View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3308_high_3 (Length: 656)
Name: NF3308_high_3
Description: NF3308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3308_high_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 514; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 3 - 583
Target Start/End: Original strand, 31254010 - 31254592
Alignment:
| Q |
3 |
aggaatcggcaagactctatggaatcatatctacatagatgcaaaaccaagctatattccctaactaaatactctttctaagtaccttattataagagtc |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31254010 |
aggaatcggcaagactctatggaatcatatctacatagatgcaaaaccaagctatattccctaactaaatactctttctaagtaccttattataagagtc |
31254109 |
T |
|
| Q |
103 |
tttagtgaagggtattagaaaaatatagttgcagtgataaaatcgtttgataccattagagaaagaaagaaattacgtctctcaacagggtaaactaaat |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31254110 |
tttagtgaagggtattagaaaaatatagttgcagtgataaaatcgtttgataccattagagaaagaaagaaattacgtctctcaacagggtaaactaaat |
31254209 |
T |
|
| Q |
203 |
ggaaacatttttatgtatgtttgttatcacgacaaatttatcgaaaccataacttttataaaaaatgatattgctaatgaatgcattgaaaatatattgg |
302 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31254210 |
agaaacatttttatgcatgtttgttatcacgacgaatttatcgaaaccataatttttataaaaaatgatattgctaatgaatgcattgaaaatatattgg |
31254309 |
T |
|
| Q |
303 |
ttaaagagttaataaaataaaagtttgtattacaaatatattttaaacatttctcaatataataaaacattatcatgtacatactttacctctttaaatt |
402 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
31254310 |
ttaaagagttaataaaataaaagtgtgtattacaaatatattttaaacatttctcaatataataaaacattatcatgtatatactttacctctttaaatt |
31254409 |
T |
|
| Q |
403 |
gcttaaacaatacgtggaaagacaatggttaacatctgcttaag---agaaaatggattacactttaaaacaatttggacataacatatataacatgcat |
499 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| ||| |||| | ||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
31254410 |
acttaaacaatacgtgg-aagacaatggttaacatttgcctaagaaaaaaaaatggattacactttaaaatcatttggacataacatatataacatgcat |
31254508 |
T |
|
| Q |
500 |
cacatgcttgcgacaacaatgtgatcttgttattaatacccttgccaaagtgctaaaaggtcttcgagagttctagtactccta |
583 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31254509 |
cacatgcttgcgacaacaatgtgatcttgttattaatacccttgccaaagtgctaaaaggtcttcgagagttctagtactccta |
31254592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 601 - 638
Target Start/End: Original strand, 31254603 - 31254640
Alignment:
| Q |
601 |
cttatgaaatttagagtgctctttttgtttgcctttat |
638 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31254603 |
cttatgaaatttagagtgctctttttgtttgcctttat |
31254640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University