View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3308_high_12 (Length: 447)
Name: NF3308_high_12
Description: NF3308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3308_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 361; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 3 - 428
Target Start/End: Complemental strand, 35381068 - 35380631
Alignment:
| Q |
3 |
tgggaacaaagagggagcgttccaatggtatcattgtcttcaaattcattcaagcaaataacacaatcacgttgaaattcttcttgtgcatatttagcgt |
102 |
Q |
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| T |
35381068 |
tgggaacaaagagggagcgttccaatggtatcattgtcttcaaattcattcaagcaaataacacaatcacgttgaaattcttcttgtgcatatttagcgt |
35380969 |
T |
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| Q |
103 |
tgtagacggaggagaagatgacggcggtgtttataacggactcgtctaagttgtgaatgacatgcgtgcgcctggcctccaccattgttccatggcgagt |
202 |
Q |
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| T |
35380968 |
tgtagacggaggagaggatgacggcggtgtttataacggactcgtctaagttgtgaatgacgtgcgtgcgcctggcctccaccattgttccatggcgagt |
35380869 |
T |
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| Q |
203 |
tgtacaccaatatttgatgcttaagaagaggattttcat------------cagaaccacccctacgaagagcatgggnnnnnnnntaaaaggattcata |
290 |
Q |
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| T |
35380868 |
tgtacaccaatatttgatgcttaagaagaggattttcatcaggatcttcaccagaaccacccctacgaagagcatgggaaaaaaaataaaaggattcata |
35380769 |
T |
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| Q |
291 |
attaatgaaggagatgaggcgtgatggtgatactgttccatgtgcggctgagttggagctatggtcgtcatgggagggggagaatagggaaaggatcgca |
390 |
Q |
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| T |
35380768 |
attaatgaaggagatgaggcgtgatggtgatactgttccatgtgcggctgagttggagctatggtcgtcatgggagggggagaatagggaaaggatcgca |
35380669 |
T |
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| Q |
391 |
ttacgtgcgatgtaatttttgttactgtgagagagagg |
428 |
Q |
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| T |
35380668 |
ttacgtgcgatgtaatttttgttactgagagagagagg |
35380631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 35374816 - 35374708
Alignment:
| Q |
1 |
tgtgggaacaaagagggagcgttccaatggtatcattgtcttcaaattcattcaagcaaataacacaatcacgttgaaattcttcttgtgcatatttagc |
100 |
Q |
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||||||||||||||||||| || |||||| || |||||||||||| |||| |||||||||||||||||||||| || ||||||| | |||||| ||||| |
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| T |
35374816 |
tgtgggaacaaagagggagtgtaccaatgtcattattgtcttcaaactcatccaagcaaataacacaatcacgtagagattcttcgtttgcatacttagc |
35374717 |
T |
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| Q |
101 |
gttgtagac |
109 |
Q |
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||||||| |
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| T |
35374716 |
agtgtagac |
35374708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 311 - 393
Target Start/End: Complemental strand, 35374494 - 35374409
Alignment:
| Q |
311 |
gtgatggtgatactgttccatgtgcggctgagttggagctatggtcgtcatgggaggg---ggagaatagggaaaggatcgcatta |
393 |
Q |
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| T |
35374494 |
gtgatggtgatagtgatgcatgtgcggctgagttggagctgtggttgtcatgggaggggaagaagaatagggaaaggatcgcatta |
35374409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 35351723 - 35351663
Alignment:
| Q |
1 |
tgtgggaacaaagagggagcgttccaatggtatcattgtcttcaaattcattcaagcaaat |
61 |
Q |
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| T |
35351723 |
tgtgggaacaaagagggagggtgcgaatgtaatcattgttttcaaattcaaccaagcaaat |
35351663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 35356857 - 35356797
Alignment:
| Q |
1 |
tgtgggaacaaagagggagcgttccaatggtatcattgtcttcaaattcattcaagcaaat |
61 |
Q |
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||||||||||||||||||| || | |||| |||||||| |||||||||| ||||||||| |
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| T |
35356857 |
tgtgggaacaaagagggagagtgcgaatgtaatcattgttttcaaattcaaccaagcaaat |
35356797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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