View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3307_low_6 (Length: 569)
Name: NF3307_low_6
Description: NF3307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3307_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 1 - 552
Target Start/End: Original strand, 3602902 - 3603446
Alignment:
| Q |
1 |
cgcccaagggaagcaaacgctagagctgatgattcctagtcgtggaagagacttcgtatgctttgatttttgtttcttagcttatattaatttttcttct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3602902 |
cgcccaagggaagcaaacgctagagctgatgattcctagtcgtggaagagacttcgtatgctttgatttttgtttcttagcttatattaatttttcttct |
3603001 |
T |
|
| Q |
101 |
caagcttgaatagaactttaatcgtgtgtttcaagtgatttgcttttgtacataaattggattttcaaacaacctgcacggctgcacgtgaaccggttct |
200 |
Q |
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|||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
3603002 |
caagctcgaatagaactttaatcgtgtgtttcaagtgatttacttttgtacataaattggattttcaaacaacctgc--------acgtgaaccggttct |
3603093 |
T |
|
| Q |
201 |
tatgtttaaaacggggttcaaaccagcttggcaccaatttacaatttcaaaccgctttacattttttcatgaaatggtttggttttgtaccggttaacaa |
300 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3603094 |
tatgtttaaaacggggttcaaaccagtttggcaccaatttacaatttcaaaccgctttacattttttcatgaaatggtttggttttgtaccggttaacaa |
3603193 |
T |
|
| Q |
301 |
tgaagtgggttggtttatatggcttggttaaccatgcacacccttaccaatggagagaacctatggaaaactatat-nnnnnnnnccacttgatcatata |
399 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |
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| T |
3603194 |
tgaagtgggttggtttatatggcttgcttaaccatgcacacccttaccaatggagagaacctatggaaaactatataaaaaaaaacaacttgatcatata |
3603293 |
T |
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| Q |
400 |
tcatnnnnnnntttaaaaatgtaattttatataatgtgatgagatgatatggtgatgattgaatgtttatacaaaacttgttacaccatcatcttgagaa |
499 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
3603294 |
tcataaaaaaatttaaaaatgtaattttatataatgtgatgagatgatatggtgatgattgaatgtttatacaaaacttgttacaccatcattttgagaa |
3603393 |
T |
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| Q |
500 |
ttagcacttgcaatttgatacattcatatcagctaggaaaagcatgtctatat |
552 |
Q |
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| ||||| |||||||||||||||||||| |||||||||||||||||| ||||| |
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| T |
3603394 |
tcagcacatgcaatttgatacattcataccagctaggaaaagcatgtttatat |
3603446 |
T |
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