View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3307_low_9 (Length: 497)

Name: NF3307_low_9
Description: NF3307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3307_low_9
NF3307_low_9
[»] chr1 (6 HSPs)
chr1 (11-376)||(49144907-49145272)
chr1 (118-313)||(4235377-4235572)
chr1 (399-481)||(49144801-49144883)
chr1 (162-286)||(49149544-49149668)
chr1 (11-94)||(4235623-4235706)
chr1 (238-286)||(21290440-21290488)
[»] chr5 (1 HSPs)
chr5 (121-286)||(35625806-35625971)
[»] chr7 (8 HSPs)
chr7 (151-284)||(28614633-28614765)
chr7 (151-275)||(28621240-28621364)
chr7 (151-263)||(29269797-29269909)
chr7 (121-286)||(29287607-29287772)
chr7 (151-255)||(28612936-28613040)
chr7 (190-286)||(29275341-29275437)
chr7 (151-286)||(29279174-29279309)
chr7 (151-286)||(29282153-29282288)
[»] chr6 (1 HSPs)
chr6 (236-279)||(5121757-5121800)


Alignment Details
Target: chr1 (Bit Score: 346; Significance: 0; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 11 - 376
Target Start/End: Complemental strand, 49145272 - 49144907
Alignment:
Q  11 cacagagcgaaagtttactattattagcatggcatacctgaaattgaaaagggtgccatcttttgtttagaataccatacaaccaattcatctctataga 110  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  49145272 cacagagcgaaagtttactattattagcatggcataactgaaattgaaaagggtgccatcttttgtttagaataccatacaaccaattcttctctgtaga 49145173  T
Q  111 agaacgagatatcattagcatgggtagtgcattggtcttgaattgatgattttgatggctaaactttgcaattgatcgccaagtcttgcacacagcacca 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49145172 agaacgagatatcattagcatgggtagtgcattggtcttgaattgatgattttgatggctaaactttgcaattgatcgccaagtcttgcacacagcacca 49145073  T
Q  211 aacgaaacataatctatgtgttcttctaacttgtcaagaatcaaattaagaggaagggcttctaaatttgcccaatttcgtctcttcattttgtgactaa 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  49145072 aacgaaacataatctatgtgttcttctaacttgtcaagaatcaaattaagagcaagggcttctaaatttgcccaatttcgtctcttcattttgtgactaa 49144973  T
Q  311 tgaagctgaattaaaagtaaattgtgggcagagaaatggtataaagctaattaagaaacctaattt 376  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  49144972 tgaagctgaattaaaagtaaattgtgggcagaggaatggtataaagctaattaagaaacctaattt 49144907  T

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Target: chr1; HSP #2
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 118 - 313
Target Start/End: Complemental strand, 4235572 - 4235377
Alignment:
Q  118 gatatcattagcatgggtagtgcattggtcttgaattgatgattttgatggctaaactttgcaattgatcgccaagtcttgcacacagcaccaaacgaaa 217  Q
    |||||||||| |||||||| ||  |||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||    
T  4235572 gatatcattaacatgggtaatgtgttggccttgaattgatgattttgatggttaaactttgcaattgatcgccaactcttgcacacagcaccaaaccaaa 4235473  T
Q  218 cataatctatgtgttcttctaacttgtcaagaatcaaattaagaggaagggcttctaaatttgcccaatttcgtctcttcattttgtgactaatga 313  Q
    ||| || |||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||| ||| |||||| ||||| ||||||    
T  4235472 catgatatatgtgttcttctaacttgtcaagtatcaaactaagaggaagtgcttctaaatttgcccaatttcttcttttcattgtgtgattaatga 4235377  T

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Target: chr1; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 399 - 481
Target Start/End: Complemental strand, 49144883 - 49144801
Alignment:
Q  399 cttgattaaaaaagcaaagaggtttcaaaacttttttatataggattgaaaacttgtcaaagaagaaaccttgttgaaaaaac 481  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  49144883 cttgattaaaaaagcgaagaggtttcaaaacttttttatataggattgaaaacttgtcaaagaagaaatcttgttgaaaaaac 49144801  T

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Target: chr1; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 162 - 286
Target Start/End: Complemental strand, 49149668 - 49149544
Alignment:
Q  162 ttgatggctaaactttgcaattgatcgccaagtcttgcacacagcaccaaacgaaacataatctatgtgttcttctaacttgtcaagaatcaaattaaga 261  Q
    ||||||| ||| ||||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||| ||||  ||||    
T  49149668 ttgatggttaagctttgcaattgatcgccaactcttgcacacagcaccaaaccaaacatgatctatgtgttcttctaacatgtcaagaaccaaaccaaga 49149569  T
Q  262 ggaagggcttctaaatttgcccaat 286  Q
    ||||  ||| |||||||| ||||||    
T  49149568 ggaattgctcctaaatttacccaat 49149544  T

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Target: chr1; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 11 - 94
Target Start/End: Complemental strand, 4235706 - 4235623
Alignment:
Q  11 cacagagcgaaagtttactattattagcatggcatacctgaaattgaaaagggtgccatcttttgtttagaataccatacaacc 94  Q
    |||| ||||||||||||   |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  4235706 cacaaagcgaaagtttagggttattagcatggcatacctgaaattgaaaagggtaccatcttttgtttagaataccgtacaacc 4235623  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 238 - 286
Target Start/End: Complemental strand, 21290488 - 21290440
Alignment:
Q  238 aacttgtcaagaatcaaattaagaggaagggcttctaaatttgcccaat 286  Q
    ||||||| || ||||||| ||||||||||| ||||||||||| ||||||    
T  21290488 aacttgttaaaaatcaaactaagaggaaggacttctaaatttccccaat 21290440  T

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Target: chr5 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 121 - 286
Target Start/End: Original strand, 35625806 - 35625971
Alignment:
Q  121 atcattagcatgggtagtgcattggtcttgaattgatgattttgatggctaaactttgcaattgatcgccaagtcttgcacacagcaccaaacgaaacat 220  Q
    |||||||||||||||||| |||  ||  |||| || |||||||||||| ||||||||||||||||||||||  |||||||||| ||||| ||| ||||||    
T  35625806 atcattagcatgggtagtacatgagttctgaactgctgattttgatggttaaactttgcaattgatcgccagttcttgcacacggcaccgaaccaaacat 35625905  T
Q  221 aatctatgtgttcttctaacttgtcaagaatcaaattaagaggaagggcttctaaatttgcccaat 286  Q
     ||||||  |||||||||||||||||||||| |||   || | ||| |||||||||||| ||||||    
T  35625906 gatctattcgttcttctaacttgtcaagaattaaacctagtgcaagtgcttctaaattttcccaat 35625971  T

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Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 151 - 284
Target Start/End: Complemental strand, 28614765 - 28614633
Alignment:
Q  151 aattgatgattttgatggctaaactttgcaattgatcgccaagtcttgcacacagcaccaaacgaaacataatctatgtgttcttctaacttgtcaagaa 250  Q
    |||||||| ||||||||| ||| |||||||| |||||||||||||||||||||  |||  |||  ||||| |||||||||||||||||||||| ||||||    
T  28614765 aattgatggttttgatggttaagctttgcaactgatcgccaagtcttgcacacgacactgaacctaacatgatctatgtgttcttctaacttg-caagaa 28614667  T
Q  251 tcaaattaagaggaagggcttctaaatttgccca 284  Q
     |||||||||||||||  ||||||| || |||||    
T  28614666 ccaaattaagaggaagttcttctaagttagccca 28614633  T

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Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 151 - 275
Target Start/End: Complemental strand, 28621364 - 28621240
Alignment:
Q  151 aattgatgattttgatggctaaactttgcaattgatcgccaagtcttgcacacagcaccaaacgaaacataatctatgtgttcttctaacttgtcaagaa 250  Q
    |||||||||||||||||| | |||||||||| ||| |||||| | ||||||||  ||||||||  ||||| ||| ||||||||||| || ||||||||||    
T  28621364 aattgatgattttgatggttcaactttgcaactgaacgccaatttttgcacacgacaccaaacctaacatgatcgatgtgttcttccaatttgtcaagaa 28621265  T
Q  251 tcaaattaagaggaagggcttctaa 275  Q
     |||| ||||||||||  |||||||    
T  28621264 ccaaactaagaggaagttcttctaa 28621240  T

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Target: chr7; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 151 - 263
Target Start/End: Complemental strand, 29269909 - 29269797
Alignment:
Q  151 aattgatgattttgatggctaaactttgcaattgatcgccaagtcttgcacacagcaccaaacgaaacataatctatgtgttcttctaacttgtcaagaa 250  Q
    ||||||||||||| |||| ||| ||||||||||||| | ||| ||||||||||  ||||||||  ||||| ||||||||||||||| |||| ||||||||    
T  29269909 aattgatgatttttatggttaagctttgcaattgataggcaactcttgcacaccacaccaaacctaacatgatctatgtgttcttccaactcgtcaagaa 29269810  T
Q  251 tcaaattaagagg 263  Q
     |||| |||||||    
T  29269809 ccaaactaagagg 29269797  T

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Target: chr7; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 121 - 286
Target Start/End: Complemental strand, 29287772 - 29287607
Alignment:
Q  121 atcattagcatgggtagtgcattggtcttgaattgatgattttgatggctaaactttgcaattgatcgccaagtcttgcacacagcaccaaacgaaacat 220  Q
    ||||| ||||| |||||| ||||  || | ||||||||||||| |||| ||| ||| ||||||||| ||||| |||| |||||  ||||||||  |||||    
T  29287772 atcataagcataggtagtacattaatcctaaattgatgatttttatggttaagcttagcaattgatagccaattcttacacaccacaccaaacctaacat 29287673  T
Q  221 aatctatgtgttcttctaacttgtcaagaatcaaattaagaggaagggcttctaaatttgcccaat 286  Q
    | ||| | ||| |||| ||||| ||||||| |||| ||||||||||  || |||||||||||||||    
T  29287672 agtctgtttgtacttccaacttttcaagaaccaaactaagaggaagtcctcctaaatttgcccaat 29287607  T

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Target: chr7; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 151 - 255
Target Start/End: Original strand, 28612936 - 28613040
Alignment:
Q  151 aattgatgattttgatggctaaactttgcaattgatcgccaagtcttgcacacagcaccaaacgaaacataatctatgtgttcttctaacttgtcaagaa 250  Q
    ||||||||  |||||||| ||| |||||||| |||| ||||||||||||||||  || |||||  ||||| ||||||||||||||| |||||||||||||    
T  28612936 aattgatggctttgatggttaagctttgcaactgatagccaagtcttgcacacgacagcaaacctaacatgatctatgtgttcttccaacttgtcaagaa 28613035  T
Q  251 tcaaa 255  Q
     ||||    
T  28613036 ccaaa 28613040  T

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Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 190 - 286
Target Start/End: Complemental strand, 29275437 - 29275341
Alignment:
Q  190 caagtcttgcacacagcaccaaacgaaacataatctatgtgttcttctaacttgtcaagaatcaaattaagaggaagggcttctaaatttgcccaat 286  Q
    ||||||||||||||  ||| ||||  ||||| ||||||||||||||| ||||| ||||||| |||| ||||||||  || |||||||||| ||||||    
T  29275437 caagtcttgcacactacacgaaacctaacatgatctatgtgttcttccaacttatcaagaaccaaactaagaggagaggattctaaattttcccaat 29275341  T

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Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 151 - 286
Target Start/End: Complemental strand, 29279309 - 29279174
Alignment:
Q  151 aattgatgattttgatggctaaactttgcaattgatcgccaagtcttgcacacagcaccaaacgaaacataatctatgtgttcttctaacttgtcaagaa 250  Q
    ||||||||||||| |||| ||| | |||||| |||   |||| |||| |||||  ||||||||  ||||| ||||||||||||||| ||||| |||||||    
T  29279309 aattgatgatttttatggttaagcgttgcaactgaaaaccaattcttacacaccacaccaaacctaacatgatctatgtgttcttccaacttatcaagaa 29279210  T
Q  251 tcaaattaagaggaagggcttctaaatttgcccaat 286  Q
      ||| ||||||||   |||||||||||| ||||||    
T  29279209 caaaactaagaggatatgcttctaaattttcccaat 29279174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 151 - 286
Target Start/End: Complemental strand, 29282288 - 29282153
Alignment:
Q  151 aattgatgattttgatggctaaactttgcaattgatcgccaagtcttgcacacagcaccaaacgaaacataatctatgtgttcttctaacttgtcaagaa 250  Q
    ||||||||||||| |||| ||| ||| |||  |||| ||||| |||| |||||| |||| |||  |||||| ||| | ||| |||| ||||| |||||||    
T  29282288 aattgatgatttttatggttaagcttagcagctgatagccaattcttacacacaacaccgaacctaacatagtctgtttgtacttccaacttttcaagaa 29282189  T
Q  251 tcaaattaagaggaagggcttctaaatttgcccaat 286  Q
     |||| ||||||||||  | | ||||||||||||||    
T  29282188 ccaaactaagaggaagttcatttaaatttgcccaat 29282153  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 236 - 279
Target Start/End: Original strand, 5121757 - 5121800
Alignment:
Q  236 ctaacttgtcaagaatcaaattaagaggaagggcttctaaattt 279  Q
    |||||||||||| ||||||| |||||||||| ||||||||||||    
T  5121757 ctaacttgtcaaaaatcaaactaagaggaagtgcttctaaattt 5121800  T

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