View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3308_high_11 (Length: 451)

Name: NF3308_high_11
Description: NF3308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3308_high_11
NF3308_high_11
[»] chr3 (15 HSPs)
chr3 (17-437)||(3753719-3754139)
chr3 (119-375)||(4142736-4142992)
chr3 (119-375)||(4158546-4158802)
chr3 (254-372)||(3745168-3745286)
chr3 (275-380)||(967861-967966)
chr3 (260-380)||(2679178-2679298)
chr3 (250-372)||(2651142-2651264)
chr3 (32-71)||(4142670-4142709)
chr3 (32-71)||(4158480-4158519)
chr3 (260-378)||(2687085-2687203)
chr3 (268-356)||(803972-804060)
chr3 (275-349)||(1003714-1003788)
chr3 (275-349)||(1021711-1021785)
chr3 (275-381)||(1937720-1937826)
chr3 (241-317)||(1891770-1891846)
[»] chr5 (1 HSPs)
chr5 (204-372)||(11081379-11081547)
[»] chr8 (1 HSPs)
chr8 (248-381)||(19727108-19727241)
[»] chr1 (1 HSPs)
chr1 (272-348)||(25611754-25611830)
[»] chr4 (1 HSPs)
chr4 (282-383)||(20020552-20020653)


Alignment Details
Target: chr3 (Bit Score: 409; Significance: 0; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 17 - 437
Target Start/End: Complemental strand, 3754139 - 3753719
Alignment:
Q  17 actaagccgttatgattgtctgcaatacacacaatgccgttgcaagagccaatgataaaataaagtttgccataagtccgatcttcattagaaaggttat 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3754139 actaagccgttatgattgtctgcaatacacacaatgccgttgcaagagccaatgataaaataaagtttgccataagtccgatcttcattagaaaggttat 3754040  T
Q  117 actcagattgtatgaagttagaggttatgtctctgaaaatagagtcgattggataagatgtgagaatatacttgtgtgaccaacggctgtagtttaggaa 216  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3754039 actcagattgtatgaagttagaggttatgtctgtgaaaatagagtcgattggataagatgtgagaatatacttgtgtgaccaacggctgtagtttaggaa 3753940  T
Q  217 gtggaggttccgagcgatggacacacggagttgtttcttgacgaattttggatcggatattagaaaattccatgacttgcaaacacatcggaatcgaagg 316  Q
    ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3753939 gtggaggttccaagcgatggacacactgagttgtttcttgacgaattttggatcggatattagaaaattccatgacttgcaaacacatcggaatcgaagg 3753840  T
Q  317 atgaactttaccggtaacctacataggatttctggaatgacgtcgtaaggaagagttggaagtgaatggttataacggcggtgattgggtgaaggtggta 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3753839 atgaactttaccggtaacctacataggatttctggaatgacgtcgtaaggaagagttggaagtgaatggttataacggcggtgattgggtgaaggtggta 3753740  T
Q  417 caaccgagagctgattgtgat 437  Q
    |||||||||||||||||||||    
T  3753739 caaccgagagctgattgtgat 3753719  T

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Target: chr3; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 119 - 375
Target Start/End: Original strand, 4142736 - 4142992
Alignment:
Q  119 tcagattgtatgaagttagaggttatgtctctgaaaatagagtcgattggataagatgtgagaatatacttgtgtgac-caacggctgtagtttaggaag 217  Q
    ||||||||| |||||||||||||||||||| |||||  |||||| | |||||||||||||||||| |||||   |||  ||  ||| ||||||| |||||    
T  4142736 tcagattgtgtgaagttagaggttatgtctgtgaaatcagagtccagtggataagatgtgagaatgtactttcttgagtcataggc-gtagtttcggaag 4142834  T
Q  218 tggaggttccgagcgatggacacacggagttgtttcttgacgaattttggatcggatattagaaaattccatgacttgcaaacacatcggaatcgaagga 317  Q
    ||||||||||||| | ||||||||| |||||| |||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||    
T  4142835 tggaggttccgagtggtggacacacagagttgcttcttgacgaatttgggatcagatattagagaattccatgacttgcaaacacatcggaatcgaagga 4142934  T
Q  318 tgaactttaccggtaacctacataggatttctggaatgacgtcgtaaggaagagttgg 375  Q
    |||||||||| |||| |||||||| ||||||||||||||||||| |||||||||||||    
T  4142935 tgaactttactggtagcctacatatgatttctggaatgacgtcggaaggaagagttgg 4142992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 119 - 375
Target Start/End: Original strand, 4158546 - 4158802
Alignment:
Q  119 tcagattgtatgaagttagaggttatgtctctgaaaatagagtcgattggataagatgtgagaatatacttgtgtgac-caacggctgtagtttaggaag 217  Q
    ||||||||| ||||||||||| |||||||| |||||  |||||||| ||| |||||||||||||| |||||   |||  ||  |||  ||||||||||||    
T  4158546 tcagattgtgtgaagttagagtttatgtctgtgaaatcagagtcgagtgggtaagatgtgagaatgtactttcttgagtcataggca-tagtttaggaag 4158644  T
Q  218 tggaggttccgagcgatggacacacggagttgtttcttgacgaattttggatcggatattagaaaattccatgacttgcaaacacatcggaatcgaagga 317  Q
    ||||||||||||| | ||||||||| |||||| |||||||||||||| ||||| ||||||||| ||||||||||||||||||||||| ||||||| ||||    
T  4158645 tggaggttccgagtggtggacacacagagttgcttcttgacgaatttgggatcagatattagagaattccatgacttgcaaacacattggaatcggagga 4158744  T
Q  318 tgaactttaccggtaacctacataggatttctggaatgacgtcgtaaggaagagttgg 375  Q
    ||||||||||||||| |||||||| ||||||| ||||||||||| |||||||||||||    
T  4158745 tgaactttaccggtagcctacatatgatttctagaatgacgtcggaaggaagagttgg 4158802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 254 - 372
Target Start/End: Complemental strand, 3745286 - 3745168
Alignment:
Q  254 ttgacgaattttggatcggatattagaaaattccatgacttgcaaacacatcggaatcgaaggatgaactttaccggtaacctacataggatttctggaa 353  Q
    ||||| ||||| ||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||| |||||||| |||||||||||    
T  3745286 ttgacaaatttgggatcagatattagagaattccatgacttgcaaacacatcggaattgaaggatgaacttcaccggtagcctacataagatttctggaa 3745187  T
Q  354 tgacgtcgtaaggaagagt 372  Q
    |||||||| ||||||||||    
T  3745186 tgacgtcggaaggaagagt 3745168  T

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Target: chr3; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 275 - 380
Target Start/End: Complemental strand, 967966 - 967861
Alignment:
Q  275 attagaaaattccatgacttgcaaacacatcggaatcgaaggatgaactttaccggtaacctacataggatttctggaatgacgtcgtaaggaagagttg 374  Q
    |||||| ||||||| |||||||| |||||||||||| | | || || |||||||| || ||||||||| |||||||||||||  ||| |||||||||| |    
T  967966 attagagaattccacgacttgcacacacatcggaattgcatgaggagctttaccgatagcctacatagaatttctggaatgagatcgaaaggaagagtcg 967867  T
Q  375 gaagtg 380  Q
    ||||||    
T  967866 gaagtg 967861  T

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Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 260 - 380
Target Start/End: Original strand, 2679178 - 2679298
Alignment:
Q  260 aattttggatcggatattagaaaattccatgacttgcaaacacatcggaatcgaaggatgaactttaccggtaacctacataggatttctggaatgacgt 359  Q
    |||||||||||||| || ||| | |||||||||||||| |||||||||| | |||||| ||| || ||| |||||||| | || || ||||| |||| ||    
T  2679178 aattttggatcggagatcagagatttccatgacttgcagacacatcggagttgaaggaggaatttcacctgtaacctagacagtatatctgggatgaggt 2679277  T
Q  360 cgtaaggaagagttggaagtg 380  Q
    || |||||||||| |||||||    
T  2679278 cgaaaggaagagtgggaagtg 2679298  T

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Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 250 - 372
Target Start/End: Original strand, 2651142 - 2651264
Alignment:
Q  250 tttcttgacgaattttggatcggatattagaaaattccatgacttgcaaacacatcggaatcgaaggatgaactttaccggtaacctacataggatttct 349  Q
    |||| ||| ||||||  ||||||| || ||| ||||||||| |||||| |||||||| | | ||| || || ||||||||||||||||| ||| ||||||    
T  2651142 tttcatgatgaatttgtgatcggagataagagaattccatggcttgcagacacatcgaagttgaaagaggagctttaccggtaacctacgtagaatttct 2651241  T
Q  350 ggaatgacgtcgtaaggaagagt 372  Q
     |||| | |||| ||||||||||    
T  2651242 tgaataaggtcgaaaggaagagt 2651264  T

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Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 32 - 71
Target Start/End: Original strand, 4142670 - 4142709
Alignment:
Q  32 ttgtctgcaatacacacaatgccgttgcaagagccaatga 71  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  4142670 ttgtctgcaagacacacaatgccgttgcaagagccaatga 4142709  T

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Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 32 - 71
Target Start/End: Original strand, 4158480 - 4158519
Alignment:
Q  32 ttgtctgcaatacacacaatgccgttgcaagagccaatga 71  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  4158480 ttgtctgcaatacacacaatgccgttgcaagaaccaatga 4158519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 260 - 378
Target Start/End: Original strand, 2687085 - 2687203
Alignment:
Q  260 aattttggatcggatattagaaaattccatgacttgcaaacacatcggaatcgaaggatgaactttaccggtaacctacataggatttctggaatgacgt 359  Q
    |||||||||||||| || ||| | |||||||||||||| |||||||||| | |||||| ||| || ||| | |||||| | || || ||||| |||| ||    
T  2687085 aattttggatcggagatcagagatttccatgacttgcagacacatcggagttgaaggaggaatttcacctgcaacctagacagtatatctgggatgaggt 2687184  T
Q  360 cgtaaggaagagttggaag 378  Q
    || ||||||| || |||||    
T  2687185 cgaaaggaagggtgggaag 2687203  T

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Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 268 - 356
Target Start/End: Original strand, 803972 - 804060
Alignment:
Q  268 atcggatattagaaaattccatgacttgcaaacacatcggaatcgaaggatgaactttaccggtaacctacataggatttctggaatga 356  Q
    |||| |||||||| ||||||||||||||||||| ||||||| | |||| | |||||| || ||||||| ||| |  ||||||| |||||    
T  803972 atcgcatattagagaattccatgacttgcaaacgcatcggagttgaagtaagaacttcacaggtaaccaacacaaaatttctgcaatga 804060  T

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Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 275 - 349
Target Start/End: Complemental strand, 1003788 - 1003714
Alignment:
Q  275 attagaaaattccatgacttgcaaacacatcggaatcgaaggatgaactttaccggtaacctacataggatttct 349  Q
    |||||||||||||||||||||||| | ||||| | | |||||| || ||| || |||||||||  ||||||||||    
T  1003788 attagaaaattccatgacttgcaagcgcatcgaagttgaaggaggagcttcactggtaacctagctaggatttct 1003714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 275 - 349
Target Start/End: Complemental strand, 1021785 - 1021711
Alignment:
Q  275 attagaaaattccatgacttgcaaacacatcggaatcgaaggatgaactttaccggtaacctacataggatttct 349  Q
    |||||||||||||||||||||||| | ||||| | | |||||| || ||| || |||||||||  ||||||||||    
T  1021785 attagaaaattccatgacttgcaagcgcatcgaagttgaaggaggagcttcactggtaacctagctaggatttct 1021711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 275 - 381
Target Start/End: Original strand, 1937720 - 1937826
Alignment:
Q  275 attagaaaattccatgacttgcaaacacatcggaatcgaaggatgaactttaccggtaacctacataggatttctggaatgacgtcgtaaggaagagttg 374  Q
    |||||| ||||| ||||||||||||| || |||||||  |||| ||  || |||| || |||| | ||||||||||||||||  ||  |||||||||| |    
T  1937720 attagagaattctatgacttgcaaacgcaccggaatctcaggaggagtttcaccgatagcctagagaggatttctggaatgagatcaaaaggaagagtgg 1937819  T
Q  375 gaagtga 381  Q
    |||||||    
T  1937820 gaagtga 1937826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 241 - 317
Target Start/End: Original strand, 1891770 - 1891846
Alignment:
Q  241 acggagttgtttcttgacgaattttggatcggatattagaaaattccatgacttgcaaacacatcggaatcgaagga 317  Q
    |||||| |||||| || |||| || | |||||| |||||| |||||||||||||||| ||| |||||| | ||||||    
T  1891770 acggaggtgtttcatggcgaacttggaatcggagattagagaattccatgacttgcagacagatcggagttgaagga 1891846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 105; Significance: 3e-52; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 204 - 372
Target Start/End: Complemental strand, 11081547 - 11081379
Alignment:
Q  204 tgtagtttaggaagtggaggttccgagcgatggacacacggagttgtttcttgacgaattttggatcggatattagaaaattccatgacttgcaaacaca 303  Q
    |||||||||||||||||||||| |||| |  |||||||||||||||||||||||||||||| ||||| ||||||| | |||| || ||||||||||||||    
T  11081547 tgtagtttaggaagtggaggtttcgagtggcggacacacggagttgtttcttgacgaatttgggatcagatattaaagaatttcacgacttgcaaacaca 11081448  T
Q  304 tcggaatcgaaggatgaactttaccggtaacctacataggatttctggaatgacgtcgtaaggaagagt 372  Q
    | ||||||||||||||||||| |||||||||||||||||||||||| ||||||  ||| ||||||||||    
T  11081447 ttggaatcgaaggatgaacttaaccggtaacctacataggatttctagaatgagatcggaaggaagagt 11081379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 248 - 381
Target Start/End: Complemental strand, 19727241 - 19727108
Alignment:
Q  248 tgtttcttgacgaattttggatcggatattagaaaattccatgacttgcaaacacatcggaatcgaaggatgaactttaccggtaacctacataggattt 347  Q
    ||||| ||| |||||||  |||| || |||||| ||||| | ||||||||||||||||||||  | | || ||| || || |||| ||||| ||| ||||    
T  19727241 tgtttgttggcgaatttgtgatcagagattagagaattcaacgacttgcaaacacatcggaactgcaagaggaatttcacgggtagcctacttagaattt 19727142  T
Q  348 ctggaatgacgtcgtaaggaagagttggaagtga 381  Q
    |||||||||  ||| |||||||||| ||||||||    
T  19727141 ctggaatgagatcgaaaggaagagtaggaagtga 19727108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 272 - 348
Target Start/End: Original strand, 25611754 - 25611830
Alignment:
Q  272 gatattagaaaattccatgacttgcaaacacatcggaatcgaaggatgaactttaccggtaacctacataggatttc 348  Q
    ||||||||| |||||||||||||||| || || | |||| |||||| |||||| ||||| | |||||| ||||||||    
T  25611754 gatattagagaattccatgacttgcagacgcaacagaattgaaggaggaacttgaccgggagcctacaaaggatttc 25611830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 383
Target Start/End: Original strand, 20020552 - 20020653
Alignment:
Q  282 aattccatgacttgcaaacacatcggaatcgaaggatgaactttaccggtaacctacataggatttctggaatgacgtcgtaaggaagagttggaagtga 381  Q
    |||||||||| || || |||||||| | | |||||| || ||| || ||||||||||| || ||||||  ||||| |||| |||||||| | ||||||||    
T  20020552 aattccatgaattacatacacatcgaagttgaaggaggagcttcactggtaacctacacagaatttcttcaatgaggtcgaaaggaagaatgggaagtga 20020651  T
Q  382 at 383  Q
    ||    
T  20020652 at 20020653  T

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