttgatcaat-cttcttataaaaag 206  Q
    ||||||||||||||||||||||| ||| |||| ||||||  ||||||||||||||| ||||||||||| || ||||||| |||||  |||||||||||||    
T  48390363 acttacttacttttaatattctcactcataataaataaggacacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttcttataaaaag 48390462  T
Q  207 gaccnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagta 257  Q
    ||            |||||||||||||||||||||||||||||||| ||||    
T  48390463 gataaaaaaaaaattcacttttgtttctaataaaaaggaccggaggtagta 48390513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 107 - 165
Target Start/End: Original strand, 965166 - 965224
Alignment:
Q  107 aacttacttacttttaatattctctctcttaatcaataagagcacaaatgaaatttaac 165  Q
    ||||||||||||||||||||||| |||| |||| ||||||| |||||| ||||||||||    
T  965166 aacttacttacttttaatattctttctcataataaataagaacacaaacgaaatttaac 965224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 59
Target Start/End: Complemental strand, 8417947 - 8417896
Alignment:
Q  8 ccaagaaaatacattgaaaatagtcatcttcatttaatacgcttctacattt 59  Q
    ||||||||||||||| |||||| |||| |||||||||||| |||||||||||    
T  8417947 ccaagaaaatacattaaaaatattcatattcatttaatacacttctacattt 8417896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 288 - 323
Target Start/End: Original strand, 10189774 - 10189809
Alignment:
Q  288 atgtaatgaatgcttggtttggaaacaggttgaact 323  Q
    |||||||||| |||||||||||||||||||||||||    
T  10189774 atgtaatgaaagcttggtttggaaacaggttgaact 10189809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 176; Significance: 9e-95; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 8 - 257
Target Start/End: Original strand, 43034073 - 43034322
Alignment:
Q  8 ccaagaaaatacattgaaaatagtcatcttcatttaatacgcttctacatttnnnnnnnttctatgaatacccttaaattaattactctttattccatca 107  Q
    |||||||| ||||||||||||||||||||||||||||||| |||||||||||       |||||||||||||||||||||||||||||||||||||||||    
T  43034073 ccaagaaattacattgaaaatagtcatcttcatttaatacacttctacatttaaaataattctatgaatacccttaaattaattactctttattccatca 43034172  T
Q  108 acttacttacttttaatattctctctcttaatcaataagagcacaaatgaaatttaacttcaaacataattaaaacttgatcaatcttcttataaaaagg 207  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||    
T  43034173 acttacttacttttaatattctctctcataatcaataagggcacaaatgaaatttagcttcaaacatatttgaaacttgatcaatcttcttataaaaagg 43034272  T
Q  208 accnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagta 257  Q
    |||       ||||||||||||||||||||||||||||||||||| ||||    
T  43034273 accaaaaaaattctcacttttgtttctaataaaaaggaccggaggtagta 43034322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 10 - 257
Target Start/End: Original strand, 50150263 - 50150509
Alignment:
Q  10 aagaaaatacattgaaaatagtcatcttcatttaatacgcttctacatttnnnnnnnttctatgaatacccttaaattaattactctttattccatcaac 109  Q
    |||||||||||||||||||| |||||||||||||||| ||||||||||||       | ||| |||||||||||||||||||||| ||||||||||||||    
T  50150263 aagaaaatacattgaaaataatcatcttcatttaatatgcttctacatttaaaaaact-ctaggaatacccttaaattaattactttttattccatcaac 50150361  T
Q  110 ttacttacttttaatattctctctcttaatcaataagagcacaaatgaaatttaacttcaaacataattaaaacttgatcaatcttcttataaaaaggac 209  Q
    ||||||||||||||||||||||||| |||||||||||  ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  50150362 ttacttacttttaatattctctctcataatcaataaggacacaaatgaaatttagcttcaaacatacttaaaacttgatcaatcttcttataaaaaggac 50150461  T
Q  210 cnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagta 257  Q
    |       ||||| ||||||||||||||||||||||||||||||||||    
T  50150462 caaaaaaattctcccttttgtttctaataaaaaggaccggagggagta 50150509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 9 - 257
Target Start/End: Original strand, 30537575 - 30537823
Alignment:
Q  9 caagaaaatacattgaaaatagtcatcttcatttaatacgcttctacatttnnnnnnnttctatgaatacccttaaattaattactctttattccatcaa 108  Q
    |||| ||||||||||||||||||||||||||||||||||  ||||||||||       ||  |||||||||| ||||||||||||||||||||||| |||    
T  30537575 caaggaaatacattgaaaatagtcatcttcatttaatacatttctacatttaaaaatttttcatgaatacccctaaattaattactctttattccaccaa 30537674  T
Q  109 cttacttacttttaatattctctctcttaatcaataagagcacaaatgaaatttaacttcaaacataattaaaacttgatcaatcttcttataaaaagga 208  Q
    |||||||||||||||||||||||||| |||| |||||| |||||||||||||||| ||||||||||| || ||||||| |||||||||||||||||||||    
T  30537675 cttacttacttttaatattctctctcataataaataagggcacaaatgaaatttagcttcaaacatacttgaaacttggtcaatcttcttataaaaagga 30537774  T
Q  209 ccnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagta 257  Q
    |         |||||||||||||||||| |||||||| |||||||||||    
T  30537775 caaaaaaaaatctcacttttgtttctaacaaaaaggatcggagggagta 30537823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 9 - 257
Target Start/End: Complemental strand, 3067975 - 3067729
Alignment:
Q  9 caagaaaatacattgaaaatagtcatcttcatttaatacgcttctacatttnnnnnnnttctatgaatacccttaaattaattactctttattccatcaa 108  Q
    |||| |||||||||||||||||||||||||||||||||| |||||||||||       ||| |||||||||  ||||||||||  ||||||||| |  ||    
T  3067975 caaggaaatacattgaaaatagtcatcttcatttaatacacttctacatttagaaaaattc-atgaatacctctaaattaattcttctttattctactaa 3067877  T
Q  109 cttacttacttttaatattctctctcttaatcaataagagcacaaatgaaatttaacttcaaacataattaaaacttgatcaatcttcttataaaaagga 208  Q
    |||| ||||||||||| ||||||||| |||| |||||| |||||||||||||||| ||||||||||| || ||||||| |||||||||||||||||||||    
T  3067876 cttatttacttttaattttctctctcataataaataagggcacaaatgaaatttagcttcaaacatacttgaaacttggtcaatcttcttataaaaagga 3067777  T
Q  209 ccnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagta 257  Q
    |        ||||||||||| ||||||||||||||||||||| ||||||    
T  3067776 caaaaaaaattctcactttt-tttctaataaaaaggaccggatggagta 3067729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 71 - 257
Target Start/End: Complemental strand, 26877350 - 26877163
Alignment:
Q  71 atgaatacccttaaattaattactctttattccatcaacttacttacttttaatattctctctcttaatcaataagagcacaaatgaaatttaacttcaa 170  Q
    |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||| ||||||  ||||||||||||||| ||||||    
T  26877350 atgaatacccctaaattaattactctttattccaccaacttacttacttttaatattctatctcataataaataaggacacaaatgaaatttagcttcaa 26877251  T
Q  171 acataattaaaacttgatcaat-cttcttataaaaaggaccnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagta 257  Q
    ||||| |||||| ||| |||||  |||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||    
T  26877250 acatacttaaaatttggtcaatatttcttataaaaaggaccaaaaaaattctcacttttgtttctaataaaaaggaccggagggagta 26877163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 9 - 257
Target Start/End: Complemental strand, 27628001 - 27627753
Alignment:
Q  9 caagaaaatacattgaaaatagtcatcttcatttaatacgcttctacatttnnnnnnn-ttctatgaatacccttaaattaattactctttattccatca 107  Q
    |||| |||||||||||||||||| ||||||||||||||   ||||||||||        ||  |||||||||| ||||||||||||||||||||||| ||    
T  27628001 caaggaaatacattgaaaatagttatcttcatttaatatatttctacatttaaaaaaaattacatgaatacccctaaattaattactctttattccacca 27627902  T
Q  108 acttacttacttttaatattctctctcttaatcaataagagcacaaatgaaatttaacttcaaacataattaaaacttgatcaat-cttcttataaaaag 206  Q
    |||||||||||||||||||||  |||| |||| |||||| |||||||||||||||| ||||||||||| || ||||||| |||||  |||||||||||||    
T  27627901 acttacttacttttaatattc--tctcataataaataagggcacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttcttataaaaag 27627804  T
Q  207 gaccnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagta 257  Q
    || |       ||  ||||||||||||||||||||||||||||||||||||    
T  27627803 gatcaaaaaaatttccacttttgtttctaataaaaaggaccggagggagta 27627753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 8 - 257
Target Start/End: Complemental strand, 783043 - 782793
Alignment:
Q  8 ccaagaaaatacattgaaaatagtcatcttcatttaatacgcttctacatttnnnnnnn-ttctatgaatacccttaaattaattactctttattccatc 106  Q
    ||||| |||||||||||||||||| ||||| |||||||||   |||||||||        ||| |||||||||| ||||||||||| ||||||||||| |    
T  783043 ccaaggaaatacattgaaaatagttatctt-atttaatacatctctacatttaaaaaatattccatgaatacccctaaattaattattctttattccacc 782945  T
Q  107 aacttacttacttttaatattctctctcttaatcaataagagcacaaatgaaatttaacttcaaacataattaaaacttgatcaat-cttcttataaaaa 205  Q
    |||||||||||||||||||||||||||| |||| |||||| ||||||| |||||||| ||||||||||| || ||||||| |||||  ||||||||||||    
T  782944 aacttacttacttttaatattctctctcataataaataagggcacaaaagaaatttagcttcaaacatacttgaaacttggtcaatatttcttataaaaa 782845  T
Q  206 ggaccnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagta 257  Q
    ||||         | |||||||||||||||||||||||||||||||| ||||    
T  782844 ggacaaaaaaaaatatcacttttgtttctaataaaaaggaccggaggtagta 782793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 71 - 257
Target Start/End: Complemental strand, 25934526 - 25934341
Alignment:
Q  71 atgaatacccttaaattaattactctttattccatcaacttacttacttttaatattctctctcttaatcaataagagcacaaatgaaatttaacttcaa 170  Q
    ||||||||||| ||||||||| ||||||||||||  |||||| ||| ||||||| ||||||||| |||| |||||| |||||||||||||||| ||||||    
T  25934526 atgaataccct-aaattaattcctctttattccactaacttatttatttttaattttctctctcataataaataagggcacaaatgaaatttatcttcaa 25934428  T
Q  171 acataattaaaacttgatcaatcttcttataaaaaggaccnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagta 257  Q
    ||||| || ||||||| ||||||||||||||||||||||        |||||||||||||||||||||||||||||||||| |||||    
T  25934427 acatacttgaaacttggtcaatcttcttataaaaaggacaaaaaaaattctcacttttgtttctaataaaaaggaccggagagagta 25934341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 8 - 257
Target Start/End: Complemental strand, 36187569 - 36187319
Alignment:
Q  8 ccaagaaaatacattgaaaatagtcatcttcatttaatacgcttctacatttnnnnnnn-ttctatgaatacccttaaattaattactctttattccatc 106  Q
    |||||||||||||||||||||||| ||||| |||||||||   |||||||||        ||| |||||||||| ||||||||||| ||||||||||| |    
T  36187569 ccaagaaaatacattgaaaatagttatctt-atttaatacatctctacatttaaaaaatattccatgaatacccctaaattaattattctttattccacc 36187471  T
Q  107 aacttacttacttttaatattctctctcttaatcaataagagcacaaatgaaatttaacttcaaacataattaaaacttgatcaat-cttcttataaaaa 205  Q
    |||||||||||||||||||||||||||| |||| |||||| |||||||||||||||| ||||||| ||| || ||||||| | |||  ||||||||||||    
T  36187470 aacttacttacttttaatattctctctcataataaataagggcacaaatgaaatttagcttcaaatatacttgaaacttggttaatatttcttataaaaa 36187371  T
Q  206 ggaccnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagta 257  Q
    |||||          |||||||||||||||||||||||||||||||| ||||    
T  36187370 ggaccaaaaaaaaattcacttttgtttctaataaaaaggaccggaggtagta 36187319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 14 - 201
Target Start/End: Complemental strand, 33313475 - 33313287
Alignment:
Q  14 aaatacattgaaaatagtcatcttcatttaatacgcttctacatttnnnnnnn--ttctatgaatacccttaaattaattactctttattccatcaactt 111  Q
    ||||||||| |||||||||||||||||||||||| ||| || ||||         ||| ||||||| || ||||||||||  |||||||||||  |||||    
T  33313475 aaatacattaaaaatagtcatcttcatttaatacacttttatatttaaaaaaaaattc-atgaatatccataaattaattcatctttattccactaactt 33313377  T
Q  112 acttacttttaatattctctctcttaatcaataagagcacaaatgaaatttaacttcaaacataattaaaacttgatcaatcttcttata 201  Q
    | ||||||||||| ||||||||| |||| |||||| |||||||| |||||||  || ||||||| |||||||||| | ||||||||||||    
T  33313376 atttacttttaattttctctctcataataaataagggcacaaataaaatttatatttaaacatatttaaaacttggttaatcttcttata 33313287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 25934590 - 25934545
Alignment:
Q  14 aaatacattgaaaatagtcatcttcatttaatacgcttctacattt 59  Q
    |||||||||||||||||||||||||||||||||| |||||| ||||    
T  25934590 aaatacattgaaaatagtcatcttcatttaatacacttctatattt 25934545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 59
Target Start/End: Complemental strand, 26877415 - 26877364
Alignment:
Q  8 ccaagaaaatacattgaaaatagtcatcttcatttaatacgcttctacattt 59  Q
    ||||| |||||||||||||||||| ||||||| ||||||| | |||||||||    
T  26877415 ccaaggaaatacattgaaaatagttatcttcagttaatacacctctacattt 26877364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 22651802 - 22651847
Alignment:
Q  14 aaatacattgaaaatagtcatcttcatttaatacgcttctacattt 59  Q
    |||||||||||||||| |||||||| |||||||| |||||| ||||    
T  22651802 aaatacattgaaaataatcatcttcttttaatacacttctatattt 22651847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 86 - 161
Target Start/End: Complemental strand, 29989779 - 29989703
Alignment:
Q  86 ttaattactctttattccatcaacttacttacttttaatattctctctc-ttaatcaataagagcacaaatgaaatt 161  Q
    |||||||||||| |||| |  |||| ||||||||||||||||||||| |  |||| ||||||| ||||| |||||||    
T  29989779 ttaattactcttaattctaataactaacttacttttaatattctctcccagtaataaataagaacacaagtgaaatt 29989703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 175; Significance: 4e-94; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 9 - 257
Target Start/End: Complemental strand, 10448967 - 10448719
Alignment:
Q  9 caagaaaatacattgaaaatagtcatcttcatttaatacgcttctacatttnnnnnnnttctatgaatacccttaaattaattactctttattccatcaa 108  Q
    |||||||||| |||||||||||||||||||||||||||| |||||||||||       || ||||||||||||||||||||||||| |||||||||||||    
T  10448967 caagaaaatatattgaaaatagtcatcttcatttaatacacttctacatttaaaaaagttatatgaatacccttaaattaattactatttattccatcaa 10448868  T
Q  109 cttacttacttttaatattctctctcttaatcaataagagcacaaatgaaatttaacttcaaacataattaaaacttgatcaatcttcttataaaaagga 208  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| ||||    
T  10448867 cttacttacttttaatattctctctcataatcaataagagcacaaatgaaatttaacttcaaacatacttgaaacttgatcaatcttcttataaagagga 10448768  T
Q  209 ccnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagta 257  Q
    ||       ||||||||||||||||||||||||||||||||||||||||    
T  10448767 ccaaaaaaattctcacttttgtttctaataaaaaggaccggagggagta 10448719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 23 - 257
Target Start/End: Complemental strand, 11964384 - 11964151
Alignment:
Q  23 gaaaatagtcatcttcatttaatacgcttctacatttnnnnnnnttctatgaatacccttaaattaattactctttattccatcaacttacttactttta 122  Q
    ||||||||||||||||||||||||| |||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11964384 gaaaatagtcatcttcatttaatacacttctacatttaaaaaa-ttctatgaatacccttaaattaattactctttattccatcaacttacttactttta 11964286  T
Q  123 atattctctctcttaatcaataagagcacaaatgaaatttaacttcaaacataattaaaacttgatcaatcttcttataaaaaggaccnnnnnnnttctc 222  Q
    |||||||||||| ||||||||||| |||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||       |||||    
T  11964285 atattctctctcataatcaataagggcacaaatgaaatttagcttcaaacatatttgaaacttgatcaatcttcttataaaaaggaccaaaaaaattctc 11964186  T
Q  223 acttttgtttctaataaaaaggaccggagggagta 257  Q
    |||||||||||||||| ||||||||||||||||||    
T  11964185 acttttgtttctaatagaaaggaccggagggagta 11964151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 8 - 257
Target Start/End: Original strand, 41435552 - 41435801
Alignment:
Q  8 ccaagaaaatacattgaaaatagtcatcttcatttaatacgcttctacatttnnnnnnnttctatgaatacccttaaattaattactctttattccatca 107  Q
    |||||||||| ||||||||||||||||||||||||||||| |||||||||||       ||  ||||||||||||||||||||||||||||||| |||||    
T  41435552 ccaagaaaatgcattgaaaatagtcatcttcatttaatacacttctacatttaattttttttcatgaatacccttaaattaattactctttatttcatca 41435651  T
Q  108 acttacttacttttaatattctctctcttaatcaataagagcacaaatgaaatttaacttcaaacataattaaaacttgatcaatcttcttataaaaagg 207  Q
    ||||| |||||||||||||||| |||| ||||||||||| |||||||||||||||| ||||||||||| || |||||||||||||||| |||||||||||    
T  41435652 acttatttacttttaatattctatctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaatcttattataaaaagg 41435751  T
Q  208 accnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagta 257  Q
    |||       |||||||||||||||||||||||||||||||||| |||||    
T  41435752 accaaaaaaattctcacttttgtttctaataaaaaggaccggagcgagta 41435801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 8 - 257
Target Start/End: Original strand, 21345024 - 21345270
Alignment:
Q  8 ccaagaaaatacattgaaaatagtcatcttcatttaatacgcttctacatttnnnnnnnttctatgaatacccttaaattaattactctttattccatca 107  Q
    |||| ||||||||||||||||||||||||||||||| ||| |||||||||||       |||||| ||||||||||||||||||||||||||||||||||    
T  21345024 ccaaaaaaatacattgaaaatagtcatcttcatttattacacttctacatttaaaacaattctataaatacccttaaattaattactctttattccatca 21345123  T
Q  108 acttacttacttttaatattctctctcttaatcaataagagcacaaatgaaatttaacttcaaacataattaaaacttgatcaatcttcttataaaaagg 207  Q
    |||||||||||||||||  ||||||||  ||||||||||  ||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||    
T  21345124 acttacttacttttaat--tctctctcacaatcaataaggacacaaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttataaaaagg 21345221  T
Q  208 accnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagta 257  Q
    |||       ||||||||||||||||||||||||||||||||||| ||||    
T  21345222 acc-aaaaaattctcacttttgtttctaataaaaaggaccggaggaagta 21345270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 73 - 257
Target Start/End: Original strand, 22066384 - 22066568
Alignment:
Q  73 gaatacccttaaattaattactctttattccatcaacttacttacttttaatattctctctcttaatcaataagagcacaaatgaaatttaacttcaaac 172  Q
    |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||| ||||    
T  22066384 gaatacccttaaattaattactttttattccatcaactaacttacttttaatattctctctcataatcaataagggcacaaatgaaatttagctttaaac 22066483  T
Q  173 ataattaaaacttgatcaatcttcttataaaaaggaccnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagta 257  Q
    ||| || |||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||| |||||||||||    
T  22066484 atacttgaaacttgatcaatcttcttataaaaaggaccaaaaaaattctcacttttgtttctaataaaaaggatcggagggagta 22066568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 8 - 257
Target Start/End: Original strand, 39778593 - 39778845
Alignment:
Q  8 ccaagaaaatacattgaaaatagtcatcttcatttaatacgcttctacatttnnnnnnn--ttctatgaatacccttaaattaattactctttattccat 105  Q
    ||||| |||||||||||||||||| ||||||||||||||| | |||||||||         ||| ||||||||||||||||||||||||||||||||||     
T  39778593 ccaaggaaatacattgaaaatagttatcttcatttaatacacctctacatttaaaaaaaaattccatgaatacccttaaattaattactctttattccac 39778692  T
Q  106 caacttacttacttttaatattctctctcttaatcaataagagcacaaatgaaatttaacttcaaacataattaaaacttgatcaat-cttcttataaaa 204  Q
    ||||||||||||||||||||||||||||| |||| |||||| |||||||||||||||| ||||||||||| || ||||||| |||||  |||||||||||    
T  39778693 caacttacttacttttaatattctctctcataataaataagggcacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttcttataaaa 39778792  T
Q  205 aggaccnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagta 257  Q
    ||||||       || |||||||||||||||||||||| ||||||||||||||    
T  39778793 aggaccaaaaaaattttcacttttgtttctaataaaaaagaccggagggagta 39778845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 14 - 257
Target Start/End: Original strand, 10728242 - 10728486
Alignment:
Q  14 aaatacattgaaaatagtcatcttcatttaatacgcttctacatttnnnnnnnttctatgaatacccttaaattaattactctttattccatcaacttac 113  Q
    |||||||||||||||||| ||||||| ||||||| | |||||||||        |  |||||||||| ||||||||||||||||||||||| ||||||||    
T  10728242 aaatacattgaaaatagttatcttcagttaatacacctctacatttaaaaaaaattcatgaatacccctaaattaattactctttattccaccaacttac 10728341  T
Q  114 ttacttttaatattctctctcttaatcaataagagcacaaatgaaatttaacttcaaacataattaaaacttgatcaat-cttcttataaaaaggaccnn 212  Q
    ||||||||||||||||||||| |||| |||||| ||| |||||||||||| ||||||||||| || ||||||  |||||  |||||||||||||||||      
T  10728342 ttacttttaatattctctctcataataaataagggcataaatgaaatttagcttcaaacatacttgaaactttgtcaatatttcttataaaaaggaccaa 10728441  T
Q  213 nnnnnttctcacttttgtttctaataaaaaggaccggagggagta 257  Q
         ||||||||||||||||||||||||||||||||||||||||    
T  10728442 aaaaattctcacttttgtttctaataaaaaggaccggagggagta 10728486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 8 - 252
Target Start/End: Original strand, 42993749 - 42993994
Alignment:
Q  8 ccaagaaaatacattgaaaatagtcatcttcatttaatacgcttctacatttnnnnnnnttctatgaatacccttaaattaattactctttattccatca 107  Q
    ||||| |||||||||||||||||||||||||||||||||| |||||| ||||        || |||||||||| |||||||||| ||||||||||||  |    
T  42993749 ccaaggaaatacattgaaaatagtcatcttcatttaatacacttctatatttaaataaaatccatgaatacccctaaattaattcctctttattccacta 42993848  T
Q  108 acttacttacttttaatattctctctcttaatcaataagagcacaaatgaaatttaacttcaaacataattaaaacttgatcaatcttcttataaaaagg 207  Q
    ||||| ||||||||||| ||||||||| |||  |||||| |||||||||||||||| ||||||||||| || ||| ||| ||||||||||||||||||||    
T  42993849 acttatttacttttaattttctctctcataacaaataagggcacaaatgaaatttatcttcaaacatacttgaaatttggtcaatcttcttataaaaagg 42993948  T
Q  208 acc-nnnnnnnttctcacttttgtttctaataaaaaggaccggagg 252  Q
    |||        |||||||||||||||||||||||||||||||||||    
T  42993949 accaaaaaaaattctcacttttgtttctaataaaaaggaccggagg 42993994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 9 - 257
Target Start/End: Original strand, 13693474 - 13693722
Alignment:
Q  9 caagaaaatacattgaaaatagtcatcttcatttaatacgcttctacatttnnnnnnnttctatgaatacccttaaattaattactctttattccatcaa 108  Q
    |||| |||||||||||||||||||||||||||||||||| |||||| ||||        |  |||||||||| |||||||||| ||||||||||||  ||    
T  13693474 caaggaaatacattgaaaatagtcatcttcatttaatacacttctatatttaaaaaatattcatgaatacccctaaattaattcctctttattccactaa 13693573  T
Q  109 cttacttacttttaatattctctctcttaatcaataagagcacaaatgaaatttaacttcaaacataattaaaacttgatcaatcttcttataaaaagga 208  Q
    |||| ||||||||||| ||||||||| |||| ||||||  || |||||||||||| ||| ||||||| || ||||||| |||||||||||||||||||||    
T  13693574 cttatttacttttaattttctctctcataataaataaggacagaaatgaaatttatctttaaacatacttgaaacttggtcaatcttcttataaaaagga 13693673  T
Q  209 ccnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagta 257  Q
    ||       |||||||||||||||||||||||||||||||||| |||||    
T  13693674 ccaaaaaaattctcacttttgtttctaataaaaaggaccggagagagta 13693722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 8 - 249
Target Start/End: Complemental strand, 25187188 - 25186947
Alignment:
Q  8 ccaagaaaatacattgaaaatagtcatcttcatttaatacgcttctacatttnnnnnnnttctatgaatacccttaaattaattactctttattccatca 107  Q
    ||||| |||||||||||||||||| ||||||||||||||| | |||||||||       ||| ||||||| ||||||||||||||||||| |||||| ||    
T  25187188 ccaaggaaatacattgaaaatagttatcttcatttaatacacctctacatttaaaaaaattccatgaatatccttaaattaattactcttaattccacca 25187089  T
Q  108 acttacttacttttaatattctctctcttaatcaataagagcacaaatgaaatttaacttcaaacataattaaaacttgatcaat-cttcttataaaaag 206  Q
    ||||||||||||||||||||||||||| |||| |||||| |||||||||||||||| ||||| ||||| || ||||||| |||||  ||||||||||||     
T  25187088 acttacttacttttaatattctctctcataataaataagggcacaaatgaaatttagcttcagacatacttgaaacttggtcaatatttcttataaaaat 25186989  T
Q  207 gaccnnnnnnnttctcacttttgtttctaataaaaaggaccgg 249  Q
    ||||       || |||||||||||||||||||||||||||||    
T  25186988 gaccaaaaaaatt-tcacttttgtttctaataaaaaggaccgg 25186947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 14 - 203
Target Start/End: Complemental strand, 7105797 - 7105608
Alignment:
Q  14 aaatacattgaaaatagtcatcttcatttaatacgcttctacatttnnnnnnnttctatgaatacccttaaattaattactctttattccatcaacttac 113  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||       ||  |||||||||| ||||||||||||||||||||||| ||||||||    
T  7105797 aaatacattgaaaatagtcatcttcatttaatacatttctacatttaaatttttttcatgaatacccctaaattaattactctttattccaccaacttac 7105698  T
Q  114 ttacttttaatattctctctcttaatcaataagagcacaaatgaaatttaacttcaaacataattaaaacttgatcaatcttcttataaa 203  Q
    |||||||||||||| |||||| |||| |||||| |||||||||||||||| |||||| |||| || ||||||| ||||||||||||||||    
T  7105697 ttacttttaatattttctctcataataaataagggcacaaatgaaatttaccttcaagcatacttgaaacttggtcaatcttcttataaa 7105608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 8 - 250
Target Start/End: Original strand, 10700167 - 10700410
Alignment:
Q  8 ccaagaaaatacattgaaaatagtcatcttcatttaatacgcttctacatttnnnnnnnttctatgaatacccttaaattaattactctttattccatca 107  Q
    ||||| |||||||||||||||||| || |||||||||||| | |||||||||       ||| |||||||||| ||||||||||||||||||||||| ||    
T  10700167 ccaaggaaatacattgaaaatagttattttcatttaatacacctctacatttaaaaaaattccatgaatacccctaaattaattactctttattccacca 10700266  T
Q  108 acttacttacttttaatattctctctcttaatcaataagagcacaaatgaaatttaacttcaaacataattaaaacttgatcaat-cttcttataaaaag 206  Q
    ||||| ||||||||||||||||||||| |||| | |||| |||||||||||||||| ||||| ||||| || ||||||| |||||  ||||||||||||     
T  10700267 acttatttacttttaatattctctctcataataagtaagggcacaaatgaaatttagcttcagacatacttgaaacttggtcaatatttcttataaaaaa 10700366  T
Q  207 gaccnnnnnnnttctcacttttgtttctaataaaaaggaccgga 250  Q
    |||        |||||||||||||||||||||||||||| ||||    
T  10700367 gactaaaaaaattctcacttttgtttctaataaaaaggatcgga 10700410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 8 - 257
Target Start/End: Original strand, 19926730 - 19926978
Alignment:
Q  8 ccaagaaaatacattgaaaatagtcatcttcatttaatacgcttctacatttnnnnnnnttctatgaatacccttaaattaattactctttattccatca 107  Q
    ||||| |||||||||||||||| | ||||||||||||||| | ||||| |||        |  | |||||||| ||||||||||||||||||||||| ||    
T  19926730 ccaaggaaatacattgaaaatatttatcttcatttaatacacctctacttttttttcttcttcaagaatacccctaaattaattactctttattccacca 19926829  T
Q  108 acttacttacttttaatattctctctcttaatcaataagagcacaaatgaaatttaacttcaaacataattaaaacttgatcaat-cttcttataaaaag 206  Q
    |||||||||||||||||||  |||||| |||| |||||| ||||||||||||||||  |||||||||| |||||||||| |||||  |||||||||||||    
T  19926830 acttacttacttttaatat--tctctcataataaataagggcacaaatgaaatttagtttcaaacatacttaaaacttggtcaatatttcttataaaaag 19926927  T
Q  207 gaccnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagta 257  Q
    ||||        | |||||||||||||||||||||||||||||||||||||    
T  19926928 gaccaaaaaaaatttcacttttgtttctaataaaaaggaccggagggagta 19926978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 74 - 252
Target Start/End: Original strand, 36191585 - 36191763
Alignment:
Q  74 aatacccttaaattaattactctttattccatcaacttacttacttttaatattctctctcttaatcaataagagcacaaatgaaatttaacttcaaaca 173  Q
    ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||| |||||||||||||||| |||||||||    
T  36191585 aatacccctaaattaattactctttattcca-caacttacttacttttaatattctctctcataataaataagggcacaaatgaaatttagcttcaaaca 36191683  T
Q  174 taattaaaacttgatcaat-cttcttataaaaaggaccnnnnnnnttctcacttttgtttctaataaaaaggaccggagg 252  Q
    || || ||||||  |||||  |||||||||||||||||        ||||||||||||||||||||||||||||||||||    
T  36191684 tacttgaaacttagtcaatatttcttataaaaaggaccaaaaaaaatctcacttttgtttctaataaaaaggaccggagg 36191763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 14 - 257
Target Start/End: Complemental strand, 28831201 - 28830958
Alignment:
Q  14 aaatacattgaaaatagtcatcttcatttaatacgcttctacatttnnnnnnnttctatgaatacccttaaattaattactctttattccatcaacttac 113  Q
    |||||||||||||||||| ||||||||||||||| | ||||| |||        || |||||||||| |||||||||||||||||||| || ||| ||||    
T  28831201 aaatacattgaaaatagttatcttcatttaatacacctctacgttttaaaaaaatc-atgaatacccctaaattaattactctttattgcaccaatttac 28831103  T
Q  114 ttacttttaatattctctctcttaatcaataagagcacaaatgaaatttaacttcaaacataattaaaacttgatcaat-cttcttataaaaaggaccnn 212  Q
    |||||||||||||| |||||| |||| ||||||  ||||||||||||||||||||||||||| |||||| ||| |||||  |||||||||||||||||      
T  28831102 ttacttttaatattttctctcataataaataaggacacaaatgaaatttaacttcaaacatacttaaaatttggtcaatatttcttataaaaaggaccaa 28831003  T
Q  213 nnnnnttctcacttttgtttctaataaaaaggaccggagggagta 257  Q
         |||| |||||| |||||||||||| ||||| |||| ||||    
T  28831002 aaaaattcttacttttatttctaataaaatggaccagaggaagta 28830958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 119 - 258
Target Start/End: Complemental strand, 41462805 - 41462665
Alignment:
Q  119 tttaatattctctctcttaatcaataagagcacaaatgaaatttaacttcaaacataattaaaacttgatcaat-cttcttataaaaaggaccnnnnnnn 217  Q
    |||| ||||||||||| |||| |||||| |||||||||||||||||||||||||||| |||||||||| |||||  |||||||||||||||||           
T  41462805 tttattattctctctcataataaataagggcacaaatgaaatttaacttcaaacatatttaaaacttggtcaatatttcttataaaaaggacctaaaaaa 41462706  T
Q  218 ttctcacttttgtttctaataaaaaggaccggagggagtac 258  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  41462705 ttctcacttttgtttctaataaaaaggactggagggagtac 41462665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 47
Target Start/End: Original strand, 22066346 - 22066380
Alignment:
Q  13 aaaatacattgaaaatagtcatcttcatttaatac 47  Q
    |||||||||||||||||||||||||||||||||||    
T  22066346 aaaatacattgaaaatagtcatcttcatttaatac 22066380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 47
Target Start/End: Original strand, 36191517 - 36191556
Alignment:
Q  8 ccaagaaaatacattgaaaatagtcatcttcatttaatac 47  Q
    |||||||||||||||||||||||| ||||| |||||||||    
T  36191517 ccaagaaaatacattgaaaatagttatctttatttaatac 36191556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 132
Target Start/End: Original strand, 16621981 - 16622042
Alignment:
Q  71 atgaatacccttaaattaattactctttattccatcaacttacttacttttaatattctctc 132  Q
    |||||| ||| || |||||||||||||  ||| | ||||||||||| |||||||||||||||    
T  16621981 atgaatgcccctatattaattactcttatttctaccaacttacttatttttaatattctctc 16622042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 170; Significance: 4e-91; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 8 - 259
Target Start/End: Complemental strand, 54748240 - 54747989
Alignment:
Q  8 ccaagaaaatacattgaaaatagtcatcttcatttaatacgcttctacatttnnnnnnnttctatgaatacccttaaattaattactctttattccatca 107  Q
    |||||||||||| ||||||||||| ||||||||||||||| |||||||||||       || ||||||||||||||||||||||||||||||||||||||    
T  54748240 ccaagaaaatacgttgaaaatagttatcttcatttaatacacttctacatttaaaaaaattatatgaatacccttaaattaattactctttattccatca 54748141  T
Q  108 acttacttacttttaatattctctctcttaatcaataagagcacaaatgaaatttaacttcaaacataattaaaacttgatcaatcttcttataaaaagg 207  Q
    | ||||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||    
T  54748140 atttacttacttttaatattctctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttataaaaagg 54748041  T
Q  208 accnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagtact 259  Q
    |||       ||||||||||||||||||||||||||||||||||||||||||    
T  54748040 accaaaaaaattctcacttttgtttctaataaaaaggaccggagggagtact 54747989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 8 - 257
Target Start/End: Original strand, 26848103 - 26848352
Alignment:
Q  8 ccaagaaaatacattgaaaatagtcatcttcatttaatacgcttctacatttnnnnnnnttctatgaatacccttaaattaattactctttattccatca 107  Q
    |||| ||||||||||||||||||||||||||||||||||| |||||||| ||       ||||||||| |||||||||||||||||||||||||||||||    
T  26848103 ccaaaaaaatacattgaaaatagtcatcttcatttaatacacttctacagttaaaaaaattctatgaacacccttaaattaattactctttattccatca 26848202  T
Q  108 acttacttacttttaatattctctctcttaatcaataagagcacaaatgaaatttaacttcaaacataattaaaacttgatcaatcttcttataaaaagg 207  Q
    ||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||| ||||||||||| || |||||||||||||||||||||||||| |    
T  26848203 acttacttacttttaatattctctctcataatcaataagggcacaaaagaaatttagcttcaaacatacttgaaacttgatcaatcttcttataaaaatg 26848302  T
Q  208 accnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagta 257  Q
    |||       ||||||||||||||| ||||||||||||||||||||||||    
T  26848303 accaaaaaaattctcacttttgtttataataaaaaggaccggagggagta 26848352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 8 - 257
Target Start/End: Original strand, 25095945 - 25096179
Alignment:
Q  8 ccaagaaaatacattgaaaatagtcatcttcatttaatacgcttctacatttnnnnnnnttctatgaatacccttaaattaattactctttattccatca 107  Q
    ||||||||||||||||||||||||||||||||||||||||  |||||               ||||||||||||||||||||||||||||||||||||||    
T  25095945 ccaagaaaatacattgaaaatagtcatcttcatttaatacatttcta---------------tatgaatacccttaaattaattactctttattccatca 25096029  T
Q  108 acttacttacttttaatattctctctcttaatcaataagagcacaaatgaaatttaacttcaaacataattaaaacttgatcaatcttcttataaaaagg 207  Q
    | ||||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||| || ||| ||||||||||||||||||||||||    
T  25096030 atttacttacttttaatattctctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaatttgatcaatcttcttataaaaagg 25096129  T
Q  208 accnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagta 257  Q
    |||       ||||||||||||||||||||||||||||||||||||||||    
T  25096130 accaaaaaaattctcacttttgtttctaataaaaaggaccggagggagta 25096179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 8 - 257
Target Start/End: Original strand, 35612961 - 35613212
Alignment:
Q  8 ccaagaaaatacattgaaaatagtcatcttcatttaatacgcttctacatttnnnnnnn-ttctatgaatacccttaaattaattactctttattccatc 106  Q
    ||||| |||||||||||||||||| ||||||||||||||| | |||||||||        ||| |||||||||| ||||||||||||||||||||||| |    
T  35612961 ccaaggaaatacattgaaaatagttatcttcatttaatacacctctacatttaaaaaaaattccatgaatacccctaaattaattactctttattccacc 35613060  T
Q  107 aacttacttacttttaatattctctctcttaatcaataagagcacaaatgaaatttaacttcaaacataattaaaacttgatcaat-cttcttataaaaa 205  Q
    |||||| ||||||||||||||||||||| |||| |||||| |||||||||||||||| ||||||||||| || ||||||| |||||  ||||||||||||    
T  35613061 aacttatttacttttaatattctctctcataataaataagggcacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttcttataaaaa 35613160  T
Q  206 ggaccnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagta 257  Q
    |||||       ||||||||||||||||||||||||||||||||||||||||    
T  35613161 ggaccaaaaaaattctcacttttgtttctaataaaaaggaccggagggagta 35613212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 14 - 257
Target Start/End: Complemental strand, 46320678 - 46320434
Alignment:
Q  14 aaatacattgaaaatagtcatcttcatttaatacgcttctacatttnnnnnnnttctatgaatacccttaaattaattactctttattccatcaacttac 113  Q
    |||||||||||||||||| || |||||||||||| | |||| ||||       ||| || || |||| |||||||||||||||||||| || ||||||||    
T  46320678 aaatacattgaaaatagtaatattcatttaatacacctctatatttaagaaacttccattaacacccctaaattaattactctttatttcaccaacttac 46320579  T
Q  114 ttacttttaatattctctctcttaatcaataagagcacaaatgaaatttaacttcaaacataattaaaacttgatcaat-cttcttataaaaaggaccnn 212  Q
    ||||||||||||||||||||| |||| |||||| | |||||||||||||||||||||||||| |||||||||| |||||  |||||||||||||||||      
T  46320578 ttacttttaatattctctctcataataaataagggtacaaatgaaatttaacttcaaacatacttaaaacttggtcaatatttcttataaaaaggaccta 46320479  T
Q  213 nnnnnttctcacttttgtttctaataaaaaggaccggagggagta 257  Q
         ||||||||||||||||||||||||||||||||||||||||    
T  46320478 aaaaattctcacttttgtttctaataaaaaggaccggagggagta 46320434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 14 - 257
Target Start/End: Complemental strand, 50834251 - 50834007
Alignment:
Q  14 aaatacattgaaaatagtcatcttcatttaatacgcttctacatttnnnnnnnttctatgaatacccttaaattaattactctttattccatcaacttac 113  Q
    ||||| |||||||||||| ||||||||||||||    |||||||||        || |||||||||||||||||||||||||||||||||| ||||||||    
T  50834251 aaatatattgaaaatagttatcttcatttaatatatctctacatttaaaaaaaatccatgaatacccttaaattaattactctttattccaccaacttac 50834152  T
Q  114 ttacttttaatattctctctcttaatcaataagagcacaaatgaaatttaacttcaaacataattaaaacttgatcaat-cttcttataaaaaggaccnn 212  Q
    ||||||||||||||||||||| |||| | |||| |||||||||||||||| ||||||||||| || ||||||| |||||  |||||||||||||||||      
T  50834151 ttacttttaatattctctctcataataagtaagggcacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttcttataaaaaggaccaa 50834052  T
Q  213 nnnnnttctcacttttgtttctaataaaaaggaccggagggagta 257  Q
         |||||||||||||| |||||||||||||||||||||||||    
T  50834051 aaaaattctcacttttgttcctaataaaaaggaccggagggagta 50834007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 14 - 257
Target Start/End: Original strand, 50841602 - 50841846
Alignment:
Q  14 aaatacattgaaaatagtcatcttcatttaatacgcttctacatttnnnnnnnttctatgaatacccttaaattaattactctttattccatcaacttac 113  Q
    ||||| |||||||||||| ||||||||||||||    |||||||||        || |||||||||||||||||||||||||||||||||| ||||||||    
T  50841602 aaatatattgaaaatagttatcttcatttaatatatctctacatttaaaaaaaatccatgaatacccttaaattaattactctttattccaccaacttac 50841701  T
Q  114 ttacttttaatattctctctcttaatcaataagagcacaaatgaaatttaacttcaaacataattaaaacttgatcaat-cttcttataaaaaggaccnn 212  Q
    ||||||||||||||||||||| |||| | |||| |||||||||||||||| ||||||||||| || ||||||| |||||  |||||||||||||||||      
T  50841702 ttacttttaatattctctctcataataagtaagggcacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttcttataaaaaggaccaa 50841801  T
Q  213 nnnnnttctcacttttgtttctaataaaaaggaccggagggagta 257  Q
         |||||||||||||| |||||||||||||||||||||||||    
T  50841802 aaaaattctcacttttgttcctaataaaaaggaccggagggagta 50841846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 67 - 255
Target Start/End: Complemental strand, 25313555 - 25313366
Alignment:
Q  67 ttctatgaatacccttaaattaattactctttattccatcaacttacttacttttaatattctctctcttaatcaataagagcacaaatgaaatttaact 166  Q
    |||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||| |||||| |||||||||||||||| ||    
T  25313555 ttctatgaatacccctaaattaattattctttattccaccaacttacttacttttaatattctctctcataataaataagggcacaaatgaaatttagct 25313456  T
Q  167 tcaaacataattaaaacttgatcaat-cttcttataaaaaggaccnnnnnnnttctcacttttgtttctaataaaaaggaccggagggag 255  Q
    ||||||||| || ||||||| |||||  |||||||||||||||||       ||||||||||||||||||||||||||||||||||||||    
T  25313455 tcaaacatacttgaaacttggtcaatatttcttataaaaaggacccaaaaaattctcacttttgtttctaataaaaaggaccggagggag 25313366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 14 - 203
Target Start/End: Original strand, 48905583 - 48905772
Alignment:
Q  14 aaatacattgaaaatagtcatcttcatttaatacgcttctacatttnnnnnnnttctatgaatacccttaaattaattactctttattccatcaacttac 113  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||       ||  |||||||||| ||||||||||||||||||||||| ||||||||    
T  48905583 aaatacattgaaaatagtcatcttcatttaatacatttctacatttaaaaaaatttcatgaatacccctaaattaattactctttattccaccaacttac 48905682  T
Q  114 ttacttttaatattctctctcttaatcaataagagcacaaatgaaatttaacttcaaacataattaaaacttgatcaatcttcttataaa 203  Q
    ||||||||||||||||||||| |||| |||||| |||||||||||||||| ||||||||||| || ||||||| ||||||||||||||||    
T  48905683 ttacttttaatattctctctcataataaataagggcacaaatgaaatttaccttcaaacatacttgaaacttggtcaatcttcttataaa 48905772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 71 - 257
Target Start/End: Original strand, 23026292 - 23026479
Alignment:
Q  71 atgaatacccttaaattaattactctttattccatcaacttacttacttttaatattctctctcttaatcaataagagcacaaatgaaatttaacttcaa 170  Q
    |||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  23026292 atgaatgcccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataatcaataagggcacaaatgaaatttaacttcaa 23026391  T
Q  171 acataattaaaacttgatcaat-cttcttataaaaaggaccnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagta 257  Q
    ||||| || ||| || ||||||  |||||||||||| ||||       ||||||||||||||||||||||||||||||||||| ||||    
T  23026392 acatacttgaaattttatcaatatttcttataaaaatgaccaaaaaaattctcacttttgtttctaataaaaaggaccggaggaagta 23026479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 14 - 257
Target Start/End: Complemental strand, 22515885 - 22515639
Alignment:
Q  14 aaatacattgaaaatagtcatcttcatttaatacgcttc--tacatttnnnnnnnttctatgaatacccttaaattaattactctttattccatcaactt 111  Q
    |||||||||||||||||| ||||||||||||||| | ||  |||||||       ||| || ||||  ||||||||||||||||||||||||| ||||||    
T  22515885 aaatacattgaaaatagttatcttcatttaatacacctcaatacatttaaaaaaattccataaatattcttaaattaattactctttattccaccaactt 22515786  T
Q  112 acttacttttaatattctctctcttaatcaataagagcacaaatgaaatttaacttcaaacataattaaaacttgatcaat-cttcttataaaaaggacc 210  Q
    ||||||||||||||||||||||| |||| |||||| |||||||||||||||| ||||| ||||| || ||||||| |||||  |||||||||||||||||    
T  22515785 acttacttttaatattctctctcataataaataagggcacaaatgaaatttagcttcagacatacttgaaacttggtcaatatttcttataaaaaggacc 22515686  T
Q  211 nnnnnnnttctcacttttgtttctaataaaaaggaccggagggagta 257  Q
            | ||| ||||||||||||||||||||| |||||||||||    
T  22515685 aaaaagaatttcagttttgtttctaataaaaaggatcggagggagta 22515639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 8 - 203
Target Start/End: Original strand, 9663849 - 9664041
Alignment:
Q  8 ccaagaaaatacattgaaaatagtcatcttcatttaatacgcttctacatttnnnnnnnttctatgaatacccttaaattaattactctttattccatca 107  Q
    ||||| ||||||||||||||||||||||||||||||||||  ||||||||||       ||  |||||||||| ||||||||||||||||||||||| ||    
T  9663849 ccaaggaaatacattgaaaatagtcatcttcatttaatacatttctacatttaaaaaaatttcatgaatacccctaaattaattactctttattccacca 9663948  T
Q  108 acttacttacttttaatattctctctcttaatcaataagagcacaaatgaaatttaacttcaaacataattaaaacttgatcaatcttcttataaa 203  Q
    |||||||||||||||||||  |||||| |||| |||||| |||||||||||||||| ||||||||||  || ||||||| ||||||||||||||||    
T  9663949 acttacttacttttaatat--tctctcataataaataagggcacaaatgaaatttaccttcaaacat-cttgaaacttggtcaatcttcttataaa 9664041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 22 - 255
Target Start/End: Original strand, 49794914 - 49795149
Alignment:
Q  22 tgaaaatagtcatcttcatttaatacgcttctacatttnnnnnnnttctatgaatacccttaaattaattactctttattccatcaacttacttactttt 121  Q
    |||||||||| ||||||||||||||| | |||||||||       ||  |||||||||| | ||||||||||||||||||||| ||||||||||||||||    
T  49794914 tgaaaatagttatcttcatttaatacacctctacatttaattttttttcatgaataccccttaattaattactctttattccaccaacttacttactttt 49795013  T
Q  122 aatattctctctcttaatcaataagagcacaaatgaaatttaacttcaaacataattaaaacttgatcaat-cttcttataaaaag--gaccnnnnnnnt 218  Q
    |||||| |||||| |||| |||||||| |||||||||||||| |||| |||||| || |||||||||||||  |||||||||||||   |         |    
T  49795014 aatattttctctcataataaataagagtacaaatgaaatttagcttc-aacatacttgaaacttgatcaatatttcttataaaaagaaaaaaaaaaagat 49795112  T
Q  219 tctcacttttgtttctaataaaaaggaccggagggag 255  Q
    |||||||||||||||||||||||||||||||||||||    
T  49795113 tctcacttttgtttctaataaaaaggaccggagggag 49795149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 14 - 241
Target Start/End: Original strand, 20922722 - 20922951
Alignment:
Q  14 aaatacattgaaaatagtcatcttcatttaatacgcttctacatttnnnnnnnt-tctatgaatacccttaaattaattactctttattccatcaactta 112  Q
    |||||||||||||||| | ||||||||||||||| | |||||||||         || ||||||| || ||||||||||| | ||||||||| |||||||    
T  20922722 aaatacattgaaaatatttatcttcatttaatacacctctacatttaaaaaaaaatcaatgaatatccctaaattaattattttttattccaccaactta 20922821  T
Q  113 cttacttttaatattctctctcttaatcaataagagcacaaatgaaatttaacttcaaacataattaaaacttgatcaat-cttcttataaaaaggaccn 211  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||  ||| || ||||||| |||||  ||||||||||||| |||     
T  20922822 cttacttttaatattctctctcataataaataagagcacaaatgaaatttagcttcaagaatacttgaaacttggtcaatatttcttataaaaagaacca 20922921  T
Q  212 nnnnnnttctcacttttgtttctaataaaa 241  Q
           | |||||||||||||||||||||    
T  20922922 aaaaaaatttcacttttgtttctaataaaa 20922951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 85 - 161
Target Start/End: Original strand, 33280340 - 33280416
Alignment:
Q  85 attaattactctttattccatcaacttacttacttttaatattctctctcttaatcaataagagcacaaatgaaatt 161  Q
    ||||| ||||||| ||||||  |||  ||||||||||||||||||||||| |||| ||||||| |||||||||||||    
T  33280340 attaactactcttaattccaataaccaacttacttttaatattctctctcgtaataaataagaacacaaatgaaatt 33280416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 47
Target Start/End: Original strand, 23026233 - 23026266
Alignment:
Q  14 aaatacattgaaaatagtcatcttcatttaatac 47  Q
    |||||||||||||||||| |||||||||||||||    
T  23026233 aaatacattgaaaatagttatcttcatttaatac 23026266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 165; Significance: 3e-88; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 8 - 258
Target Start/End: Complemental strand, 13882334 - 13882085
Alignment:
Q  8 ccaagaaaatacattgaaaatagtcatcttcatttaatacgcttctacatttnnnnnnnttctatgaatacccttaaattaattactctttattccatca 107  Q
    |||||||| ||||||||||||||||||||||||||||||| |||||||||||       |||||||||||||||||||||||||||||||||||||||||    
T  13882334 ccaagaaattacattgaaaatagtcatcttcatttaatacacttctacatttaaaataattctatgaatacccttaaattaattactctttattccatca 13882235  T
Q  108 acttacttacttttaatattctctctcttaatcaataagagcacaaatgaaatttaacttcaaacataattaaaacttgatcaatcttcttataaaaagg 207  Q
    ||||||||||||| ||||||||||||| ||||||||||| |||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||    
T  13882234 acttacttacttt-aatattctctctcataatcaataagggcacaaatgaaatttagcttcaaacatatttgaaacttgatcaatcttcttataaaaagg 13882136  T
Q  208 accnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagtac 258  Q
    |||       ||||||||||| ||||||||||||||||||||||| |||||    
T  13882135 accaaaaaaattctcacttttatttctaataaaaaggaccggaggtagtac 13882085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 8 - 257
Target Start/End: Complemental strand, 8669983 - 8669735
Alignment:
Q  8 ccaagaaaatacattgaaaatagtcatcttcatttaatacgcttctacatttnnnnnnnttctatgaatacccttaaattaattactctttattccatca 107  Q
    |||| ||||||||||||||||||||||||||||||||||| |||||||||||        | ||||||||||||||||||||||||||||||||||||||    
T  8669983 ccaaaaaaatacattgaaaatagtcatcttcatttaatacacttctacatttaaaaaaaatttatgaatacccttaaattaattactctttattccatca 8669884  T
Q  108 acttacttacttttaatattctctctcttaatcaataagagcacaaatgaaatttaacttcaaacataattaaaacttgatcaatcttcttataaaaagg 207  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||    
T  8669883 acttacttacttttaatattctctctcataatcaataagggcacaaatgaaatttaacttcaaacatacttgaaacttgatcaatcttcttataaaaagg 8669784  T
Q  208 accnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagta 257  Q
    | |        |||||||||| ||||||||||||||||||||| ||||||    
T  8669783 a-caaaaaaaatctcacttttatttctaataaaaaggaccggaaggagta 8669735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 8 - 248
Target Start/End: Complemental strand, 29226525 - 29226286
Alignment:
Q  8 ccaagaaaatacattgaaaatagtcatcttcatttaatacgcttctacatttnnnnnnnttctatgaatacccttaaattaattactctttattccatca 107  Q
    |||| ||||||||||||||||||||||||||||||||||| |||||||||||       |||||| ||||||||||||||||||||||||||||||||||    
T  29226525 ccaaaaaaatacattgaaaatagtcatcttcatttaatacacttctacatttaaaaaaattctatcaatacccttaaattaattactctttattccatca 29226426  T
Q  108 acttacttacttttaatattctctctcttaatcaataagagcacaaatgaaatttaacttcaaacataattaaaacttgatcaatcttcttataaaaagg 207  Q
    |||||||||||||||||||| ||  || ||||||||||| |||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||    
T  29226425 acttacttacttttaatattttcattcataatcaataag-gcacaaatgaaatttagcttcaaacatacttgaaacttgatcaatcttcttataaaaagg 29226327  T
Q  208 accnnnnnnnttctcacttttgtttctaataaaaaggaccg 248  Q
    | |       |||||||||||||||||||||||||||||||    
T  29226326 aacaaaaaaattctcacttttgtttctaataaaaaggaccg 29226286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 9 - 251
Target Start/End: Complemental strand, 37534016 - 37533773
Alignment:
Q  9 caagaaaatacattgaaaatagtcatcttcatttaatacgcttctacatttnnnnnnn-ttctatgaatacccttaaattaattactctttattccatca 107  Q
    |||||||||||||| ||||||||||||||||||||||||  ||||||||||        || |||||||||  |||||||||||||||||||||||||||    
T  37534016 caagaaaatacattaaaaatagtcatcttcatttaatacatttctacatttaaaaaaaattatatgaatacatttaaattaattactctttattccatca 37533917  T
Q  108 acttacttacttttaatattctctctcttaatcaataagagcacaaatgaaatttaacttcaaacataattaaaacttgatcaatcttcttataaaaagg 207  Q
    ||||||||| ||||||||||||||||| ||||||||||| ||||||| |||||||||||||||| ||| || |||||||||||||||||| |||||||||    
T  37533916 acttacttatttttaatattctctctcataatcaataagggcacaaacgaaatttaacttcaaatatatttgaaacttgatcaatcttctaataaaaagg 37533817  T
Q  208 accnnnnnnnttctcacttttgtttctaataaaaaggaccggag 251  Q
    | |       ||||||||||||||| |||||||||||| |||||    
T  37533816 atcaaaaaaattctcacttttgtttataataaaaaggatcggag 37533773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 14 - 257
Target Start/End: Complemental strand, 32305952 - 32305708
Alignment:
Q  14 aaatacattgaaaatagtcatcttcatttaatacgcttctacatttnnnnnnn-ttctatgaatacccttaaattaattactctttattccatcaactta 112  Q
    |||||||||||||||||| ||||| |||||||||   |||||||||        ||| |||||||||| ||||||||||| ||||||||||| |||||||    
T  32305952 aaatacattgaaaatagttatctt-atttaatacatctctacatttaaaaaatattccatgaatacccctaaattaattattctttattccaccaactta 32305854  T
Q  113 cttacttttaatattctctctcttaatcaataagagcacaaatgaaatttaacttcaaacataattaaaacttgatcaat-cttcttataaaaaggaccn 211  Q
    |||||||||||||||||||||| |||| |||||| |||||||||||||||| ||||||||||| || ||||||| |||||  |||||||||||||||||     
T  32305853 cttacttttaatattctctctcataataaataagggcacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttcttataaaaaggacca 32305754  T
Q  212 nnnnnnttctcacttttgtttctaataaaaaggaccggagggagta 257  Q
          || |||||||||||||||||||||||||||||||| ||||    
T  32305753 aaaaaattttcacttttgtttctaataaaaaggaccggaggtagta 32305708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 8 - 252
Target Start/End: Complemental strand, 8107143 - 8106899
Alignment:
Q  8 ccaagaaaatacattgaaaatagtcatcttcatttaatacgcttctacatttnnnnnnnttctatgaatacccttaaattaattactctttattccatca 107  Q
    ||||| ||||||||||||||||||| |||||||||||||| |||||||||||        |  |||||||||| |||||||||| ||||||||||||  |    
T  8107143 ccaaggaaatacattgaaaatagtcctcttcatttaatacacttctacatttaaaaaaaattcatgaatacccctaaattaattcctctttattccacta 8107044  T
Q  108 acttacttacttttaatattctctctcttaatcaataagagcacaaatgaaatttaacttcaaacataattaaaacttgatcaatcttcttataaaaagg 207  Q
    ||||| ||||||||||| |||| |||| |||| ||||||  |||||||||||||||  |||||||||| || ||||||| ||||||||||||||||||||    
T  8107043 acttatttacttttaattttctatctcataataaataaggacacaaatgaaatttagtttcaaacatacttgaaacttggtcaatcttcttataaaaagg 8106944  T
Q  208 accnnnnnnnttctcacttttgtttctaataaaaaggaccggagg 252  Q
    | |       |||||| ||||||||||||||||||||||||||||    
T  8106943 atcaaaaaaattctcatttttgtttctaataaaaaggaccggagg 8106899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 14 - 250
Target Start/End: Original strand, 35634740 - 35634977
Alignment:
Q  14 aaatacattgaaaatagtcatcttcatttaatacgcttctacatttnnnnnnnttctatgaatacccttaaattaattactctttattccatcaacttac 113  Q
    |||||||||||||||||| ||||||||||||||| ||| |||||||        || ||||||| || |||||||||||||||||||  || ||||||||    
T  35634740 aaatacattgaaaatagttatcttcatttaatacacttttacatttaaaaaaaatccatgaataaccctaaattaattactctttatcgcaccaacttac 35634839  T
Q  114 ttacttttaatattctctctcttaatcaataagagcacaaatgaaatttaacttcaaacataattaaaacttgatcaat-cttcttataaaaaggaccnn 212  Q
    ||||||||||||||||||||| |||| |||||| |||||||||||||||| ||||||||||| || ||||||| |||||  |||||||||||| |||       
T  35634840 ttacttttaatattctctctcataataaataagggcacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttcttataaaaatgacaaa 35634939  T
Q  213 nnnnnttctcacttttgtttctaataaaaaggaccgga 250  Q
         ||||||||||||||| ||||||||| |||||||    
T  35634940 aaaaattctcacttttgtttataataaaaatgaccgga 35634977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 14 - 206
Target Start/End: Complemental strand, 42570148 - 42569953
Alignment:
Q  14 aaatacattgaaaatagtcatcttcatttaatacgcttctacattt--nnnnnnnttctatgaatacccttaaattaattactctttattccatcaactt 111  Q
    |||||||||||||||||| ||||||||||||||| | | |||| ||          |||||||||| || ||||||||||||| |||||| |||||||||    
T  42570148 aaatacattgaaaatagttatcttcatttaatacacctttacaattaaaaaaaaaatctatgaatatccctaaattaattactatttatttcatcaactt 42570049  T
Q  112 acttacttttaatattctctctcttaatcaataagagcacaaatgaaatttaacttcaaacataattaaaacttgatcaat-cttcttataaaaag 206  Q
    ||||| ||||||||||||||||| |||| |||||  |||||||| ||||||| ||||||  ||| |||||||||| |||||  |||||||||||||    
T  42570048 acttatttttaatattctctctcataataaataaatgcacaaataaaatttagcttcaatgatacttaaaacttggtcaatatttcttataaaaag 42569953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 45177546 - 45177598
Alignment:
Q  8 ccaagaaaata-cattgaaaatagtcatcttcatttaatacgcttctacattt 59  Q
    ||||||||||| ||||||||||||||||||||||||||||| |||||||||||    
T  45177546 ccaagaaaataacattgaaaatagtcatcttcatttaatacacttctacattt 45177598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 85 - 173
Target Start/End: Original strand, 36741715 - 36741806
Alignment:
Q  85 attaattactctttattccatcaacttacttacttttaatattctctc---tcttaatcaataagagcacaaatgaaatttaacttcaaaca 173  Q
    ||||||||||||| ||||||  ||||||||||||||||||||||||||   |  |||| ||||||  ||||||||||||||| |||| ||||    
T  36741715 attaattactcttaattccactaacttacttacttttaatattctctctaataataataaataaggacacaaatgaaatttagcttctaaca 36741806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 208
Target Start/End: Complemental strand, 17855533 - 17855397
Alignment:
Q  73 gaatacccttaaattaattactctttattccatcaacttacttacttttaatattctctctcttaatcaataagagcacaaatgaaatttaacttcaaac 172  Q
    |||||||| ||||||||||||| ||   ||||| |||||| |||||||||||| | | |||| | || ||||||   ||||||||||||||  ||| |||    
T  17855533 gaatacccctaaattaattactattgcctccattaacttaattacttttaatactatttctcatcataaataaggatacaaatgaaatttagtttccaac 17855434  T
Q  173 ataattaaaacttgatcaat-cttcttataaaaagga 208  Q
    | | |||||| ||| |||||  |||||||||||||||    
T  17855433 acacttaaaaattgttcaatatttcttataaaaagga 17855397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 157; Significance: 2e-83; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 8 - 257
Target Start/End: Complemental strand, 1553966 - 1553717
Alignment:
Q  8 ccaagaaaatacattgaaaatagtcatcttcatttaatacgcttctacatttnnnnnnnttctatgaatacccttaaattaattactctttattccatca 107  Q
    |||||||||||||||||||||||||| ||||||||||||| |||||||||||       |||||| ||||||||||||||||||||||||||||||||||    
T  1553966 ccaagaaaatacattgaaaatagtcaacttcatttaatacacttctacatttaaaaaaattctataaatacccttaaattaattactctttattccatca 1553867  T
Q  108 acttacttacttttaatattctctctcttaatcaataagagcacaaatgaaatttaacttcaaacataattaaaacttgatcaat-cttcttataaaaag 206  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||| || ||| ||||||||| ||||||||||||||    
T  1553866 acttacttacttttaatattctctctcataatcaataagggcacaaatgaaatttagcttcaaacatacttgaaatttgatcaatacttcttataaaaag 1553767  T
Q  207 gaccnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagta 257  Q
    ||||       |||||| |||||||||||||||||||||||||||||||||    
T  1553766 gaccacaaaaattctca-ttttgtttctaataaaaaggaccggagggagta 1553717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 25 - 257
Target Start/End: Original strand, 27332899 - 27333131
Alignment:
Q  25 aaatagtcatcttcatttaatacgcttctacatttnnnnnnnttctatgaatacccttaaattaattactctttattccatcaacttacttacttttaat 124  Q
    ||||||||||||||||||||||| |||||| ||||       |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  27332899 aaatagtcatcttcatttaatacacttctatatttaaaaaaattctataaatacccttaaattaattactctttattccattaacttacttacttttaat 27332998  T
Q  125 attctctctcttaatcaataagagcacaaatgaaatttaacttcaaacataattaaaacttgatcaatcttcttataaaaaggaccnnnnnnnttctcac 224  Q
    ||| |||||| ||||||||||| | |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||       |||||||    
T  27332999 attttctctcataatcaataagggtacaaatgaaatttagcttcaaacatacttaaaacttgatcaatcttcttataaaaaggaccaaaaaaattctcac 27333098  T
Q  225 ttttgtttctaataaaaaggaccggagggagta 257  Q
    |||||||||||||||||||||||||||| ||||    
T  27333099 ttttgtttctaataaaaaggaccggaggaagta 27333131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 8 - 257
Target Start/End: Complemental strand, 30222942 - 30222693
Alignment:
Q  8 ccaagaaaatacattgaaaatagtcatcttcatttaatacgcttctacatttnnnnnnnttctatgaatacccttaaattaattactctttattccatca 107  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||||||        | |||||||| ||||||||||||||||||||| |||||||    
T  30222942 ccaagaaaatacattgaaaatagtcatcttcatttaatatacttctacatttaaaaaaagtatatgaatatccttaaattaattactctttaatccatca 30222843  T
Q  108 acttacttacttttaatattctctctcttaatcaataagagcacaaatgaaatttaacttcaaacataattaaaacttgatcaatcttcttataaaaagg 207  Q
    |||||||||||||||||||||||| || |||||||||||| |||||||||| |||| | ||||||||| || |||||||||||||||||||||||||| |    
T  30222842 acttacttacttttaatattctctttcataatcaataagaacacaaatgaattttagcatcaaacatatttgaaacttgatcaatcttcttataaaaatg 30222743  T
Q  208 accnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagta 257  Q
    | |       |||||| |||||||||||||||||||||||||||| ||||    
T  30222742 atcaaaaaaattctcatttttgtttctaataaaaaggaccggaggtagta 30222693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 9 - 257
Target Start/End: Original strand, 45192517 - 45192765
Alignment:
Q  9 caagaaaatacattgaaaatagtcatcttcatttaatacgcttctacatttnnnnnnnttctatgaatacccttaaattaattactctttattccatcaa 108  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||||||       ||| ||||||||||||||||||||||||||||||||||||||    
T  45192517 caagaaaatacattgaaaatagtcatcttcatttaatatacttctacatttaaaaaaattccatgaatacccttaaattaattactctttattccatcaa 45192616  T
Q  109 cttacttacttttaatattctctctcttaatcaataagagcacaaatgaaatttaacttcaaacataattaaaacttgatcaatcttcttataaaaagga 208  Q
    |||||||| |||||||||||| |||| |||| ||||||| |||||||||| |||| | | ||| ||| |  |||||| ||||||||||||||||||||||    
T  45192617 cttacttatttttaatattctgtctcataattaataagaacacaaatgaattttagcataaaaaatattagaaacttaatcaatcttcttataaaaagga 45192716  T
Q  209 ccnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagta 257  Q
     |       ||||||||||||||||||||||||||||||||||| ||||    
T  45192717 tcaaaaaaattctcacttttgtttctaataaaaaggaccggaggtagta 45192765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 9 - 243
Target Start/End: Original strand, 35050249 - 35050483
Alignment:
Q  9 caagaaaatacattgaaaatagtcatcttcatttaatacgcttctacatttnnnnnnnttctatgaatacccttaaattaattactctttattccatcaa 108  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||          |||| ||||||||||||||||||||||||||| ||||||    
T  35050249 caagaaaatacattgaaaatagtcatcttcatttaatacacttctacatttaaaaaaaaaatatgtatacccttaaattaattactctttatttcatcaa 35050348  T
Q  109 cttacttacttttaatattctctctcttaatcaataagagcacaaatgaaatttaacttcaaacataattaaaacttgatcaatcttcttataaaaagga 208  Q
    |||||||||||||||||||||||||| |||||||||||  ||||||||||||||| ||||| ||||| || |||||||||| ||||| |||||||||| |    
T  35050349 cttacttacttttaatattctctctcataatcaataaggacacaaatgaaatttagcttcagacatacttgaaacttgatcgatctttttataaaaagaa 35050448  T
Q  209 ccnnnnnnnttctcacttttgtttctaataaaaag 243  Q
    ||       ||||||||||||||||||||||||||    
T  35050449 ccaaaaaaattctcacttttgtttctaataaaaag 35050483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 8 - 257
Target Start/End: Complemental strand, 27654854 - 27654606
Alignment:
Q  8 ccaagaaaatacattgaaaatagtcatcttcatttaatacgcttctacatttnnnnnnnttctatgaatacccttaaattaattactctttattccatca 107  Q
    ||||| |||||||||||||||||| ||||||||||||||| | |||| ||||       ||| || || |||| ||||||||||||||||||||||| ||    
T  27654854 ccaaggaaatacattgaaaatagtaatcttcatttaatacacctctatatttaagaaaattccattaaaacccctaaattaattactctttattccacca 27654755  T
Q  108 acttacttacttttaatattctctctcttaatcaataagagcacaaatgaaatttaacttcaaacataattaaaacttgatcaat-cttcttataaaaag 206  Q
    |||||||||||||||||||||  |||| |||| |||||| |||||||||||||||||||||||| ||| ||||||||||||||||  |||||||||||||    
T  27654754 acttacttacttttaatattc--tctcataataaataagggcacaaatgaaatttaacttcaaagatacttaaaacttgatcaatatttcttataaaaag 27654657  T
Q  207 gaccnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagta 257  Q
    ||||       ||||||||||||||||||||||||||||||||||||||||    
T  27654656 gaccaaaaaaattctcacttttgtttctaataaaaaggaccggagggagta 27654606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 9 - 257
Target Start/End: Original strand, 16130456 - 16130707
Alignment:
Q  9 caagaaaatacattgaaaatagtcatcttcatttaatacgcttctacatttnnnnnnnt--tctatgaatacccttaaattaattactctttattccatc 106  Q
    |||| |||||||||||||||||| ||||||||||||||| | |||||||||          || |||||||||||||||||||||||| ||||||||| |    
T  16130456 caaggaaatacattgaaaatagttatcttcatttaatacacctctacatttaaaaaaaaaatccatgaatacccttaaattaattactttttattccacc 16130555  T
Q  107 aacttacttacttttaatattctctctcttaatcaataagagcacaaatgaaatttaacttcaaacataattaaaacttgatcaat-cttcttataaaaa 205  Q
    |||||||||||||||||||||||||||| |||| |||||| |||||||||||||||| ||||||||||| || ||||||| |||||  ||||||||||||    
T  16130556 aacttacttacttttaatattctctctcataataaataagggcacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttcttataaaaa 16130655  T
Q  206 ggaccnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagta 257  Q
    |||||       || |||||||||||||||||||||||||||||||||||||    
T  16130656 ggaccaaattttttttcacttttgtttctaataaaaaggaccggagggagta 16130707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 8 - 257
Target Start/End: Original strand, 5800381 - 5800629
Alignment:
Q  8 ccaagaaaatacattgaaaatagtcatcttcatttaatacgcttctacatttnnnnnnnttctatgaatacccttaaattaattactctttattccatca 107  Q
    ||||| |||||||||||||||||||||||||||||||||| |||||| |||        ||| |||||||||| |||||||||| ||||||||||||  |    
T  5800381 ccaaggaaatacattgaaaatagtcatcttcatttaatacacttctatattaaaaaaaattc-atgaatacccctaaattaatttctctttattccacta 5800479  T
Q  108 acttacttacttttaatattctctctcttaatcaataagagcacaaatgaaatttaacttcaaacataattaaaacttgatcaatcttcttataaaaagg 207  Q
    ||||| ||||||||||| ||||||||| |||| ||||||  ||||||||||||||| ||||||||||| || ||||||| ||||||||||||||||||||    
T  5800480 acttatttacttttaattttctctctcataataaataaggacacaaatgaaatttatcttcaaacatacttgaaacttggtcaatcttcttataaaaagg 5800579  T
Q  208 accnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagta 257  Q
    |||       ||| |||||||||||||||||||||||| | |||||||||    
T  5800580 accaaaaaaattcccacttttgtttctaataaaaaggaactgagggagta 5800629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 71 - 257
Target Start/End: Original strand, 16129970 - 16130157
Alignment:
Q  71 atgaatacccttaaattaattactctttattccatcaacttacttacttttaatattctctctcttaatcaataagagcacaaatgaaatttaacttcaa 170  Q
    |||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |||| |||||| |||||||||||||||| ||||||    
T  16129970 atgaatacccctaaattaattactttttattccaccaacttacttacttttaatattctctctcataataaataagggcacaaatgaaatttagcttcaa 16130069  T
Q  171 acataattaaaacttgatcaat-cttcttataaaaaggaccnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagta 257  Q
    ||||| || ||||||| |||||  |||||||||||||||||       || |||||||||||||||||||||||||||||||||||||    
T  16130070 acatacttgaaacttggtcaatatttcttataaaaaggaccaaattttttttcacttttgtttctaataaaaaggaccggagggagta 16130157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 8 - 257
Target Start/End: Original strand, 40988011 - 40988261
Alignment:
Q  8 ccaagaaaatacattgaaaatagtcatcttcatttaatacgcttctacatttnnnnnnn-ttctatgaatacccttaaattaattactctttattccatc 106  Q
    ||||| |||||||||||||||||| ||||||||||||||| | |||||||||        ||| |||||||||| ||||||||||||||||||||||  |    
T  40988011 ccaaggaaatacattgaaaatagttatcttcatttaatacacctctacatttaaaaaaaattcaatgaatacccctaaattaattactctttattccgcc 40988110  T
Q  107 aacttacttacttttaatattctctctcttaatcaataagagcacaaatgaaatttaacttcaaacataattaaaacttgatcaat-cttcttataaaaa 205  Q
    ||||||||||||||||||||  |||||| |||| |||||| ||||||||||||||||  |||||||||| |||||||||| |||||  ||||||||||||    
T  40988111 aacttacttacttttaatat--tctctcataataaataagggcacaaatgaaatttagtttcaaacatacttaaaacttggtcaatatttcttataaaaa 40988208  T
Q  206 ggacc-nnnnnnnttctcacttttgtttctaataaaaaggaccggagggagta 257  Q
    |||||           |||||||||||||||||||||||||||||||||||||    
T  40988209 ggaccaaaaaaaaaattcacttttgtttctaataaaaaggaccggagggagta 40988261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 77 - 254
Target Start/End: Complemental strand, 9411909 - 9411731
Alignment:
Q  77 acccttaaattaattactctttattccatcaacttacttacttttaatattctctctcttaatcaataagagcacaaatgaaatttaacttcaaacataa 176  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||| |||||| ||||||||||||||||| |||     
T  9411909 acccctaaattaattactctttattccaccaacttacttacttttaatattctctctcataataaataagggcacaagtgaaatttaacttcaaatatac 9411810  T
Q  177 ttaaaacttgatcaat-cttcttataaaaaggaccnnnnnnnttctcacttttgtttctaataaaaaggaccggaggga 254  Q
    || ||||||| |||||  |||||||||||||||||       || ||||||||||||||||||||| ||||||||||||    
T  9411809 ttgaaacttggtcaatatttcttataaaaaggaccaaaaaaattttcacttttgtttctaataaaatggaccggaggga 9411731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 8 - 176
Target Start/End: Complemental strand, 27846586 - 27846417
Alignment:
Q  8 ccaagaaaatacattgaaaatagtcatcttcatttaatacgcttctacatttnnnnnnn-ttctatgaatacccttaaattaattactctttattccatc 106  Q
    ||||| |||||| ||||||||||| ||||||||||||||| |||||||||||        ||| ||||||| |||||||||||||||| | ||||||| |    
T  27846586 ccaaggaaatactttgaaaatagttatcttcatttaatacacttctacatttaaaaacaattccatgaatatccttaaattaattactatctattccacc 27846487  T
Q  107 aacttacttacttttaatattctctctcttaatcaataagagcacaaatgaaatttaacttcaaacataa 176  Q
    ||||||||||||||||||||| |||||| |||| |||||| | |||||||||||||||||||||||||||    
T  27846486 aacttacttacttttaatattatctctcataataaataagggtacaaatgaaatttaacttcaaacataa 27846417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 14 - 206
Target Start/End: Complemental strand, 36834474 - 36834287
Alignment:
Q  14 aaatacattgaaaatagtcatcttcatttaatacgcttctacatttnnnnnnnttctatgaatacccttaaattaattactctttattccatcaacttac 113  Q
    ||||||||| |||||||||||||| ||||||||| |||||||||||       ||| |||||||||  ||||||||||||||||||||||| ||||||||    
T  36834474 aaatacattaaaaatagtcatctttatttaatacacttctacatttaaaaaatttc-atgaatacc--taaattaattactctttattccaccaacttac 36834378  T
Q  114 ttacttttaatattctctctcttaatcaataagagcacaaatgaaatttaacttcaaacataattaaaacttgatcaatcttcttataaaaag 206  Q
    ||||||||||||||  ||||  |||| |||||| | |||||||||||||| ||||||||||| || ||| || |||||| |||||||||||||    
T  36834377 ttacttttaatatt--ctcttataataaataagggtacaaatgaaatttagcttcaaacatacttgaaatttaatcaattttcttataaaaag 36834287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 9 - 143
Target Start/End: Complemental strand, 35428553 - 35428415
Alignment:
Q  9 caagaaaatacattgaaaatagtcatcttcatttaatacgcttctacatttnnnnnnnttctatgaatacccttaaattaattactctttattcc----a 104  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| ||||       || ||||||||||||||||||||||||||||||||||    |    
T  35428553 caagaaaatacattgaaaatagtcatcttcatttaacacgcttctatattttaaaaatttttatgaatacccttaaattaattactctttattccatcaa 35428454  T
Q  105 tcaacttacttacttttaatattctctctcttaatcaat 143  Q
    |||||||||||||||||||| ||||||||| ||||||||    
T  35428453 tcaacttacttacttttaattttctctctcataatcaat 35428415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 71 - 259
Target Start/End: Complemental strand, 34546834 - 34546648
Alignment:
Q  71 atgaatacccttaaattaattactctttattccatcaacttacttacttttaatattctctctcttaatcaataagagcacaaatgaaatttaacttcaa 170  Q
    |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||  | |||| |||| |||||| ||| |||||||| ||| ||||||    
T  34546834 atgaatacccctaaattaattactctttattccaccaacttacttacttttaatat--tttctcataataaataagggcagaaatgaaa-ttagcttcaa 34546738  T
Q  171 acataattaaaacttgatcaat-cttcttataaaaaggaccnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagtact 259  Q
    ||||| ||||||||||||||||  || ||||||||| |||        ||||||||||| ||||||||||||||||| | ||||||||||    
T  34546737 acatacttaaaacttgatcaatattttttataaaaaagacaaaaaaaattctcacttttatttctaataaaaaggacggaagggagtact 34546648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 8 - 257
Target Start/End: Original strand, 4813694 - 4813945
Alignment:
Q  8 ccaagaaaatacattgaaaatagtcatcttcatttaatacgcttctacatttnnnnnnntt-ctatgaatacccttaaattaattactctttattccatc 106  Q
    ||||| ||||||||| |||||||| ||||||||||||||| | ||| |||||       || | ||||||||| |||||||||||||| || |||||| |    
T  4813694 ccaaggaaatacattaaaaatagttatcttcatttaatacacctctccatttaaatagttttccatgaatacctttaaattaattacttttcattccacc 4813793  T
Q  107 aacttacttacttttaatattctctctcttaatcaataagagcacaaatgaaatttaacttcaaacataattaaaacttgatc-aatcttcttataaaaa 205  Q
    ||||||||||||||||||||||  |||| |||| |||||| ||||||||||||||||  ||||| || | |||||| ||| || ||  ||||  |||||     
T  4813794 aacttacttacttttaatattccttctcataataaataagggcacaaatgaaatttagtttcaagcacacttaaaaattggtcaaagtttctcgtaaaat 4813893  T
Q  206 ggaccnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagta 257  Q
    |||||        |||||||||||||||| ||||||||||||||| ||||||    
T  4813894 ggaccaaaaaaaatctcacttttgtttcttataaaaaggaccggatggagta 4813945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 79 - 257
Target Start/End: Original strand, 13879068 - 13879235
Alignment:
Q  79 ccttaaattaattactctttattccatcaacttacttacttttaatattctctctcttaatcaataagagcacaaatgaaatttaacttcaaacataatt 178  Q
    |||||||||||||||||||| ||||| ||||||| ||||| |||||||||| |||| |||| |||||| |||||||||||||||| |           ||    
T  13879068 ccttaaattaattactctttcttccaccaacttatttactattaatattctatctcataataaataagggcacaaatgaaatttagc-----------tt 13879156  T
Q  179 aaaacttgatcaatcttcttataaaaaggaccnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagta 257  Q
     ||||||||||||||||||| |||||||||||        | ||||||||||||||||||||||||| |||||||||||    
T  13879157 taaacttgatcaatcttcttgtaaaaaggaccaaaaaaaatttcacttttgtttctaataaaaaggatcggagggagta 13879235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 8 - 173
Target Start/End: Original strand, 23933261 - 23933427
Alignment:
Q  8 ccaagaaaatacattgaaaatagtcatcttcatttaatacgcttctacatttnnnnnnnttctatgaatacccttaaattaattactctttattccatca 107  Q
    |||| ||||||||||||||||| | || ||| |||||||  | |||||||||       ||  |||||||||| |||||||||||||||| |||| | ||    
T  23933261 ccaaaaaaatacattgaaaataattattttcttttaatatacctctacatttaattttttttcatgaatacccctaaattaattactcttgattctacca 23933360  T
Q  108 acttacttactttt-aatattctctctcttaatcaataagagcacaaatgaaatttaacttcaaaca 173  Q
    |||| |||| |||| |||||||||||   |||| |||||| ||||||||||||||||||||||||||    
T  23933361 actttcttattttttaatattctctcatataataaataagggcacaaatgaaatttaacttcaaaca 23933427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 136 - 257
Target Start/End: Complemental strand, 35121292 - 35121171
Alignment:
Q  136 taatcaataagagcacaaatgaaatttaacttcaaacataattaaaacttgatcaatcttcttataaaaaggaccnnnnnnnttctcacttttgtttcta 235  Q
    |||| |||||| |||||||||||||||  ||||||||||| || ||||||| |||||||||||||||||||||||       ||| ||| ||||||||||    
T  35121292 taataaataagggcacaaatgaaattttgcttcaaacatacttgaaacttggtcaatcttcttataaaaaggaccaaaaaaattcgcacatttgtttcta 35121193  T
Q  236 ataaaaaggaccggagggagta 257  Q
    ||||||| || ||| |||||||    
T  35121192 ataaaaatgatcggggggagta 35121171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 288 - 336
Target Start/End: Complemental strand, 19463977 - 19463929
Alignment:
Q  288 atgtaatgaatgcttggtttggaaacaggttgaactacacatgccaaac 336  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  19463977 atgtaatgaatgcttggtttggaaacaggttgaactacacatgccaaac 19463929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 9 - 163
Target Start/End: Complemental strand, 11908125 - 11907973
Alignment:
Q  9 caagaaaatacattgaaaatagtcatcttcatttaatacgcttctacatttnnnnnnnttctatgaatacccttaaattaattactctttattccatcaa 108  Q
    ||||||||||||||||||||    || ||||||||||||   | |||||||       ||| ||||||||| ||| ||||||||||||| |||||| |||    
T  11908125 caagaaaatacattgaaaatgactattttcatttaatacttctgtacatttaaatttcttccatgaatacctttacattaattactcttgattccaccaa 11908026  T
Q  109 cttacttacttttaatattctctctcttaatcaataagagcacaaatgaaattta 163  Q
    |||| ||| ||||||||  ||||||| |||| |||||   |||||||||||||||    
T  11908025 cttatttatttttaata--ctctctcataataaataaagacacaaatgaaattta 11907973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 13 - 104
Target Start/End: Complemental strand, 35121392 - 35121301
Alignment:
Q  13 aaaatacattgaaaatagtcatcttcatttaatacgcttctacattt--nnnnnnnttctatgaatacccttaaattaattactctttattcca 104  Q
    ||||||||||| ||||||||||||||||||||||| |||| ||||||         ||| ||||||||||||||||||||| ||||||||||||    
T  35121392 aaaatacattggaaatagtcatcttcatttaatacacttc-acatttaaaaaaaaattc-atgaatacccttaaattaattcctctttattcca 35121301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 47
Target Start/End: Original strand, 16129902 - 16129940
Alignment:
Q  9 caagaaaatacattgaaaatagtcatcttcatttaatac 47  Q
    |||| |||||||||||||||||| |||||||||||||||    
T  16129902 caaggaaatacattgaaaatagttatcttcatttaatac 16129940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 250
Target Start/End: Complemental strand, 35428420 - 35428357
Alignment:
Q  187 atcaatcttcttataaaaaggaccnnnnnnnttctcacttttgtttctaataaaaaggaccgga 250  Q
    ||||||||||||||||||||||         ||||||||||||||| |||||||||||||||||    
T  35428420 atcaatcttcttataaaaaggataaaaaaaattctcacttttgtttttaataaaaaggaccgga 35428357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 285
Target Start/End: Complemental strand, 19464047 - 19464018
Alignment:
Q  256 tactgttatacctggagctccaacgccgcc 285  Q
    ||||||||||||||||||||||||||||||    
T  19464047 tactgttatacctggagctccaacgccgcc 19464018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 45
Target Start/End: Complemental strand, 34546899 - 34546862
Alignment:
Q  8 ccaagaaaatacattgaaaatagtcatcttcatttaat 45  Q
    ||||| |||||||||||||||||| |||||||||||||    
T  34546899 ccaaggaaatacattgaaaatagttatcttcatttaat 34546862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 136; Significance: 7e-71; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 67 - 259
Target Start/End: Original strand, 21262900 - 21263092
Alignment:
Q  67 ttctatgaatacccttaaattaattactctttattccatcaacttacttacttttaatattctctctcttaatcaataagagcacaaatgaaatttaact 166  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | || ||||||||||||| ||    
T  21262900 ttctataaatacccttaaattaattactctttattccatcaacttacttacttttaatattctctctcataatcaatatgggcgcaaatgaaatttagct 21262999  T
Q  167 tcaaacataattaaaacttgatcaatcttcttataaaaaggaccnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagtact 259  Q
    ||||||||| || |||||||||||||||||||||||||||||||       || |||||||||||||||||||||||||||||||||||||||    
T  21263000 tcaaacatacttgaaacttgatcaatcttcttataaaaaggaccaaaaaaattatcacttttgtttctaataaaaaggaccggagggagtact 21263092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 8 - 257
Target Start/End: Complemental strand, 33314578 - 33314329
Alignment:
Q  8 ccaagaaaatacattgaaaatagtcatcttcatttaatacgcttctacatttnnnnnnnttctatgaatacccttaaattaattactctttattccatca 107  Q
    ||||| ||||||||||||||| ||||||||||||||||||  ||||||| ||       ||  |||||||  | ||||||||||||||||||||||| ||    
T  33314578 ccaaggaaatacattgaaaatggtcatcttcatttaatacatttctacacttaaaaaaatttcatgaatattcctaaattaattactctttattccacca 33314479  T
Q  108 acttacttacttttaatattctctctcttaatcaataagagcacaaatgaaatttaacttcaaacataattaaaacttgatcaatcttcttataaaaagg 207  Q
    |||| |||||||||||||||||||||| |||| ||| || |||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||    
T  33314478 acttgcttacttttaatattctctctcataataaatgagggcacaaatgaaatttagcttcaaacatatttgaaacttgatcaatcttcttataaaaagg 33314379  T
Q  208 accnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagta 257  Q
    |||        |||||||||||||| ||||||||||||| ||||||||||    
T  33314378 accaaaaataatctcacttttgtttataataaaaaggactggagggagta 33314329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 16 - 258
Target Start/End: Original strand, 40385185 - 40385431
Alignment:
Q  16 atacattgaaaatagtcatcttcatttaatacgcttctacatttnnnnnnnt-tctatgaatacccttaaattaattactctttattccatcaacttact 114  Q
    |||||||||||||||||||||||||||||||| |||||||||||         || |||||||||| |||||||||| ||||||||||||  |||||| |    
T  40385185 atacattgaaaatagtcatcttcatttaatacacttctacatttaaaaaataatccatgaatacccctaaattaattcctctttattccactaacttatt 40385284  T
Q  115 tacttttaatattctctctcttaatcaataagagcacaaatgaaatttaacttcaaacataattaaaacttgatcaa---tcttcttataaaaaggaccn 211  Q
    |||||||||| ||||||||| |||| |||||| |||||||||||||||| ||||||||||| || ||||||| ||||   |||||||||||||||||||     
T  40385285 tacttttaattttctctctcataataaataagggcacaaatgaaatttagcttcaaacatacttgaaacttggtcaatcttcttcttataaaaaggacca 40385384  T
Q  212 nnnnnnttctcacttttgtttctaataaaaaggaccggagggagtac 258  Q
          ||||||||||||||||||||||||||||||||||| |||||    
T  40385385 aaaaaattctcacttttgtttctaataaaaaggaccggaggaagtac 40385431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 10 - 257
Target Start/End: Complemental strand, 24868715 - 24868467
Alignment:
Q  10 aagaaaatacattgaaaatagtcatcttcatttaatacgcttctacatttnnnnnnnttctatgaatacccttaaattaattactctttattccatcaac 109  Q
    |||||||||||||||||||||| ||||||||||||||| | |||| | ||       ||| || || |||| ||||||||||||||||||||||| ||||    
T  24868715 aagaaaatacattgaaaatagtaatcttcatttaatacacctctataattaagaaaattccattaacacccctaaattaattactctttattccaccaac 24868616  T
Q  110 ttacttacttttaatattctctctcttaatcaataagagcacaaatgaaatttaacttcaaacataattaaaacttgatcaat-cttcttataaaaagga 208  Q
    ||||||||||||||||||||||||| |||| |||||| | |||||||||||||||||||||||||| || ||||||| |||||  |||||||||||| ||    
T  24868615 ttacttacttttaatattctctctcataataaataagggtacaaatgaaatttaacttcaaacatacttgaaacttggtcaatatttcttataaaaaaga 24868516  T
Q  209 ccnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagta 257  Q
    |        ||||||||||||||||||||||||||||  ||||||||||    
T  24868515 caaaaaaaattctcacttttgtttctaataaaaaggatgggagggagta 24868467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 9 - 255
Target Start/End: Original strand, 41174604 - 41174851
Alignment:
Q  9 caagaaaatacattgaaaatagtcatcttcatttaatacgcttctacatttnnnnnnn--ttctatgaatacccttaaattaattactctttattccatc 106  Q
    |||| |||||||||||||||||||||||||||||||||  |||||| ||||         ||| |||||||||| | |||||||| ||||||||| ||      
T  41174604 caaggaaatacattgaaaatagtcatcttcatttaatatacttctatattttaaaaaaaattc-atgaatacccctcaattaattcctctttatttcact 41174702  T
Q  107 aacttacttacttttaatattctctctcttaatcaataagagcacaaatgaaatttaacttcaaacataattaaaacttgatcaatcttcttataaaaag 206  Q
    |||||| ||||||||||  ||||||||| |||| |||||| |||||||||||||||| ||| ||| ||| || ||||||| |||||||||||||||||||    
T  41174703 aacttatttacttttaactttctctctcataataaataagggcacaaatgaaatttagcttaaaatatacttgaaacttggtcaatcttcttataaaaag 41174802  T
Q  207 gaccnnnnnnnttctcacttttgtttctaataaaaaggaccggagggag 255  Q
    ||||       |||||||||||||||||| |||||||||||||||||||    
T  41174803 gaccaaaaaaattctcacttttgtttctattaaaaaggaccggagggag 41174851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 9 - 254
Target Start/End: Original strand, 3097491 - 3097741
Alignment:
Q  9 caagaaaatacattgaaaatagtcatcttcatttaatacgcttctacatttnnnnnnnt----tctatgaatacccttaaattaattactctttattcca 104  Q
    |||| |||||||||||||||||| ||||||||||||||| |||||||||||            || ||| |||||| |||||||| | ||||||||||||    
T  3097491 caaggaaatacattgaaaatagtaatcttcatttaatacacttctacatttaaaaaaaaaaaatccatgtatacccctaaattaaatcctctttattcca 3097590  T
Q  105 tcaacttacttacttttaatattctctctcttaatcaataagagcacaaatgaaatttaacttcaaacataattaaaacttgatcaatcttcttataaaa 204  Q
      |||||| ||||||||||| ||| ||||| |||| |||||| |||||||||||||||| ||||||||||| || ||||||| |||||||||||||||||    
T  3097591 ctaacttatttacttttaattttcactctcataataaataagggcacaaatgaaatttagcttcaaacatacttgaaacttggtcaatcttcttataaaa 3097690  T
Q  205 aggac-cnnnnnnnttctcacttttgtttctaataaaaaggaccggaggga 254  Q
    |||||          ||||||||||||||||||||||||||||||||||||    
T  3097691 aggacaaaaaaaaaatctcacttttgtttctaataaaaaggaccggaggga 3097741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 71 - 174
Target Start/End: Complemental strand, 4238039 - 4237936
Alignment:
Q  71 atgaatacccttaaattaattactctttattccatcaacttacttacttttaatattctctctcttaatcaataagagcacaaatgaaatttaacttcaa 170  Q
    |||||||||| |||||||||||||||| |||||| ||| ||||||  ||||| |||||| |||| |||| |||||  |||||||||||||||||||||||    
T  4238039 atgaatacccctaaattaattactcttgattccaccaatttacttcattttattattctatctcataataaataacggcacaaatgaaatttaacttcaa 4237940  T
Q  171 acat 174  Q
    ||||    
T  4237939 acat 4237936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 21262545 - 21262596
Alignment:
Q  8 ccaagaaaatacattgaaaatagtcatcttcatttaatacgcttctacattt 59  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21262545 ccaagaaaatacattgaaaatagtcatcttcatttaatacgcttctacattt 21262596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 82 - 209
Target Start/End: Original strand, 2934905 - 2935034
Alignment:
Q  82 taaattaattactctttattccatcaacttacttactttt-aatattctctctcttaatcaataagagcacaaatgaaatttaacttcaaacataattaa 180  Q
    ||||||||||||| || |||||  ||| ||| |||||||| ||||  ||||||| |||| |||||| | | |||||||||||||||||||| | | ||||    
T  2934905 taaattaattacttttgattccggcaatttatttactttttaataacctctctcataataaataagggtataaatgaaatttaacttcaaatacacttaa 2935004  T
Q  181 aacttgatcaatc-ttcttataaaaaggac 209  Q
    || ||| | |||| ||||||||||||||||    
T  2935005 aaattggtaaatctttcttataaaaaggac 2935034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 132; Significance: 2e-68; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 14 - 257
Target Start/End: Complemental strand, 1365890 - 1365645
Alignment:
Q  14 aaatacattgaaaatagtcatcttcatttaatacgcttctacatttnnnnnnn-ttctatgaatacccttaaattaattactctttattccatcaactta 112  Q
    |||||||||||||||||| |||||||||||||||   |||||||||        ||| |||||||||||||||||||||||||||||||||| |||||||    
T  1365890 aaatacattgaaaatagttatcttcatttaatacatctctacatttacaaaaaattccatgaatacccttaaattaattactctttattccaccaactta 1365791  T
Q  113 cttacttttaatattctctctcttaatcaataagagcacaaatgaaatttaacttcaaacataattaaaacttgatcaat-cttcttataaaaaggaccn 211  Q
    |||||||||||||||||||||| |||| |||||| |||||||||||||||| ||||||||||| || ||||||| |||||  |||||||||||||||||     
T  1365790 cttacttttaatattctctctcataataaataagggcacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttcttataaaaaggacca 1365691  T
Q  212 nnnnnnttctcacttttgtttctaataaaaaggaccggagggagta 257  Q
          ||||||||||||||||||||||||||||||||||||||||    
T  1365690 acaaaattctcacttttgtttctaataaaaaggaccggagggagta 1365645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 14 - 250
Target Start/End: Original strand, 7243365 - 7243602
Alignment:
Q  14 aaatacattgaaaatagtcatcttcatttaatacgcttctacatttnnnnnnnttctatgaatacccttaaattaattactctttattccatcaacttac 113  Q
    |||||||||||||||||| ||||||||||||||| | |||||||||        || |||||||||| ||||||||||| ||||||||||| ||||||||    
T  7243365 aaatacattgaaaatagttatcttcatttaatacacctctacatttaaaaaaaatccatgaatacccctaaattaattattctttattccaccaacttac 7243464  T
Q  114 ttacttttaatattctctctcttaatcaataagagcacaaatgaaatttaacttcaaacataattaaaacttgatcaat-cttcttataaaaaggaccnn 212  Q
    ||||||||||||||||||||| |||| |||||| |||||||||||||||||||||||||||| || ||||||| |||||  |||||||||||| ||||      
T  7243465 ttacttttaatattctctctcataataaataagggcacaaatgaaatttaacttcaaacatacttgaaacttggtcaatatttcttataaaaaagaccaa 7243564  T
Q  213 nnnnnttctcacttttgtttctaataaaaaggaccgga 250  Q
         ||||||||||||||| |||||||||||||||||    
T  7243565 aaaagttctcacttttgtttataataaaaaggaccgga 7243602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 8 - 257
Target Start/End: Original strand, 24337959 - 24338205
Alignment:
Q  8 ccaagaaaatacattgaaaatagtcatcttcatttaatacgcttctacatttnnnnnnnttctatgaatacccttaaattaattactctttattccatca 107  Q
    ||||| |||||||||||||||||| ||||||||||||    | |||||||||       ||| ||||||| || ||||||||||||||||||||||| ||    
T  24337959 ccaaggaaatacattgaaaatagttatcttcatttaa----cctctacatttaaaaaaattccatgaataaccctaaattaattactctttattccacca 24338054  T
Q  108 acttacttacttttaatattctctctcttaatcaataagagcacaaatgaaatttaacttcaaacataattaaaacttgatcaat-cttcttataaaaag 206  Q
    ||||||||||||||||||||||||||| |||| |||||| |||||||||||||||| ||||||||||| || ||||||| |||||  ||||||||||||     
T  24338055 acttacttacttttaatattctctctcataataaataagggcacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttcttataaaaaa 24338154  T
Q  207 gaccnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagta 257  Q
    ||||       ||||||||||||||||||||||||||||||||||||||||    
T  24338155 gaccaaaaaaattctcacttttgtttctaataaaaaggaccggagggagta 24338205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 106; Significance: 5e-53; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 14 - 257
Target Start/End: Complemental strand, 6949 - 6703
Alignment:
Q  14 aaatacattgaaaatagtcatcttcatttaatacgcttctacatttnnnnnnntt--ctatgaatacccttaaattaattactctttattccatcaactt 111  Q
    |||||||||||||||||| |||||||||||||||   |||||||||       ||  ||||||||| |||||||||||||||||||||||| | ||||||    
T  6949 aaatacattgaaaatagttatcttcatttaatacatctctacatttaatttttttttctatgaatatccttaaattaattactctttattctaccaactt 6850  T
Q  112 acttacttttaatattctctctcttaatcaataagagcacaaatgaaatttaacttcaaacataattaaaacttgatcaat-cttcttataaaaaggacc 210  Q
    |||||||||||||||||| |||| |||| |||||| |||||||||||||||| ||||||||||| || ||||||| |||||  |||||||||||| ||||    
T  6849 acttacttttaatattctttctcataataaataagcgcacaaatgaaatttagcttcaaacatacttgaaacttggtcaatatttcttataaaaatgacc 6750  T
Q  211 nnnnnnnttctcacttttgtttctaataaaaaggaccggagggagta 257  Q
           || | |||||||||||||||||||||||||||| ||||||    
T  6749 aaattttttttaacttttgtttctaataaaaaggaccggatggagta 6703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 8 - 257
Target Start/End: Original strand, 258268 - 258509
Alignment:
Q  8 ccaagaaaatacattgaaaatagtcatcttcatttaatacgcttctacatttnnnnnnnttctatgaatacccttaaattaattactctttattccatca 107  Q
    ||||| |||||||||||||||||| ||||||||||||||| | |||| ||||       ||| || || |||| |||||||||||||||          |    
T  258268 ccaaggaaatacattgaaaatagtaatcttcatttaatacacctctatatttaagaaaattccatcaacacccctaaattaattactcta---------a 258358  T
Q  108 acttacttacttttaatattctctctcttaatcaataagagcacaaatgaaatttaacttcaaacataattaaaacttgatcaat-cttcttataaaaag 206  Q
    ||||||||| ||||||||||||||||| |||| |||||  |||||||||||||||||||||||||||| |||||||||| |||||  |||||||||||||    
T  258359 acttacttaattttaatattctctctcataataaataaaggcacaaatgaaatttaacttcaaacatacttaaaacttggtcaatatttcttataaaaag 258458  T
Q  207 gaccnnnnnnnttctcacttttgtttctaataaaaaggaccggagggagta 257  Q
    ||||       ||||||||||||||||||||||||||||||||| ||||||    
T  258459 gacctaaaaaattctcacttttgtttctaataaaaaggaccggatggagta 258509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 71; Significance: 4e-32; HSPs: 2)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 14 - 173
Target Start/End: Complemental strand, 30654 - 30495
Alignment:
Q  14 aaatacattgaaaatagtcatcttcatttaatacgcttctacatttnnnnnnnttctatgaatacccttaaattaattactctttattccatcaacttac 113  Q
    |||||||||||||||||| || || ||||||||| | ||| |||||       ||| || ||||||| |||||||||||||||| |||||  ||||||||    
T  30654 aaatacattgaaaatagttattttaatttaatacacctctgcatttaaattttttccataaatacccctaaattaattactcttgattccgccaacttac 30555  T
Q  114 ttacttttaatattctctctcttaatcaataagagcacaaatgaaatttaacttcaaaca 173  Q
    |||||||||||||| |||||| |||| |||||| ||||||||||||||||| ||||||||    
T  30554 ttacttttaatattgtctctcataataaataagggcacaaatgaaatttaatttcaaaca 30495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 74 - 146
Target Start/End: Original strand, 30839 - 30907
Alignment:
Q  74 aatacccttaaattaattactctttattccatcaacttacttacttttaatattctctctcttaatcaataag 146  Q
    ||||||| |||||||||||||||| |||||| ||    || |||||||||||||||||||| |||| ||||||    
T  30839 aatacccctaaattaattactcttgattccacca----acatacttttaatattctctctcataataaataag 30907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University