View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3307_low_4 (Length: 601)
Name: NF3307_low_4
Description: NF3307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3307_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 531; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 531; E-Value: 0
Query Start/End: Original strand, 3 - 585
Target Start/End: Complemental strand, 34756069 - 34755487
Alignment:
| Q |
3 |
aatcaaaggcacttcgccatcttcctaatccaccaagccctaaaccacgtcttccattcataggtcatcttcaccttttggataaccctcttcttcacca |
102 |
Q |
| |
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|||||||||| |||||||| ||||| ||||| || || || ||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||| |
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| T |
34756069 |
aatcaaaggctcttcgccaccttcccaatcctccgagtcccaaacctcgtcttccatccattggtcatcttcaccttttggataaccctcttcttcacca |
34755970 |
T |
|
| Q |
103 |
cactcttatcaagttaggagaacgttatggccctttgtacactctttactttggttccatgcctaccattgttgcctcgacccctgacttgtttaaactt |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
34755969 |
cactcttatcaagttaggagaacgttatggccctttgtacactctttactttggttccatgcctaccattgttgcctcaacccctgacttgtttaaactt |
34755870 |
T |
|
| Q |
203 |
ttccttcaaacccatgaagctacttcctttaacacaaggttccaaacctctgctattagtcgtcttacctatgacaactctgttgctatggttccatttg |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34755869 |
ttccttcaaacccatgaagctacttcctttaacacaaggttccaaacctctgctattagtcgtcttacctatgacaactctgttgctatggttccatttg |
34755770 |
T |
|
| Q |
303 |
gaccttactggaagtttattagaaagcttatcatgaacgacctgctcaacgccaccactattaacaagttgaggccattgaggagtcgagagatccgtaa |
402 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
34755769 |
gaccttactggaagtttattagaaagcttatcatgaacgacctgctcaacgccaccactattaacaagttgaggccattgaggagccgagagatccgtaa |
34755670 |
T |
|
| Q |
403 |
ggttcttaaggtcatggctaatagtgctgaaactcaacagccacttaatgtcactgaggagcttctcaagtggacaaacagcacaatctctacgatgatg |
502 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34755669 |
ggttcttaaggtcatggctaatagtgctgaaactcaacagccacttaatgtcactgaggagcttctcaagtggacaaacagcacaatctctacgatgatg |
34755570 |
T |
|
| Q |
503 |
ttgggtgaggctgaagaggttagagatattgctcgcgatgttcttgagatctttggagaatatagtgttacaaacttcatatg |
585 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34755569 |
ttgggtgaggccgaagaggttagagatattgctcgcgatgttcttgagatctttggagaatatagtgttacaaacttcatatg |
34755487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 3 - 579
Target Start/End: Original strand, 34780067 - 34780643
Alignment:
| Q |
3 |
aatcaaaggcacttcgccatcttcctaatccaccaagccctaaaccacgtcttccattcataggtcatcttcaccttttggataaccctcttcttcacca |
102 |
Q |
| |
|
|||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
34780067 |
aatcaaaggctcttcgccaccttccaaatccaccaagccctaaaccacgtcttccattcataggtcatcttcaccttttggataacccacttcttcacca |
34780166 |
T |
|
| Q |
103 |
cactcttatcaagttaggagaacgttatggccctttgtacactctttactttggttccatgcctaccattgttgcctcgacccctgacttgtttaaactt |
202 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||||| || || |||||||||||||||||| |
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| T |
34780167 |
cactcttatcaagttaggaaagcgttatggccctttgtacactctttactttggttccatgcctaccgttgttgcatccactcctgacttgtttaaactt |
34780266 |
T |
|
| Q |
203 |
ttccttcaaacccatgaagctacttcctttaacacaaggttccaaacctctgctattagtcgtcttacctatgacaactctgttgctatggttccatttg |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |
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|
| T |
34780267 |
ttccttcaaacccatgaagctacttcctttaacacaagattccaaacctctgctattagtcgtcttacctatgataattctgttgctatggttccatttg |
34780366 |
T |
|
| Q |
303 |
gaccttactggaagtttattagaaagcttatcatgaacgacctgctcaacgccaccactattaacaagttgaggccattgaggagtcgagagatccgtaa |
402 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||||| ||||| |||| ||| |
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|
| T |
34780367 |
caccttattggaagtttattagaaagcttatcatgaacgacttgctcaacgccaccactgttaacaaattgaggccattgaggagccgagaaatccttaa |
34780466 |
T |
|
| Q |
403 |
ggttcttaaggtcatggctaatagtgctgaaactcaacagccacttaatgtcactgaggagcttctcaagtggacaaacagcacaatctctacgatgatg |
502 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
34780467 |
ggttcttaaggtcatggctaatagtgctgaaactcaacagccacttgatgtcactgaggagcttctcaagtggacaaacagcacaatctctaccatgatg |
34780566 |
T |
|
| Q |
503 |
ttgggtgaggctgaagaggttagagatattgctcgcgatgttcttgagatctttggagaatatagtgttacaaactt |
579 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
34780567 |
ttgggtgaggccgaagaggttagagatattgctcgtgatgttcttaagatctttggagaatatagtgttacaaactt |
34780643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 3 - 579
Target Start/End: Complemental strand, 34764045 - 34763469
Alignment:
| Q |
3 |
aatcaaaggcacttcgccatcttcctaatccaccaagccctaaaccacgtcttccattcataggtcatcttcaccttttggataaccctcttcttcacca |
102 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||| ||||||||||| |
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|
| T |
34764045 |
aatcaaaggcacttcgccatcttccaaatccaccaagccctaaaccacgtcttcctttcattggtcatcttcatcttttggataacccacttcttcacca |
34763946 |
T |
|
| Q |
103 |
cactcttatcaagttaggagaacgttatggccctttgtacactctttactttggttccatgcctaccattgttgcctcgacccctgacttgtttaaactt |
202 |
Q |
| |
|
||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||| ||||||| || || |||||||||||||||||| |
|
|
| T |
34763945 |
cactcttatcaagttaggaaagcgttatggacctttgtacactctttactttggttccatgcctaccgttgttgcatccactcctgacttgtttaaactt |
34763846 |
T |
|
| Q |
203 |
ttccttcaaacccatgaagctacttcctttaacacaaggttccaaacctctgctattagtcgtcttacctatgacaactctgttgctatggttccatttg |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |
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|
| T |
34763845 |
ttccttcaaacccatgaagctacttcctttaacacaagattccaaacctctgctattagtcgtcttacctatgaaaaatctgttgctatggttccatttg |
34763746 |
T |
|
| Q |
303 |
gaccttactggaagtttattagaaagcttatcatgaacgacctgctcaacgccaccactattaacaagttgaggccattgaggagtcgagagatccgtaa |
402 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||||| ||||| |||| ||| |
|
|
| T |
34763745 |
caccttattggaagtttattagaaagcttatcatgaacgacttgctcaacgccaccactgttaacaaattgaggccattgaggagccgagaaatccttaa |
34763646 |
T |
|
| Q |
403 |
ggttcttaaggtcatggctaatagtgctgaaactcaacagccacttaatgtcactgaggagcttctcaagtggacaaacagcacaatctctacgatgatg |
502 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
34763645 |
ggttcttaaggtcatggctaatagtgctgaaactcaacagccacttgatgtcactgaggagcttctcaagtggacaaacagcacaatctctaccatgatg |
34763546 |
T |
|
| Q |
503 |
ttgggtgaggctgaagaggttagagatattgctcgcgatgttcttgagatctttggagaatatagtgttacaaactt |
579 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
34763545 |
ttgggtgaggccgaagaggttagagatattgctcgtgatgttcttaagatctttggagaatatagtgttacaaactt |
34763469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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