View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3307_low_35 (Length: 250)
Name: NF3307_low_35
Description: NF3307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3307_low_35 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 4972839 - 4972597
Alignment:
| Q |
1 |
tggtcttgacttgcttgctttccatcatgtgaaggatccgaggcagaaggcaacggtgtatgtgactgattttgtttcttattcgcatctggaacagctg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4972839 |
tggtcttgacttgcttgctttccatcatgtgaaggatccgaggcagaaggcaacggtgtatgtgactgattttgtttcttattcgcatctggaacagctg |
4972740 |
T |
|
| Q |
101 |
gaaaagatccactactaatgctaattggaaggttactgaaatctgttttaggtccaccactataaggtgcggctggaaggttattcgattgatcgagtaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4972739 |
gaaaagatccactactaatgctaattggaaggttactgaaatctgttttaggtccaccactataaggtgcggctggaaggttattcgattgatcgagtaa |
4972640 |
T |
|
| Q |
201 |
cttacgatgcgcataattgattagatttggcatgttcatctca |
243 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
4972639 |
cttacgacgcgcataattgattagatttggcatgttcatctca |
4972597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 4990747 - 4990505
Alignment:
| Q |
1 |
tggtcttgacttgcttgctttccatcatgtgaaggatccgaggcagaaggcaacggtgtatgtgactgattttgtttcttattcgcatctggaacagctg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4990747 |
tggtcttgacttgcttgctttccatcatgtgaaggatccgaggcagaaggcaacggtgtatgtgactgattttgtttcttattcgcatctggaacagctg |
4990648 |
T |
|
| Q |
101 |
gaaaagatccactactaatgctaattggaaggttactgaaatctgttttaggtccaccactataaggtgcggctggaaggttattcgattgatcgagtaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4990647 |
gaaaagatccactactaatgctaattggaaggttactgaaatctgttttaggtccaccactataaggtgcggctggaaggttattcgattgatcgagtaa |
4990548 |
T |
|
| Q |
201 |
cttacgatgcgcataattgattagatttggcatgttcatctca |
243 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
4990547 |
cttacgacgcgcataattgattagatttggcatgttcatctca |
4990505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 67 - 229
Target Start/End: Original strand, 35833262 - 35833424
Alignment:
| Q |
67 |
tgattttgtttcttattcgcatctggaacagctggaaaagatccactactaatgctaattggaaggttactgaaatctgttttaggtccaccactataag |
166 |
Q |
| |
|
||||||||||||||||| |||||||| ||||| || |||||||||||||| || |||||||| ||||| | | | |||||||||| ||||||| |
|
|
| T |
35833262 |
tgattttgtttcttattggcatctggcacagccgggaaagatccactacttattgaaattggaataacactgatctgtatagtaggtccaccgctataag |
35833361 |
T |
|
| Q |
167 |
gtgcggctggaaggttattcgattgatcgagtaacttacgatgcgcataattgattagatttg |
229 |
Q |
| |
|
|||| |||| ||||||||| || ||||| || ||||||||| | ||| || |||||||||||| |
|
|
| T |
35833362 |
gtgcagctgcaaggttattggactgatcaagcaacttacgacgtgcagaactgattagatttg |
35833424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University