View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3308_high_23 (Length: 383)
Name: NF3308_high_23
Description: NF3308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3308_high_23 |
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Alignment Details
Target: chr8 (Bit Score: 149; Significance: 1e-78; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 12 - 275
Target Start/End: Original strand, 8154622 - 8154880
Alignment:
| Q |
12 |
atgaagaattcggtatttgtgagcttagcttagttggtatgaatattgcataatatgttcaatgatcaagatatcgaatttataatatatatcatggtga |
111 |
Q |
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| T |
8154622 |
atgaagaattcggtatttatgagcttagtttagttggtataaatattgcataatatgttcaataatcaagatatcaaatttataatatatatcatggt-- |
8154719 |
T |
|
| Q |
112 |
ggaggatattgcataatttctcacttattcatcttaaaaataaatttatagcgattagacttcttgacnnnnnnnnnnnnnnnntctacgtctttatatt |
211 |
Q |
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||||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||||||||| || | ||||||||||| |
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| T |
8154720 |
-gaggatattgcataatttctcgcttattcatcttaaaaatgaatttatactgattagacttcttgac-aaaaaaataaaaaaatcga-gtctttatatt |
8154816 |
T |
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| Q |
212 |
cttccatataaagaggtattgcattctctagatacaaataagataatgttcatctatttatagt |
275 |
Q |
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| T |
8154817 |
cttccatataaagaggtattgcattctctagatacaaataagataatgttcatctatttatagt |
8154880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 322 - 380
Target Start/End: Original strand, 8154927 - 8154985
Alignment:
| Q |
322 |
gatcatacataaacatgtcacatccttatgtcgaaaattatggccggaaaataaaatct |
380 |
Q |
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| T |
8154927 |
gatcatacataaacatgtcacatcattatgtcgaaaattatggccgaaaaataaaatct |
8154985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 67
Target Start/End: Original strand, 41625194 - 41625231
Alignment:
| Q |
30 |
gtgagcttagcttagttggtatgaatattgcataatat |
67 |
Q |
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| T |
41625194 |
gtgagcttagctcagttggtatgaataatgcataatat |
41625231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 65
Target Start/End: Complemental strand, 21863951 - 21863917
Alignment:
| Q |
31 |
tgagcttagcttagttggtatgaatattgcataat |
65 |
Q |
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| T |
21863951 |
tgagcttagcttagttggtaggaatattgcataat |
21863917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 65
Target Start/End: Complemental strand, 21919812 - 21919778
Alignment:
| Q |
31 |
tgagcttagcttagttggtatgaatattgcataat |
65 |
Q |
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| T |
21919812 |
tgagcttagcttagttggtaggaatattgcataat |
21919778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 61
Target Start/End: Original strand, 28815616 - 28815648
Alignment:
| Q |
29 |
tgtgagcttagcttagttggtatgaatattgca |
61 |
Q |
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| T |
28815616 |
tgtgagcttagcttagttggtaggaatattgca |
28815648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 59
Target Start/End: Complemental strand, 46998438 - 46998406
Alignment:
| Q |
27 |
tttgtgagcttagcttagttggtatgaatattg |
59 |
Q |
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| T |
46998438 |
tttgtgagcttagctcagttggtatgaatattg |
46998406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 63
Target Start/End: Original strand, 19253914 - 19253942
Alignment:
| Q |
35 |
cttagcttagttggtatgaatattgcata |
63 |
Q |
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| T |
19253914 |
cttagcttagttggtatgaatattgcata |
19253942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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