View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3307_low_43 (Length: 215)

Name: NF3307_low_43
Description: NF3307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3307_low_43
NF3307_low_43
[»] chr4 (2 HSPs)
chr4 (104-208)||(19964724-19964828)
chr4 (4-114)||(4231709-4231819)
[»] chr2 (3 HSPs)
chr2 (4-141)||(33861051-33861188)
chr2 (61-114)||(34691069-34691122)
chr2 (61-114)||(34713481-34713534)
[»] chr8 (1 HSPs)
chr8 (4-178)||(1846570-1846744)
[»] chr1 (10 HSPs)
chr1 (4-178)||(7890977-7891151)
chr1 (4-114)||(43045236-43045346)
chr1 (4-114)||(43045689-43045799)
chr1 (4-114)||(43066608-43066718)
chr1 (4-114)||(43084117-43084227)
chr1 (4-114)||(45993425-45993535)
chr1 (68-141)||(45983703-45983776)
chr1 (4-168)||(7888712-7888876)
chr1 (4-114)||(3300972-3301082)
chr1 (45-141)||(38137834-38137930)
[»] chr5 (1 HSPs)
chr5 (4-113)||(16349382-16349491)
[»] chr6 (1 HSPs)
chr6 (4-98)||(7519652-7519746)


Alignment Details
Target: chr4 (Bit Score: 97; Significance: 8e-48; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 104 - 208
Target Start/End: Original strand, 19964724 - 19964828
Alignment:
Q  104 ctcttggtgtgcctcgaatgatttgctgcatcaacaagatggatgccacaacacctacatactccatggataggtttctagaaattaaaaggatacttca 203  Q
    ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19964724 ctcttcgtgtgcctccaatgatttgctgcatcaacaagatggatgccacaacacctacatactccatggataggtttctagaaattaaaaggatacttca 19964823  T
Q  204 tctct 208  Q
    |||||    
T  19964824 tctct 19964828  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 114
Target Start/End: Complemental strand, 4231819 - 4231709
Alignment:
Q  4 gctgattgtgctcttcttatcgtcgattctactcctggtgcttttgaaaatggtttttctaaggatggtcggacccgtgaacatgctcttcttgcctccg 103  Q
    |||||||||||| |||| ||| | ||||| ||  |||||| |||||||  |||| |||| |||||||||| ||| |||||||||||||| ||||| | |     
T  4231819 gctgattgtgctgttctcatcattgattccaccactggtggttttgaagctggtatttccaaggatggtcagactcgtgaacatgctctccttgctttca 4231720  T
Q  104 ctcttggtgtg 114  Q
    |||||||||||    
T  4231719 ctcttggtgtg 4231709  T

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Target: chr2 (Bit Score: 78; Significance: 2e-36; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 4 - 141
Target Start/End: Complemental strand, 33861188 - 33861051
Alignment:
Q  4 gctgattgtgctcttcttatcgtcgattctactcctggtgcttttgaaaatggtttttctaaggatggtcggacccgtgaacatgctcttcttgcctccg 103  Q
    |||||||| |||||||||||||| |||||  ||||||||| |||||||  ||||||||||||| |||||| ||||||||||||||| ||||| |||| |     
T  33861188 gctgattgcgctcttcttatcgttgattcctctcctggtggttttgaagttggtttttctaagcatggtcagacccgtgaacatgcccttctcgcctgca 33861089  T
Q  104 ctcttggtgtgcctcgaatgatttgctgcatcaacaag 141  Q
    ||||||||||||||| |||||| |||||||||||||||    
T  33861088 ctcttggtgtgcctcaaatgatctgctgcatcaacaag 33861051  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 61 - 114
Target Start/End: Complemental strand, 34691122 - 34691069
Alignment:
Q  61 tctaaggatggtcggacccgtgaacatgctcttcttgcctccgctcttggtgtg 114  Q
    |||||| |||||| |||| | ||||||||||||||||||| | |||||||||||    
T  34691122 tctaagaatggtcagacctgggaacatgctcttcttgccttcactcttggtgtg 34691069  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 61 - 114
Target Start/End: Complemental strand, 34713534 - 34713481
Alignment:
Q  61 tctaaggatggtcggacccgtgaacatgctcttcttgcctccgctcttggtgtg 114  Q
    |||||| |||||| |||| | ||||||||||||||||||| | |||||||||||    
T  34713534 tctaagaatggtcagacctgggaacatgctcttcttgccttcactcttggtgtg 34713481  T

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Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 4 - 178
Target Start/End: Complemental strand, 1846744 - 1846570
Alignment:
Q  4 gctgattgtgctcttcttatcgtcgattctactcctggtgcttttgaaaatggtttttctaaggatggtcggacccgtgaacatgctcttcttgcctccg 103  Q
    ||||| |||||  |||||||| | || ||||| ||||||| |||||||  |||||||| |||| |||||| ||||  |||||||| ||  ||||||| ||    
T  1846744 gctgactgtgccgttcttatcattgactctacacctggtggttttgaagctggtttttgtaagaatggtcagaccaatgaacatgttcaacttgcctacg 1846645  T
Q  104 ctcttggtgtgcctcgaatgatttgctgcatcaacaagatggatgccacaacacctacatactccatggataggt 178  Q
    ||||||||||  | | |||||| ||||||   ||||||||||||||||| ||||| | |||||||| ||||||||    
T  1846644 ctcttggtgtttcacaaatgatctgctgctgtaacaagatggatgccactacacccaaatactccaaggataggt 1846570  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 178
Target Start/End: Original strand, 7890977 - 7891151
Alignment:
Q  4 gctgattgtgctcttcttatcgtcgattctactcctggtgcttttgaaaatggtttttctaaggatggtcggacccgtgaacatgctcttcttgcctccg 103  Q
    ||||| |||||| |||||||| | |||||||| | ||||| ||||||   |||||||| |||| |||||| ||||  |||||||| ||  ||||| | ||    
T  7890977 gctgactgtgctgttcttatcattgattctacacttggtggttttgacgctggtttttgtaagaatggtcagaccactgaacatgttcaacttgcattcg 7891076  T
Q  104 ctcttggtgtgcctcgaatgatttgctgcatcaacaagatggatgccacaacacctacatactccatggataggt 178  Q
    ||||||||||  | | |||||| |||||    ||||||||||||||||| ||||| | |||||||| ||||||||    
T  7891077 ctcttggtgtttcacaaatgatctgctgttgtaacaagatggatgccactacacccaaatactccaaggataggt 7891151  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 114
Target Start/End: Complemental strand, 43045346 - 43045236
Alignment:
Q  4 gctgattgtgctcttcttatcgtcgattctactcctggtgcttttgaaaatggtttttctaaggatggtcggacccgtgaacatgctcttcttgcctccg 103  Q
    |||||||||||  |||| ||| | ||||| ||| |||||| |||||||   ||| ||||||||||||||| |||||||||||||||||| ||||| | |     
T  43045346 gctgattgtgccgttctcatcattgattccactactggtggttttgaagccggtatttctaaggatggtcagacccgtgaacatgctctccttgctttca 43045247  T
Q  104 ctcttggtgtg 114  Q
    |||||||||||    
T  43045246 ctcttggtgtg 43045236  T

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Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 114
Target Start/End: Complemental strand, 43045799 - 43045689
Alignment:
Q  4 gctgattgtgctcttcttatcgtcgattctactcctggtgcttttgaaaatggtttttctaaggatggtcggacccgtgaacatgctcttcttgcctccg 103  Q
    |||||||||||  |||| ||| | ||||| ||| |||||| |||||||   ||| ||||||||||||||| |||||||||||||||||| ||||| | |     
T  43045799 gctgattgtgccgttctcatcattgattccactactggtggttttgaagccggtatttctaaggatggtcagacccgtgaacatgctctccttgctttca 43045700  T
Q  104 ctcttggtgtg 114  Q
    |||||||||||    
T  43045699 ctcttggtgtg 43045689  T

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Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 114
Target Start/End: Original strand, 43066608 - 43066718
Alignment:
Q  4 gctgattgtgctcttcttatcgtcgattctactcctggtgcttttgaaaatggtttttctaaggatggtcggacccgtgaacatgctcttcttgcctccg 103  Q
    |||||||||||  |||| ||| | ||||| ||| |||||| |||||||   ||| ||||||||||||||| |||||||||||||||||| ||||| | |     
T  43066608 gctgattgtgccgttctcatcattgattccactactggtggttttgaagccggtatttctaaggatggtcagacccgtgaacatgctctccttgctttca 43066707  T
Q  104 ctcttggtgtg 114  Q
    |||||||||||    
T  43066708 ctcttggtgtg 43066718  T

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Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 114
Target Start/End: Complemental strand, 43084227 - 43084117
Alignment:
Q  4 gctgattgtgctcttcttatcgtcgattctactcctggtgcttttgaaaatggtttttctaaggatggtcggacccgtgaacatgctcttcttgcctccg 103  Q
    |||||||||||  |||| ||| | ||||| ||| |||||| |||||||   ||| ||||||||||||||| |||||||||||||||||| ||||| | |     
T  43084227 gctgattgtgccgttctcatcattgattccactactggtggttttgaagccggtatttctaaggatggtcagacccgtgaacatgctctccttgctttca 43084128  T
Q  104 ctcttggtgtg 114  Q
    |||||||||||    
T  43084127 ctcttggtgtg 43084117  T

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Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 114
Target Start/End: Original strand, 45993425 - 45993535
Alignment:
Q  4 gctgattgtgctcttcttatcgtcgattctactcctggtgcttttgaaaatggtttttctaaggatggtcggacccgtgaacatgctcttcttgcctccg 103  Q
    |||||||||||| |||| ||| | ||||| ||| || ||| |||||||   ||| |||| |||||||||| ||| |||||||||||||||||||||| |     
T  45993425 gctgattgtgctgttctcatcattgattccactactcgtggttttgaagccggtatttcaaaggatggtcagactcgtgaacatgctcttcttgccttca 45993524  T
Q  104 ctcttggtgtg 114  Q
    |||||||||||    
T  45993525 ctcttggtgtg 45993535  T

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Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 68 - 141
Target Start/End: Original strand, 45983703 - 45983776
Alignment:
Q  68 atggtcggacccgtgaacatgctcttcttgcctccgctcttggtgtgcctcgaatgatttgctgcatcaacaag 141  Q
    |||||| |||||||||||||||||||||||||| | |||||||||||  || |||||| ||||||  |||||||    
T  45983703 atggtcagacccgtgaacatgctcttcttgccttcactcttggtgtgaatcaaatgatctgctgctgcaacaag 45983776  T

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Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 4 - 168
Target Start/End: Original strand, 7888712 - 7888876
Alignment:
Q  4 gctgattgtgctcttcttatcgtcgattctactcctggtgcttttgaaaatggtttttctaaggatggtcggacccgtgaacatgctcttcttgcctccg 103  Q
    |||||||||||| |||| ||| | ||||| ||  |||||| |||||||   ||||||| ||||||||||| ||||  |||||||| ||  ||||||| ||    
T  7888712 gctgattgtgctgttctcatcattgattccacaactggtggttttgaagccggtttttgtaaggatggtcagaccactgaacatgttcaacttgccttcg 7888811  T
Q  104 ctcttggtgtgcctcgaatgatttgctgcatcaacaagatggatgccacaacacctacatactcc 168  Q
    |||| |||||      |||||| ||||||  |||||||||||||||||| ||||| | |||||||    
T  7888812 ctctcggtgtttaaaaaatgatctgctgctgcaacaagatggatgccactacacccatatactcc 7888876  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 114
Target Start/End: Complemental strand, 3301082 - 3300972
Alignment:
Q  4 gctgattgtgctcttcttatcgtcgattctactcctggtgcttttgaaaatggtttttctaaggatggtcggacccgtgaacatgctcttcttgcctccg 103  Q
    |||||||||||| |||| ||| | ||||| ||| | |||| |||||||   ||| | || |||||||| | |||||||||||| ||||||||||| | |     
T  3301082 gctgattgtgctgttctgatcattgattccactaccggtggttttgaagccggtatatcaaaggatgggcagacccgtgaacacgctcttcttgctttca 3300983  T
Q  104 ctcttggtgtg 114  Q
    |||||||||||    
T  3300982 ctcttggtgtg 3300972  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 141
Target Start/End: Original strand, 38137834 - 38137930
Alignment:
Q  45 ttttgaaaatggtttttctaaggatggtcggacccgtgaacatgctcttcttgcctccgctcttggtgtgcctcgaatgatttgctgcatcaacaag 141  Q
    |||||||  ||||| |||| |||| |||| ||||  |||||||||||||||||| | || |||||||||||  | |||||| ||||||  |||||||    
T  38137834 ttttgaagctggttattctcaggaaggtcagacctctgaacatgctcttcttgcattcgttcttggtgtgcgccaaatgatctgctgctgcaacaag 38137930  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 113
Target Start/End: Complemental strand, 16349491 - 16349382
Alignment:
Q  4 gctgattgtgctcttcttatcgtcgattctactcctggtgcttttgaaaatggtttttctaaggatggtcggacccgtgaacatgctcttcttgcctccg 103  Q
    ||||||||||||||||||||||| ||||| ||||||| || ||||| |   ||| |||| ||  |||||| || ||||||||||||||| | ||| | |     
T  16349491 gctgattgtgctcttcttatcgttgattccactcctgctggttttggagccggtatttccaataatggtcagatccgtgaacatgctctccatgcttact 16349392  T
Q  104 ctcttggtgt 113  Q
    ||||||||||    
T  16349391 ctcttggtgt 16349382  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 98
Target Start/End: Original strand, 7519652 - 7519746
Alignment:
Q  4 gctgattgtgctcttcttatcgtcgattctactcctggtgcttttgaaaatggtttttctaaggatggtcggacccgtgaacatgctcttcttgc 98  Q
    |||||||||||| | |||||| | || || ||  |||||| |||||||  |||| | ||||||||||| | ||||||||| ||||||||||||||    
T  7519652 gctgattgtgctgtccttatcattgactccaccactggtggttttgaagctggtatctctaaggatggacagacccgtgagcatgctcttcttgc 7519746  T

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