View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3307_low_7 (Length: 543)

Name: NF3307_low_7
Description: NF3307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3307_low_7
NF3307_low_7
[»] chr3 (3 HSPs)
chr3 (9-528)||(34759398-34759916)
chr3 (308-358)||(20874338-20874388)
chr3 (246-289)||(48528494-48528538)
[»] chr4 (1 HSPs)
chr4 (9-144)||(43729002-43729137)
[»] chr2 (2 HSPs)
chr2 (246-290)||(32694129-32694173)
chr2 (246-289)||(37053510-37053554)
[»] chr1 (1 HSPs)
chr1 (247-289)||(43372069-43372112)
[»] chr8 (2 HSPs)
chr8 (308-357)||(4763904-4763953)
chr8 (315-356)||(13993226-13993267)
[»] chr5 (2 HSPs)
chr5 (247-287)||(26516215-26516256)
chr5 (54-138)||(14496575-14496659)


Alignment Details
Target: chr3 (Bit Score: 471; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 9 - 528
Target Start/End: Complemental strand, 34759916 - 34759398
Alignment:
Q  9 agcaaaggcaaatataaatgtgtgggcacctcatgtaacagatggatatgaatttagcttgtcacagatatgggttattgctggctcctttggtaatgat 108  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34759916 agcaaaggcaaacataaatgtgtgggcacctcatgtaacagatggatatgaatttagcttgtcacagatatgggttattgctggctcctttggtaatgat 34759817  T
Q  109 ctgaataccctagaagctggttggcaggcatgtccatatactttttcccctccctaaattatcattagtatgcaaatattccacttcatgtttcatttga 208  Q
    || |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34759816 ctcaataccctagaagctggttggcaggcatgtccatatacttttccccctccctaaattatcattagtatgcaaatattccacttcatgtttcatttga 34759717  T
Q  209 taatccattgttcattagataaacaacttaattaaacttaagcgcttatcatataagtcttatgtataggctatttctatatnnnnnnntaaaataaagg 308  Q
     ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||       |||||||||||    
T  34759716 -aatccattgttcatttgataaacaacttaattaaacttaagcgcttatcatataagtcttatgtataagctatttctatatcaaaaaataaaataaagg 34759618  T
Q  309 ttttcaaataacctataagctgttttattaagctatcctgaatagcttaaagaaaaaactgaaatcagtctcactagttttcaatgtcagtaggaatgca 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34759617 ttttcaaataacctataagctgttttattaagctatcctgaatagcttaaagaaaaaactgaaatcagtctcactagttttcaatgtcagtaggaatgca 34759518  T
Q  409 ttgtttcattctcattgtatgctatatctttcttcaggtaagtccagaactgtatggtgacaactatccaaggttcttcacttattggactgtgagtata 508  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34759517 ttgtttcattctcattgtatgctatatctttcttcaggtaagtccagaactgtatggtgacaactatccaaggttcttcacttattggactgtgagtata 34759418  T
Q  509 atatagtaatagtaatcact 528  Q
    ||||||||||||||||||||    
T  34759417 atatagtaatagtaatcact 34759398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 308 - 358
Target Start/End: Complemental strand, 20874388 - 20874338
Alignment:
Q  308 gttttcaaataacctataagctgttttattaagctatcctgaatagcttaa 358  Q
    ||||||| |||| ||||||||||||||  ||||||||||| ||||||||||    
T  20874388 gttttcatataaactataagctgttttcataagctatcctaaatagcttaa 20874338  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 246 - 289
Target Start/End: Original strand, 48528494 - 48528538
Alignment:
Q  246 ttaagcgcttatcatataagt-cttatgtataggctatttctata 289  Q
    ||||| ||||||||||||||| |||||||||| ||||||||||||    
T  48528494 ttaagagcttatcatataagtacttatgtataagctatttctata 48528538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 6e-23; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 9 - 144
Target Start/End: Complemental strand, 43729137 - 43729002
Alignment:
Q  9 agcaaaggcaaatataaatgtgtgggcacctcatgtaacagatggatatgaatttagcttgtcacagatatgggttattgctggctcctttggtaatgat 108  Q
    |||||| ||||  |||||||||||| ||||    ||||| |||  ||||||||| ||||| ||||| ||||||||||||||||| || ||||||||||||    
T  43729137 agcaaaagcaagcataaatgtgtggacaccaagggtaactgatcaatatgaattcagcttatcacaaatatgggttattgctggatcatttggtaatgat 43729038  T
Q  109 ctgaataccctagaagctggttggcaggcatgtcca 144  Q
    || |||||  |||||||||| |||||||||||||||    
T  43729037 cttaatacattagaagctggatggcaggcatgtcca 43729002  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 246 - 290
Target Start/End: Original strand, 32694129 - 32694173
Alignment:
Q  246 ttaagcgcttatcatataagtcttatgtataggctatttctatat 290  Q
    ||||||||||||||||||||| ||||||||| |||||||||||||    
T  32694129 ttaagcgcttatcatataagtattatgtataagctatttctatat 32694173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 246 - 289
Target Start/End: Original strand, 37053510 - 37053554
Alignment:
Q  246 ttaagcgcttatcatataagt-cttatgtataggctatttctata 289  Q
    |||||| |||||||||||||| ||||||||||| |||||||||||    
T  37053510 ttaagcacttatcatataagtgcttatgtatagactatttctata 37053554  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 247 - 289
Target Start/End: Complemental strand, 43372112 - 43372069
Alignment:
Q  247 taagcgcttatcatataa-gtcttatgtataggctatttctata 289  Q
    |||||||||||||||||| | |||||||||||||||||||||||    
T  43372112 taagcgcttatcatataatggcttatgtataggctatttctata 43372069  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 357
Target Start/End: Original strand, 4763904 - 4763953
Alignment:
Q  308 gttttcaaataacctataagctgttttattaagctatcctgaatagctta 357  Q
    ||||||| |||| ||||||||||||||  |||||||||||||| ||||||    
T  4763904 gttttcacataagctataagctgtttttctaagctatcctgaagagctta 4763953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 356
Target Start/End: Complemental strand, 13993267 - 13993226
Alignment:
Q  315 aataacctataagctgttttattaagctatcctgaatagctt 356  Q
    ||||| ||||||||||||||||||||||||| |||| |||||    
T  13993267 aataagctataagctgttttattaagctatcttgaagagctt 13993226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 287
Target Start/End: Original strand, 26516215 - 26516256
Alignment:
Q  247 taagcgcttatcatataagt-cttatgtataggctatttcta 287  Q
    |||||||||||||||||||| |||||||||| ||||||||||    
T  26516215 taagcgcttatcatataagtgcttatgtataagctatttcta 26516256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 54 - 138
Target Start/End: Complemental strand, 14496659 - 14496575
Alignment:
Q  54 atatgaatttagcttgtcacagatatgggttattgctggctcctttggtaatgatctgaataccctagaagctggttggcaggca 138  Q
    ||||||||| |||||||| || || ||||| ||| |||| || |||||  ||||||| || ||| | ||||||||||||||||||    
T  14496659 atatgaattcagcttgtcccaaatgtgggtcatttctggttcatttggagatgatcttaacaccattgaagctggttggcaggca 14496575  T

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