View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3308_high_25 (Length: 366)
Name: NF3308_high_25
Description: NF3308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3308_high_25 |
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Alignment Details
Target: chr8 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 40 - 348
Target Start/End: Original strand, 31503810 - 31504118
Alignment:
| Q |
40 |
tcaaacttacacgtccactatctcccctaaccatctcgcagcaaaacaaacaaccatgcaaaaccaacaccatctctaaccaccctgtgagccacaacta |
139 |
Q |
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| T |
31503810 |
tcaaacttacacctccactatctcccctaaccatctcgcagcaaaacaaacaaccatgcaaaaccaacaccatctctaaccaccctgtgagccacaacta |
31503909 |
T |
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| Q |
140 |
accacccataaccaccacacaatcaccaaccgagacacccacgaaaa-aagcaaagataatgtctcaaaaagtcacccttatgtaggctaaaacaaaaaa |
238 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| | ||| |
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| T |
31503910 |
accacccataaccaccacacaatcaccaagcgagacacccacgaaaacaagcaaagataatgtct-tcaaagtcacccttatgtaggctaaaacgataaa |
31504008 |
T |
|
| Q |
239 |
ccaactccccaaagccgaaatgccgcctcaacaaccacctttaaccaccaaattcgttgacaccatcgatgacacactctctcaccacctacaatccacc |
338 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
31504009 |
ccaactccccaaagccgacatgccgcctcaacaaccacctttaaccaccaaattcgttgacaccatcgatgatacactctctcaccacctacaatccacc |
31504108 |
T |
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| Q |
339 |
actacatcac |
348 |
Q |
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|||||||||| |
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| T |
31504109 |
actacatcac |
31504118 |
T |
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