View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3307_low_22 (Length: 317)

Name: NF3307_low_22
Description: NF3307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3307_low_22
NF3307_low_22
[»] chr4 (8 HSPs)
chr4 (16-307)||(1460159-1460452)
chr4 (259-305)||(23564356-23564402)
chr4 (241-285)||(9928855-9928899)
chr4 (247-298)||(8837129-8837180)
chr4 (134-221)||(55240463-55240550)
chr4 (259-297)||(23564426-23564464)
chr4 (243-285)||(36165209-36165251)
chr4 (247-292)||(37927658-37927703)
[»] chr1 (2 HSPs)
chr1 (247-296)||(30602336-30602385)
chr1 (246-306)||(10645530-10645590)
[»] chr8 (3 HSPs)
chr8 (247-306)||(32884609-32884668)
chr8 (252-307)||(33199669-33199724)
chr8 (247-297)||(27461242-27461292)
[»] chr7 (3 HSPs)
chr7 (237-288)||(5473262-5473313)
chr7 (247-298)||(35035085-35035136)
chr7 (247-295)||(2912046-2912094)
[»] chr6 (2 HSPs)
chr6 (246-297)||(6728572-6728623)
chr6 (253-297)||(11339963-11340007)
[»] chr5 (4 HSPs)
chr5 (243-306)||(42193325-42193388)
chr5 (189-274)||(28432063-28432148)
chr5 (246-298)||(31540307-31540359)
chr5 (261-297)||(6423931-6423967)
[»] chr3 (6 HSPs)
chr3 (252-307)||(22312207-22312262)
chr3 (247-305)||(20995680-20995738)
chr3 (246-306)||(20982647-20982707)
chr3 (243-290)||(20982793-20982840)
chr3 (261-306)||(50197100-50197145)
chr3 (246-286)||(20995550-20995590)
[»] scaffold0557 (1 HSPs)
scaffold0557 (209-282)||(4594-4667)
[»] scaffold0549 (2 HSPs)
scaffold0549 (253-297)||(1062-1106)
scaffold0549 (253-297)||(3152-3196)
[»] chr2 (1 HSPs)
chr2 (252-289)||(36201868-36201905)


Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 16 - 307
Target Start/End: Original strand, 1460159 - 1460452
Alignment:
Q  16 aattgaacaaatttcttttgataaaaatatcttacctcatggaaagttactcctaaagtgggtccaatattttgcaaaaccacacacactag-tcatctt 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||    
T  1460159 aattgaacaaatttcttttgataaaaatatcttacctcatggaaagttactcctaaagtgggtccaatattttgcaaaaccacatacattaggtcatctt 1460258  T
Q  115 aaatatgttttgatctcat-ctttgagttagcttttgagatgagattcataactatttaaaattgtattagaattgagttaagaattgcaatataagaat 213  Q
    |||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||| | |||    
T  1460259 aaatatgtttggatctcattctttgagttagcttttgagatgagatccataactatttaaaattgtattagagttgagttaagaattgtaatatgaaaat 1460358  T
Q  214 tggactcagacccacattaggtatgaagatggatgttcaagttggttttgaggttgtttgtagtttgttatttgtctcacattgcacaggttct 307  Q
    |||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||    
T  1460359 tggactcagacctacattaggtatgaagatgggtgttcaagttggttttgaagttgtttgtagtttgttatttgtctcacattgctcaggttct 1460452  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 305
Target Start/End: Complemental strand, 23564402 - 23564356
Alignment:
Q  259 ttttgaggttgtttgtagtttgttatttgtctcacattgcacaggtt 305  Q
    |||||| |||||||||||||||||||||||| |||||||| ||||||    
T  23564402 ttttgaagttgtttgtagtttgttatttgtcccacattgctcaggtt 23564356  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 285
Target Start/End: Complemental strand, 9928899 - 9928855
Alignment:
Q  241 gatggatgttcaagttggttttgaggttgtttgtagtttgttatt 285  Q
    |||||||||| ||||| ||||||| ||||||||||||||||||||    
T  9928899 gatggatgttgaagttagttttgaagttgtttgtagtttgttatt 9928855  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 247 - 298
Target Start/End: Complemental strand, 8837180 - 8837129
Alignment:
Q  247 tgttcaagttggttttgaggttgtttgtagtttgttatttgtctcacattgc 298  Q
    |||| |||| |||||||| ||| |||||||| ||||||||||||||||||||    
T  8837180 tgttgaagtcggttttgaagttatttgtagtatgttatttgtctcacattgc 8837129  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 134 - 221
Target Start/End: Original strand, 55240463 - 55240550
Alignment:
Q  134 ctttgagttagcttttgagatgagattcataactatttaaaattgtattagaattgagttaagaattgcaatataagaattggactca 221  Q
    ||||||||||||||||| |||||||||||   | |||||| || |||||||| | | |||||  |||||||| || ||||||||||||    
T  55240463 ctttgagttagcttttgggatgagattcaagccaatttaacatggtattagagtcgggttaaagattgcaatgtaggaattggactca 55240550  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 297
Target Start/End: Complemental strand, 23564464 - 23564426
Alignment:
Q  259 ttttgaggttgtttgtagtttgttatttgtctcacattg 297  Q
    |||||| |||||||||||||||||||||||| |||||||    
T  23564464 ttttgaagttgtttgtagtttgttatttgtcccacattg 23564426  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 285
Target Start/End: Complemental strand, 36165251 - 36165209
Alignment:
Q  243 tggatgttcaagttggttttgaggttgtttgtagtttgttatt 285  Q
    |||||||| |||||||||||||  |||||||||||||||||||    
T  36165251 tggatgttgaagttggttttgaaattgtttgtagtttgttatt 36165209  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 292
Target Start/End: Original strand, 37927658 - 37927703
Alignment:
Q  247 tgttcaagttggttttgaggttgtttgtagtttgttatttgtctca 292  Q
    |||| ||||| ||||||| |||||||||||||||||||| ||||||    
T  37927658 tgttgaagttagttttgaagttgtttgtagtttgttattagtctca 37927703  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 247 - 296
Target Start/End: Original strand, 30602336 - 30602385
Alignment:
Q  247 tgttcaagttggttttgaggttgtttgtagtttgttatttgtctcacatt 296  Q
    |||| ||||||||||||| ||||||||||||||||||||||| |||||||    
T  30602336 tgttgaagttggttttgaagttgtttgtagtttgttatttgtttcacatt 30602385  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 246 - 306
Target Start/End: Original strand, 10645530 - 10645590
Alignment:
Q  246 atgttcaagttggttttgaggttgtttgtagtttgttatttgtctcacattgcacaggttc 306  Q
    ||||| ||| ||||||||||||||||||||||||||| |||||| ||||| || |||||||    
T  10645530 atgttgaagctggttttgaggttgtttgtagtttgttgtttgtcccacatcgctcaggttc 10645590  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 247 - 306
Target Start/End: Complemental strand, 32884668 - 32884609
Alignment:
Q  247 tgttcaagttggttttgaggttgtttgtagtttgttatttgtctcacattgcacaggttc 306  Q
    |||| |||||||||||||   |||| |||||||||||||||||||||||||| |||||||    
T  32884668 tgttgaagttggttttgaaaatgttcgtagtttgttatttgtctcacattgctcaggttc 32884609  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 252 - 307
Target Start/End: Original strand, 33199669 - 33199724
Alignment:
Q  252 aagttggttttgaggttgtttgtagtttgttatttgtctcacattgcacaggttct 307  Q
    ||||||||||||| ||||| |||| |||||||||||||| ||| ||| ||||||||    
T  33199669 aagttggttttgaagttgtctgtattttgttatttgtcttacactgctcaggttct 33199724  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 297
Target Start/End: Original strand, 27461242 - 27461292
Alignment:
Q  247 tgttcaagttggttttgaggttgtttgtagtttgttatttgtctcacattg 297  Q
    |||| ||||||||||||| ||||| ||||||||||||| |||| |||||||    
T  27461242 tgttgaagttggttttgaagttgtatgtagtttgttatctgtcccacattg 27461292  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 237 - 288
Target Start/End: Original strand, 5473262 - 5473313
Alignment:
Q  237 tgaagatggatgttcaagttggttttgaggttgtttgtagtttgttatttgt 288  Q
    ||||| ||| |||| ||||||||||||| |||||||||||||||||||||||    
T  5473262 tgaaggtgggtgttgaagttggttttgaagttgtttgtagtttgttatttgt 5473313  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 247 - 298
Target Start/End: Complemental strand, 35035136 - 35035085
Alignment:
Q  247 tgttcaagttggttttgaggttgtttgtagtttgttatttgtctcacattgc 298  Q
    |||| |||||| |||||| ||||||| || ||||||||||||||||||||||    
T  35035136 tgttgaagttgattttgaagttgtttataatttgttatttgtctcacattgc 35035085  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 247 - 295
Target Start/End: Complemental strand, 2912094 - 2912046
Alignment:
Q  247 tgttcaagttggttttgaggttgtttgtagtttgttatttgtctcacat 295  Q
    |||| ||||||| ||||  |||||||||||||||||||||||| |||||    
T  2912094 tgttgaagttggctttggagttgtttgtagtttgttatttgtcccacat 2912046  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 246 - 297
Target Start/End: Original strand, 6728572 - 6728623
Alignment:
Q  246 atgttcaagttggttttgaggttgtttgtagtttgttatttgtctcacattg 297  Q
    ||||| ||||||||||| | ||||||| ||||||||||||||||||||||||    
T  6728572 atgttgaagttggttttaaagttgtttatagtttgttatttgtctcacattg 6728623  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 297
Target Start/End: Original strand, 11339963 - 11340007
Alignment:
Q  253 agttggttttgaggttgtttgtagtttgttatttgtctcacattg 297  Q
    |||||||||| | ||||||||||||||||||||||||| ||||||    
T  11339963 agttggttttaaagttgtttgtagtttgttatttgtcttacattg 11340007  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 243 - 306
Target Start/End: Complemental strand, 42193388 - 42193325
Alignment:
Q  243 tggatgttcaagttggttttgaggttgtttgtagtttgttatttgtctcacattgcacaggttc 306  Q
    |||||||| |||| | |||||| |||| |||||| ||||||||||||||||||||| |||||||    
T  42193388 tggatgttgaagtcgattttgaagttgcttgtagattgttatttgtctcacattgctcaggttc 42193325  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 189 - 274
Target Start/End: Complemental strand, 28432148 - 28432063
Alignment:
Q  189 gagttaagaattgcaatataagaattggactcagacccacattaggtatgaagatggatgttcaagttggttttgaggttgtttgt 274  Q
    ||||||||||||||||| |  ||||||||| |||||||||| |||| | || | ||| || | ||||||||||||| |||||||||    
T  28432148 gagttaagaattgcaatgtgggaattggacccagacccacactaggcaagagggtgggtgctgaagttggttttgatgttgtttgt 28432063  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 298
Target Start/End: Complemental strand, 31540359 - 31540307
Alignment:
Q  246 atgttcaagttggttttgaggttgtttgtagtttgttatttgtctcacattgc 298  Q
    ||||| ||||||||||||| |||||||||||||||||  | ||||||||||||    
T  31540359 atgttgaagttggttttgaagttgtttgtagtttgtttctagtctcacattgc 31540307  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 261 - 297
Target Start/End: Original strand, 6423931 - 6423967
Alignment:
Q  261 ttgaggttgtttgtagtttgttatttgtctcacattg 297  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  6423931 ttgaagttgtctgtagtttgttatttgtctcacattg 6423967  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 252 - 307
Target Start/End: Original strand, 22312207 - 22312262
Alignment:
Q  252 aagttggttttgaggttgtttgtagtttgttatttgtctcacattgcacaggttct 307  Q
    ||||||||||||| |||||||||||||||||||| |||||||| ||| ||| ||||    
T  22312207 aagttggttttgaagttgtttgtagtttgttattagtctcacaatgctcagtttct 22312262  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 247 - 305
Target Start/End: Original strand, 20995680 - 20995738
Alignment:
Q  247 tgttcaagttggttttgaggttgtttgtagtttgttatttgtctcacattgcacaggtt 305  Q
    |||| ||||| ||||||| ||||||| ||| |||||||| |||||||||||||||||||    
T  20995680 tgttgaagttagttttgaagttgtttataggttgttattcgtctcacattgcacaggtt 20995738  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 306
Target Start/End: Complemental strand, 20982707 - 20982647
Alignment:
Q  246 atgttcaagttggttttgaggttgtttgtagtttgttatttgtctcacattgcacaggttc 306  Q
    ||||| ||||||||||| | ||||||||||||||||||||| ||  ||||||| |||||||    
T  20982707 atgttgaagttggttttaaagttgtttgtagtttgttatttatcctacattgctcaggttc 20982647  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 243 - 290
Target Start/End: Original strand, 20982793 - 20982840
Alignment:
Q  243 tggatgttcaagttggttttgaggttgtttgtagtttgttatttgtct 290  Q
    |||||||| ||||| ||||| | |||||||||||||||||||||||||    
T  20982793 tggatgttgaagttagttttaaagttgtttgtagtttgttatttgtct 20982840  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 306
Target Start/End: Original strand, 50197100 - 50197145
Alignment:
Q  261 ttgaggttgtttgtagtttgttatttgtctcacattgcacaggttc 306  Q
    |||| ||||||| |||||||||||||||| |||||||| |||||||    
T  50197100 ttgaagttgtttatagtttgttatttgtcccacattgctcaggttc 50197145  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 286
Target Start/End: Complemental strand, 20995590 - 20995550
Alignment:
Q  246 atgttcaagttggttttgaggttgtttgtagtttgttattt 286  Q
    ||||| ||||||||||| | |||||||||||||||||||||    
T  20995590 atgttgaagttggttttaaagttgtttgtagtttgttattt 20995550  T

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Target: scaffold0557 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0557
Description:

Target: scaffold0557; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 209 - 282
Target Start/End: Original strand, 4594 - 4667
Alignment:
Q  209 agaattggactcagacccacattaggtatgaagatggatgttcaagttggttttgaggttgtttgtagtttgtt 282  Q
    |||||||||| |||||||||  || | |||| | | |||||| ||||||||||||| |||||||||||||||||    
T  4594 agaattggacccagacccacgctaagcatgagggttgatgttgaagttggttttgaagttgtttgtagtttgtt 4667  T

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Target: scaffold0549 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0549
Description:

Target: scaffold0549; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 297
Target Start/End: Original strand, 1062 - 1106
Alignment:
Q  253 agttggttttgaggttgtttgtagtttgttatttgtctcacattg 297  Q
    |||||||||| | ||||||||||||||||||||||||| ||||||    
T  1062 agttggttttaaagttgtttgtagtttgttatttgtcttacattg 1106  T

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Target: scaffold0549; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 297
Target Start/End: Original strand, 3152 - 3196
Alignment:
Q  253 agttggttttgaggttgtttgtagtttgttatttgtctcacattg 297  Q
    |||||||||| | ||||||||||||||||||||||||| ||||||    
T  3152 agttggttttaaagttgtttgtagtttgttatttgtcttacattg 3196  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 289
Target Start/End: Original strand, 36201868 - 36201905
Alignment:
Q  252 aagttggttttgaggttgtttgtagtttgttatttgtc 289  Q
    ||||||||||||| ||||||| ||||||||||||||||    
T  36201868 aagttggttttgaagttgtttatagtttgttatttgtc 36201905  T

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