View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3307_low_34 (Length: 253)
Name: NF3307_low_34
Description: NF3307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3307_low_34 |
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Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 10133058 - 10132812
Alignment:
| Q |
1 |
tcttgatgctatagtatatatatgatttaaattttgaaatttatgctttcatgtgtttatatgcatgactctggaacttgcatatttttcaatactttaa |
100 |
Q |
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|||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10133058 |
tcttgatgctatggtatatatatgatttaaaatttgaaatttatgctttcatgtgtttatatgcatgactctggaacttgcatatttttcaatactttaa |
10132959 |
T |
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| Q |
101 |
gaataggttaggaatttcacatgagannnnnnnggttaaacatgttattactttattggggtaaagtattactgtctgtttttgccacctttagtagtta |
200 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
10132958 |
gaataggttaggaatttcacatgagatttttttggttaaacatgttattactttattggggtaaagtattacagtctgtttttgccacctttagtagtta |
10132859 |
T |
|
| Q |
201 |
ttatgctcggaactatgactgaccatctttagtggagtctctgctcc |
247 |
Q |
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||||||| ||||||||||||||||||||||||||| |||||||||| |
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| T |
10132858 |
ctatgctcagaactatgactgaccatctttagtggaatctctgctcc |
10132812 |
T |
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