View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3307_low_21 (Length: 345)
Name: NF3307_low_21
Description: NF3307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3307_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 319; Significance: 1e-180; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 5 - 335
Target Start/End: Original strand, 36531653 - 36531983
Alignment:
| Q |
5 |
cagtttggtgccccgaaaaaggttccaacgcaggatccaccaaaaccagcctgtaaaagtaatggtggaacatccgttggtagtggatgtgcagacactt |
104 |
Q |
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| T |
36531653 |
cagtttggtgccccgaaaaaggttccaacgcaggatccaccaaaaccagcctgtaaaagtaatggtggaacatccgttagtagtggatgtgcagacactt |
36531752 |
T |
|
| Q |
105 |
ttgtgccgtcgtatccttcgtgtatgaaaacatgtgctaatggagtcggtaagcaacataaagatgagaagagtaaggatggctttattcctgtgtccaa |
204 |
Q |
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| T |
36531753 |
ttgtgccgtcgtatccttcatgtatgaaaacatgtgctaatggagttggtaagcaacataaagatgagaagagtaaggatggctttattcctgtgtccaa |
36531852 |
T |
|
| Q |
205 |
gccaatgaagtcacaatcttcaaacaatgttggaagtaagagagtgagacaaccagaaccagattcaacagagagattcaacactggaaatgattatgaa |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36531853 |
gccaatgaagtcacaatcttcaaacaatgttggaagtaagagagtgagacaaccagaaccagattcaacagagagattcaacactggaaatgattatgaa |
36531952 |
T |
|
| Q |
305 |
aagaaaggtttcaatgttcgagaaaatgatg |
335 |
Q |
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| T |
36531953 |
aagaaaggtttcaatgttcgagaaaatgatg |
36531983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 7 - 329
Target Start/End: Complemental strand, 26305756 - 26305434
Alignment:
| Q |
7 |
gtttggtgccccgaaaaaggttccaacgcaggatccaccaaaaccagcctgtaaaagtaatggtggaacatccgttggtagtggatgtgcagacactttt |
106 |
Q |
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| T |
26305756 |
gtttcgtgcccggaaaaatgctcccatgcaggctccaccaaaagcggcctccaaaagtaatggtggaaaaccccttggtggtagatatgcagatgctttt |
26305657 |
T |
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| Q |
107 |
gtgccgtcgtatccttcgtgtatgaaaacatgtgctaatggagtcggtaagcaacataaagatgagaagagtaaggatggctttattcctgtgtccaagc |
206 |
Q |
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| T |
26305656 |
gtgcagtcatatccttcatgtatgaaaacctctgccgctggggttggtaagcaacttaatgatgaaaagagtaagtatggctatgttcccctgtccaaac |
26305557 |
T |
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| Q |
207 |
caatgaagtcacaatcttcaaacaatgttggaagtaagagagtgagacaaccagaaccagattcaacagagagattcaacactggaaatgattatgaaaa |
306 |
Q |
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| T |
26305556 |
caatggagtcacaggcctcaaaaagtgttggaaataagagagtgagagaacctgaaccagattcaaaagacagattcaacactggaattgatgatgaaaa |
26305457 |
T |
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| Q |
307 |
gaaaggtttcaatgttcgagaaa |
329 |
Q |
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| T |
26305456 |
gaaagatgtcaatgttcgagaaa |
26305434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 145 - 262
Target Start/End: Complemental strand, 20628470 - 20628353
Alignment:
| Q |
145 |
tggagtcggtaagcaacataaagatgagaagagtaaggatggctttattcctgtgtccaagccaatgaagtcacaatcttcaaacaatgttggaagtaag |
244 |
Q |
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| T |
20628470 |
tggagttggtaagcaacataaagatgaaaaaagtaaggatggctatgttcctgtgtccaaaccaatggagtcacaagcctcaaacagtgttggaagtaag |
20628371 |
T |
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| Q |
245 |
agagtgagacaaccagaa |
262 |
Q |
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| T |
20628370 |
agagtaagacaaccagaa |
20628353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 117 - 262
Target Start/End: Original strand, 36552935 - 36553080
Alignment:
| Q |
117 |
atccttcgtgtatgaaaacatgtgctaatggagtcggtaagcaacataaagatgagaagagtaaggatggctttattcctgtgtccaagccaatgaagtc |
216 |
Q |
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||||||| | ||||| ||||||| |||||||||| | ||||||||||| |||||| |||| |||||||||| | |||||||||||| |||| | |||| |
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| T |
36552935 |
atccttcatatatgagaacatgtcctaatggagttgctaagcaacatatagatgaagagagcaaggatggctatgttcctgtgtccagaccaacggagtc |
36553034 |
T |
|
| Q |
217 |
acaatcttcaaacaatgttggaagtaagagagtgagacaaccagaa |
262 |
Q |
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|||||| ||||||||||||||||| ||||||||||||||||||||| |
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| T |
36553035 |
acaatcctcaaacaatgttggaaggaagagagtgagacaaccagaa |
36553080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 36525330 - 36525396
Alignment:
| Q |
8 |
tttggtgccccgaaaaaggttccaacgcaggatccaccaaaaccagcctgtaaaagtaatggtggaa |
74 |
Q |
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||||||||||||||||||| || || ||||| ||| ||||||| ||||| |||||||||| |||||| |
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| T |
36525330 |
tttggtgccccgaaaaaggctcgaatgcaggctccgccaaaactagcctctaaaagtaatcgtggaa |
36525396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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